CmUC11G214150 (gene) Watermelon (USVL531) v1

Overview
NameCmUC11G214150
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCmU531Chr11: 18628911 .. 18631923 (+)
RNA-Seq ExpressionCmUC11G214150
SyntenyCmUC11G214150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTTAAAACTCCATGACACCATAGGTGGAAACACAACTCATGTAATCCAAGAACTGTTTGGGATTCAATCTAGGGCAGAAAAAGACTATCTTCATCAAACCTTCCAACAAACAAGTATGTCTGAATATTTACGATTAATCAAAATGCACTCTGACAATTTAGGGCAAGCTGGGAGCCCCGTTCCAACAAGCACACTGATCTCACAAGTCCTTCTCAAACATAATGGAGAATATAATGCCATTGTTTCCACTCTCCAAGGGAAGTCGAATATTACATGGTTGCAAATGCAATCTGAGTTACTATCATATGAGAAGAGATTGGAAGCCCAAAACACGCAAAGGAATGCAACTATAAGTAATAATCCCTCCGTAATATGGCTAATAGCAGAGGAGTCAGATCTCAGCAGCCACAAAATCCACCGTCACAAAATCAGGGCCGTGGTTGAAATAACTACAGTGGACAACGTGGAGGAAACCAATTAAAAAATAGAGTTCGAGGTAGGGGCCGAAATCAACTGACATGTCAAGTTTTTGGGAAAATCGGCCACATTGCAGACATATGCTACAATCGATATAACAAGGAGTTTACTCTTAACTTCAATCCGAACAAAAAGAATAGTGGAAACACCTTCAGAAACAACAATGGAAAACCTTCTACTGCCATGGTTGCCACACACAATGGAAATTCCTTTTACACAAATTATGAAAACACAGTTGAACAAAGTTGGTATGCTGATAGTGGAGCAACCAATCATGTGATTTCAAACTACAACAACCTCACTAATCCTATGGAATATGGAGGTAATGAATTGGTAATTGTAGGTAATGGTAATACATTACAAATTGCTTCTGTTGGTAACCCAATGCTGACTAATGGAAAATATTCGTTGAATCTAAATATTATACTACATGTTTCATATATTGCTAAAACCCTTGTTAGTGTGTCCAAGTTAGCAAAGGACAATAACGTGTTTATTGAATTTCACGATAATTATTGTCTTGTAAAGGACTAGGTTTTGGGGCAACCAATTTTGAGGGGCATACTTAAAGATGGGCTTCATCTGGAAGAAGTCACTGTGAAATCTACTGGGTCGGTTAGAACTACTACTGCCTGTGAGTTCAAGAAGGTTGTGAATGTAAATAAAGAGGATCCATTAACCTTGACGTTATCTAATATTTCTATTAGTAGTGTTGTATCTAAAACTACTTGGCATCGACAGTTGGGACATCCCTCACCGAGAATTTTCAATTTAGTCACCAAAGGTTGTAATCTGTCATTTAAAAGAGATACAACCAAAATTTTTCATTCATGCGAGTTGGGTAAATCACATAGTACTCCTTTCTCGTTGTCTGAATCACGTACCTAAAAAGCATTTGATTTGATTCATACTGACATGTGGGGTCTTGCCCCAATGTTATCCTCTGTTGGCTTCAGATATTATATACCTTTTATCGATGATTTTAGTCGTTATGTTTGGATTTACCCTCTTCGTCTAAAAATTGATACAGTGGCAGCATTTGAACACTTTGTGAAGTTGATCAAAACTCAATTCAACAGTGGTATAAAACCTCTTCAACCCGAAAATGGTGGTGAATATAAGAAAACTCATTAGTTATGTGAAAATTTAGATACAATCACTTGAATTTCATGCCCATACACCTCACTCAAAAAGACGTGTCGAGTGTAAGCATCGTCATGTAGTAGAGATGGCCTAACTTTATTAGCCCAAGTATTGTTACCTTTACCATTCTGGTGGGATGTGTTTAATATAGCAGCTCAACTAATCAATGGTCTTCCCACACCGATTCTTTAAGACAAATCTCCAATGGAAGTATTATTAAACAAAAAACTTGATTTCACTACTCTTCGAACTTTTGGTTGTCCATGCTATCCATGTTTGAGACCTCATTAGATTAACAAATTTGATTTTCATTCAGAAAAATGTCTACTTGGGACCAAGCTCACATCACAAAGGATATAAATGTTTGAATGTTGCAGGACAAATTTTTATCTCTAGAAGTGTGAAATTTGATGAAGTAGACTTTCCCTTCTCAACCAAAACCAGTCAAAACAACTTCAACACCAAATCCACGACCCACATTTTCCTACCAGTGTTTAGCCCACCACCAACCTTTACAATGTTCAATCCAGCCCAAAATTCATCCCAATCCATTCAACCTCTACCTAGCCCATGTGACCCAACCCAATCATCTGTCAGTACTAACCCAAATCCAGGAACTCATCACCCTGTTATTGAATCTCCATCCATCCGTCAGGCCCCATCCTATTTCTAAGCCCATAGTCCACAAAATTCTCCAGCCACCAGCCTAACCTAAAACCACAATGACCCACCTAACCTAGTTGTCTCGACGCCTAACTCTCTAGACATCAAACATCTGTCGTCCTCACCCTCTTCTCCTTAGCCCCCATCACTGAACCATAGTCCAACACAAATTGCAACAACTCCACCTGCTCCGGTAACTACACTTCAGCCCACACATCCTATTACTCAAGAGAAAGCTCGGATCTTCAAACCGAAAGCTTGGATATCAAAAGTAACACATGACTGGACTGACACTGAACCTACAAGAGTAGCTAATGCCATTAAAACACCACAATGGACATCCACCATAGATCAGGAGTATGAGGCATTGATGAGGAACAAGACATGGAGGTTAGTTAACCCATCTCCCAAACTTAACATTGTCAGCAATAAATGGATCTTTTGGATCAGACGAAACACTGACGACTTTGTTTAATGCTATAAAGCACGATTAGTGGCAAGAGGGTTTCACCAAAGCTCAAGAATAATTTTCTTTAAAACCTTCAATCTGGTTGCAAAAGCCTCTACCAATCGTGTTATTATAGGTTTTTGCTGTATCCAAGCCATGGCCACTTTGACAGCTCAACTTCAACAATGTGTTTCTTAACAGTAATCTTGATGAAGAAGTCTACATGTCTAAATCTCTGGGATACGTTAACTCTCAATATCCTGACTATGTTTGTTGA

mRNA sequence

ATGACTTTAAAACTCCATGACACCATAGGTGGAAACACAACTCATGTAATCCAAGAACTGTTTGGGATTCAATCTAGGGCAGAAAAAGACTATCTTCATCAAACCTTCCAACAAACAAGGCAAGCTGGGAGCCCCGTTCCAACAAGCACACTGATCTCACAAGTCCTTCTCAAACATAATGGAGAATATAATGCCATTGTTTCCACTCTCCAAGGGAAGTCGAATATTACATGGTTGCAAATGCAATCTGAGTTACTATCATATGAGAAGAGATTGGAAGCCCAAAACACGCAAAGGAATGCAACTATAAGTAATAATCCCTCCGTAATATGGCTAATAGCAGAGGATGGACAACGTGGAGGAAACCAATTAAAAAATAGAGTTCGAGGTAGGGGCCGAAATCAACTGACATGTCAAGTTTTTGGGAAAATCGGCCACATTGCAGACATATGCTACAATCGATATAACAAGGAGTTTACTCTTAACTTCAATCCGAACAAAAAGAATAGTGGAAACACCTTCAGAAACAACAATGGAAAACCTTCTACTGCCATGGTTGCCACACACAATGGAAATTCCTTTTACACAAATTATGAAAACACAGTTGAACAAAGTTGGTATGCTGATAGTGGAGCAACCAATCATGTGATTTCAAACTACAACAACCTCACTAATCCTATGGAATATGGAGGTAATGAATTGGTAATTGTAGGTAATGGTAATACATTACAAATTGCTTCTGTTGGTAACCCAATGCTGACTAATGGAAAATATTCGTTGAATCTAAATATTATACTACATGTTTCATATATTGCTAAAACCCTTGTTAGTGTGTCCAAGTTAGCAAAGGACAATAACGTTTTGGGGCAACCAATTTTGAGGGGCATACTTAAAGATGGGCTTCATCTGGAAGAAGTCACTGTGAAATCTACTGGGTCGGTTAGAACTACTACTGCCTGTGAGTTCAAGAAGCCCCCATCACTGAACCATAGTCCAACACAAATTGCAACAACTCCACCTGCTCCGGTAACTACACTTCAGCCCACACATCCTATTACTCAAGAGAAAGCTCGGATCTTCAAACCGAAAGCTTGGATATCAAAAGTAACACATGACTGGACTGACACTGAACCTACAAGAGTAGCTAATGCCATTAAAACACCACAATGGACATCCACCATAGATCAGGAGTATGAGGCATTGATGAGGAACAAGACATGGAGGTTAGTTAACCCATCTCCCAAACTTAACATTCTCAACTTCAACAATGTGTTTCTTAACAGTAATCTTGATGAAGAAGTCTACATGTCTAAATCTCTGGGATACGTTAACTCTCAATATCCTGACTATGTTTGTTGA

Coding sequence (CDS)

ATGACTTTAAAACTCCATGACACCATAGGTGGAAACACAACTCATGTAATCCAAGAACTGTTTGGGATTCAATCTAGGGCAGAAAAAGACTATCTTCATCAAACCTTCCAACAAACAAGGCAAGCTGGGAGCCCCGTTCCAACAAGCACACTGATCTCACAAGTCCTTCTCAAACATAATGGAGAATATAATGCCATTGTTTCCACTCTCCAAGGGAAGTCGAATATTACATGGTTGCAAATGCAATCTGAGTTACTATCATATGAGAAGAGATTGGAAGCCCAAAACACGCAAAGGAATGCAACTATAAGTAATAATCCCTCCGTAATATGGCTAATAGCAGAGGATGGACAACGTGGAGGAAACCAATTAAAAAATAGAGTTCGAGGTAGGGGCCGAAATCAACTGACATGTCAAGTTTTTGGGAAAATCGGCCACATTGCAGACATATGCTACAATCGATATAACAAGGAGTTTACTCTTAACTTCAATCCGAACAAAAAGAATAGTGGAAACACCTTCAGAAACAACAATGGAAAACCTTCTACTGCCATGGTTGCCACACACAATGGAAATTCCTTTTACACAAATTATGAAAACACAGTTGAACAAAGTTGGTATGCTGATAGTGGAGCAACCAATCATGTGATTTCAAACTACAACAACCTCACTAATCCTATGGAATATGGAGGTAATGAATTGGTAATTGTAGGTAATGGTAATACATTACAAATTGCTTCTGTTGGTAACCCAATGCTGACTAATGGAAAATATTCGTTGAATCTAAATATTATACTACATGTTTCATATATTGCTAAAACCCTTGTTAGTGTGTCCAAGTTAGCAAAGGACAATAACGTTTTGGGGCAACCAATTTTGAGGGGCATACTTAAAGATGGGCTTCATCTGGAAGAAGTCACTGTGAAATCTACTGGGTCGGTTAGAACTACTACTGCCTGTGAGTTCAAGAAGCCCCCATCACTGAACCATAGTCCAACACAAATTGCAACAACTCCACCTGCTCCGGTAACTACACTTCAGCCCACACATCCTATTACTCAAGAGAAAGCTCGGATCTTCAAACCGAAAGCTTGGATATCAAAAGTAACACATGACTGGACTGACACTGAACCTACAAGAGTAGCTAATGCCATTAAAACACCACAATGGACATCCACCATAGATCAGGAGTATGAGGCATTGATGAGGAACAAGACATGGAGGTTAGTTAACCCATCTCCCAAACTTAACATTCTCAACTTCAACAATGTGTTTCTTAACAGTAATCTTGATGAAGAAGTCTACATGTCTAAATCTCTGGGATACGTTAACTCTCAATATCCTGACTATGTTTGTTGA

Protein sequence

MTLKLHDTIGGNTTHVIQELFGIQSRAEKDYLHQTFQQTRQAGSPVPTSTLISQVLLKHNGEYNAIVSTLQGKSNITWLQMQSELLSYEKRLEAQNTQRNATISNNPSVIWLIAEDGQRGGNQLKNRVRGRGRNQLTCQVFGKIGHIADICYNRYNKEFTLNFNPNKKNSGNTFRNNNGKPSTAMVATHNGNSFYTNYENTVEQSWYADSGATNHVISNYNNLTNPMEYGGNELVIVGNGNTLQIASVGNPMLTNGKYSLNLNIILHVSYIAKTLVSVSKLAKDNNVLGQPILRGILKDGLHLEEVTVKSTGSVRTTTACEFKKPPSLNHSPTQIATTPPAPVTTLQPTHPITQEKARIFKPKAWISKVTHDWTDTEPTRVANAIKTPQWTSTIDQEYEALMRNKTWRLVNPSPKLNILNFNNVFLNSNLDEEVYMSKSLGYVNSQYPDYVC
Homology
BLAST of CmUC11G214150 vs. NCBI nr
Match: TYJ99887.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 219.9 bits (559), Expect = 4.4e-53
Identity = 141/304 (46.38%), Postives = 180/304 (59.21%), Query Frame = 0

Query: 117 GQRGGNQLKNRVRGRGRNQL--TCQVFGKIGHIADICYNRYNKEFTLNFNPN-KKNSGNT 176
           G  G N  ++R RGR R     TC+V GKIGH  DICYNR+NK+F  N   N  K + N 
Sbjct: 55  GNCGNNGGQSRGRGRSRGPFCPTCEVCGKIGHTIDICYNRFNKKFVPNSGKNSNKGTTNN 114

Query: 177 FRNNNGKPSTAMVATHNGNSFYTNYENTVEQSWYADSGATNHVISNYNNLTNPMEYGGNE 236
           FRNNN K STA V +H  N F    EN+V+ +WYA++ A NH+ ++Y NL NP+EYGG  
Sbjct: 115 FRNNNDKLSTAFVTSHPANPFNVTRENSVDANWYANNRAMNHMTADYTNLANPVEYGGKV 174

Query: 237 LVIVGNGNTLQIASVGNPMLTNGKYSLNLNIILHVSYIAKTLVSVSKLAKDNNVL----- 296
            V +GNG+ L+I S+GN  L NG Y L+L+ +L+V  IAK LVSVSK A+D +V      
Sbjct: 175 QVTIGNGDKLKITSIGNSTLMNGGYMLSLDNVLYVPAIAKNLVSVSKRARDKHVFVEFHD 234

Query: 297 ----------GQPILRGILKDGL-HLEEVTVKSTGSVRTTTACEFKKPPSLNHSP----T 356
                      Q IL+G+LKD L HLEE  VK     +  T  + KK P+L  SP    T
Sbjct: 235 DYCLVKDNGTRQTILKGMLKDDLYHLEEAVVKLAAKGKRNTN-DSKKNPTLISSPLPSLT 294

Query: 357 QIATTPPAP--------VTTLQPTHP-ITQEKARIFKPKAWISKVTHDWTDTEPTRVANA 389
            + ++P  P        V   + +HP IT +KA IFKPK W+S V  DWT TEPTRV  A
Sbjct: 295 SLPSSPSDPSLSDTRPSVLPPKNSHPMITHKKAGIFKPKVWLSSVRTDWTFTEPTRVFEA 354

BLAST of CmUC11G214150 vs. NCBI nr
Match: KAA0051899.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 219.2 bits (557), Expect = 7.4e-53
Identity = 141/304 (46.38%), Postives = 180/304 (59.21%), Query Frame = 0

Query: 117 GQRGGNQLKNRVRGRGRNQL--TCQVFGKIGHIADICYNRYNKEFTLNFNPN-KKNSGNT 176
           G  G N  ++R RGR R     TC+V GKIGH  DICYNR+NK+F  N   N  K + N 
Sbjct: 55  GNCGNNGGQSRGRGRSRGPFCPTCEVCGKIGHTIDICYNRFNKKFVPNSGKNSNKGTTNN 114

Query: 177 FRNNNGKPSTAMVATHNGNSFYTNYENTVEQSWYADSGATNHVISNYNNLTNPMEYGGNE 236
           FRNNN K STA V +H  N F    EN+V+ +WYA++ A NH+ ++Y NL NP+EYGG  
Sbjct: 115 FRNNNDKLSTAFVTSHPANPFNVTRENSVDANWYANNRAMNHMTADYTNLANPVEYGGKV 174

Query: 237 LVIVGNGNTLQIASVGNPMLTNGKYSLNLNIILHVSYIAKTLVSVSKLAKDNNVL----- 296
            V +GNG+ L+I S+GN  L NG Y L+L+ +L+V  IAK LVSVSK A+D +V      
Sbjct: 175 QVTIGNGDKLKITSIGNSTLMNGGYMLSLDNVLYVPAIAKHLVSVSKRARDKHVFVEFHD 234

Query: 297 ----------GQPILRGILKDGL-HLEEVTVKSTGSVRTTTACEFKKPPSLNHSP----T 356
                      Q IL+G+LKD L HLEE  VK     +  T  + KK P+L  SP    T
Sbjct: 235 DYCLVKDNGTRQTILKGMLKDDLYHLEEAVVKLAAKGKRNTN-DSKKNPTLISSPLPSLT 294

Query: 357 QIATTPPAP--------VTTLQPTHP-ITQEKARIFKPKAWISKVTHDWTDTEPTRVANA 389
            + ++P  P        V   + +HP IT +KA IFKPK W+S V  DWT TEPTRV  A
Sbjct: 295 SLPSSPSDPSLSDTRPSVLPPKNSHPMITHKKAGIFKPKVWLSSVRTDWTFTEPTRVFEA 354

BLAST of CmUC11G214150 vs. NCBI nr
Match: TYK05754.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 209.1 bits (531), Expect = 7.7e-50
Identity = 140/350 (40.00%), Postives = 192/350 (54.86%), Query Frame = 0

Query: 18  QELFGIQSRAEKDYLHQTFQQTR---------------------QAGSPVPTSTLISQVL 77
           Q+LFG+QSRAE+D+L Q FQ TR                     QAGSPVP    ISQ L
Sbjct: 63  QDLFGVQSRAEEDFLRQMFQTTRKVRASYEDYLRIMKTNSDKLGQAGSPVPKRAFISQAL 122

Query: 78  LKHNGEYNAIVSTLQGKSNITWLQMQSELLSYEKRLEAQNTQRNATISNNPSVIWLIAED 137
           L  +  YN +++ +QGK  I+W+ MQSELL++EKRLE Q+TQ+N    N    +  IA++
Sbjct: 123 LGLDEVYNPVIAVIQGKPEISWIDMQSELLTFEKRLEHQDTQKNT--ENIIQNVVNIAQN 182

Query: 138 -----------------------GQRGGNQLKNRVRGRGR-NQLTCQVFGKIGHIADICY 197
                                  GQRGG  +  R RG+GR N+ TCQV  K GH A +CY
Sbjct: 183 RNSSDFRKYSNHQFHGNNRNNSQGQRGGFNI-GRGRGKGRGNKPTCQVCEKYGHSALVCY 242

Query: 198 NRYNKEFTLNFNPNKKNSGNTFRNNNGKPSTAMVATHNGNSFYTNYENTVEQSWYADSGA 257
           NR+NKEF    +P  ++ G    N +   +  ++ T    + +   +  +  +WY DSGA
Sbjct: 243 NRFNKEF---LSPLVQDRGAQSSNFSKHSNLTVLVTGQSVNQFATADTVINLNWYIDSGA 302

Query: 258 TNHVISNYNNLTNPMEYGGNELVIVGNGNTLQIASVGNPMLTNGKYSLNLNIILHVSYIA 307
           TNH+   Y+NL+NP EY G E ++VGNG++L I+ +GN  LT+G   LNL  +L V  I 
Sbjct: 303 TNHLTVEYSNLSNPSEYSGIEKIMVGNGDSLHISYIGNAYLTDGINGLNLKNVLCVPDIT 362

BLAST of CmUC11G214150 vs. NCBI nr
Match: XP_016902197.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo])

HSP 1 Score: 188.0 bits (476), Expect = 1.8e-43
Identity = 126/284 (44.37%), Postives = 167/284 (58.80%), Query Frame = 0

Query: 18  QELFGIQSRAEKDYLHQTFQQTRQAGSPVPTSTLISQVLLKHNGEYNAIVSTLQGKSNIT 77
           Q+ FG+QSRAE+D+L Q  Q TR+    V                YN ++  +QGK +I+
Sbjct: 145 QDFFGVQSRAEEDFLRQMLQTTRKGLDEV----------------YNLVIVVIQGKPDIS 204

Query: 78  WLQMQSELLSYEKRLEAQNTQRNAT--ISNNP--SVIWLIAEDGQRGGNQLK----NR-- 137
           WL MQS+LL +EKRL+ QNTQ+  T  I+ +P  ++    A +GQR  +  K    NR  
Sbjct: 205 WLDMQSKLLIFEKRLKHQNTQKKNTGNITQSPALNMAQRFALNGQRNQSNKKFYGYNRQH 264

Query: 138 ---VRGRGRNQLTCQVFGKIGHIADICYNRYNKEFTLNFNPNKKNSGNTFRNNNGKPSTA 197
               RG   N  TCQ+ GK GH A +CYNR+NKEF+   +P  +N      N +  P+ A
Sbjct: 265 FSGQRGNLNNGPTCQLCGKYGHSALVCYNRFNKEFS---SPLVQNRNEHSSNGSVSPNPA 324

Query: 198 M-VATHNGNSFYTNYENTVEQSWYADSGATNHVISNYNNLTNPMEYGGNELVIVGNGNTL 257
           + V+T N   F T  +  V+ +WY DSGATNHV    +N+TNP EY G E V VGNGN L
Sbjct: 325 VFVSTQNATPFATP-DTVVDPNWYIDSGATNHVTRECSNMTNPTEYSGIEKVTVGNGNRL 384

Query: 258 QIASVGNPMLTNGKYSLNLNIILHVSYIAKTLVSVSKLAKDNNV 288
            I+ VGN  LT+G  SL L  IL V  IAK L+SVSKLA+DN++
Sbjct: 385 NISYVGNTCLTDGDKSLVLKNILCVPDIAKNLISVSKLAQDNHI 408

BLAST of CmUC11G214150 vs. NCBI nr
Match: XP_038905161.1 (uncharacterized protein LOC120091275 isoform X1 [Benincasa hispida])

HSP 1 Score: 180.3 bits (456), Expect = 3.8e-41
Identity = 124/298 (41.61%), Postives = 162/298 (54.36%), Query Frame = 0

Query: 17  IQELFGIQSRAEKDYLHQTFQQTR---------------------QAGSPVPTSTLISQV 76
           I +LFG+QSR E+DYL   FQ TR                     QAGSP+P  TL+SQV
Sbjct: 85  IPQLFGVQSRVEEDYLRHVFQTTRKGNLKMEEYLQTMKMNTDNLEQAGSPMPPRTLVSQV 144

Query: 77  LLKHNGEYNAIVSTLQGKSNITWLQMQSELLSYEKRLEAQNTQR---------------- 136
           LL  + EYNAIV+ +QG+ +++WL MQSELL YE+RLE Q+ Q+                
Sbjct: 145 LLGLDEEYNAIVAMIQGRVDMSWLDMQSELLLYERRLEHQSNQKTTVGFNQISNASVNMT 204

Query: 137 --------NATISNNPSVIWLIAEDGQRGGNQLKNRVRGRGRN--QLTCQVFGKIGHIAD 196
                   N T S+N S+       GQRGG     R RGRGRN  +  CQV GK+GHIA 
Sbjct: 205 NTRHVNQNNKTNSSNQSI-----GGGQRGGGG-HGRGRGRGRNNKKPVCQVCGKVGHIAF 264

Query: 197 ICYNRYNKEFTLNFNPNKKNSGNTFRNNNGKP-STAMVATHNGNSFYTNYENTVEQSWYA 256
            C+NRY+++F  N   NK       +  N +P  TA+   +  N F T  EN  + +WY 
Sbjct: 265 YCFNRYSRDFVPNSPQNKVEPFPNNQTKNTQPHPTALAIAYGSNPFLTRQENMTDANWY- 324

Query: 257 DSGATNHVISNYNNLTNPMEYGGNELVIVGNGNTLQIASVGNPMLTNGKYSLNLNIIL 267
           DSGA+NHV S++NNL NP+EY        G GNTL I+ VG   L++   +L LN +L
Sbjct: 325 DSGASNHVTSDFNNLGNPIEYS-------GTGNTLVISHVGTVCLSSDACNLKLNDML 368

BLAST of CmUC11G214150 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 5.4e-14
Identity = 78/310 (25.16%), Postives = 126/310 (40.65%), Query Frame = 0

Query: 36  FQQTRQAGSPVPTSTLISQVLLKHNGEYNAIVSTLQGKSNITWL-QMQSELLSYEKRLEA 95
           F Q    G P+     + +VL     +Y  ++  +  K     L ++   L++ E +L A
Sbjct: 134 FDQLALLGKPMDHDEQVERVLENLPDDYKPVIDQIAAKDTPPSLTEIHERLINRESKLLA 193

Query: 96  QNT---------------------------QRNATISNNPSVIWLIAEDGQRGGNQLKNR 155
            N+                            RN   +NN S  W  +  G R  N+    
Sbjct: 194 LNSAEVVPITANVVTHRNTNTNRNQNNRGDNRNYNNNNNRSNSWQPSSSGSRSDNRQPKP 253

Query: 156 VRGRGRNQLTCQVFGKIGHIADICYNRYNKEFTLNFNPNKKNSGNTFRNNNGKPSTAMVA 215
             GR      CQ+    GH A  C   +  + T     N++ S + F     + + A+ +
Sbjct: 254 YLGR------CQICSVQGHSAKRCPQLHQFQST----TNQQQSTSPFTPWQPRANLAVNS 313

Query: 216 THNGNSFYTNYENTVEQSWYADSGATNHVISNYNNLTNPMEYGGNELVIVGNGNTLQIAS 275
            +N N            +W  DSGAT+H+ S++NNL+    Y G + V++ +G+T+ I  
Sbjct: 314 PYNAN------------NWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITH 373

Query: 276 VGNPMLTNGKYSLNLNIILHVSYIAKTLVSVSKLAKDNNV---------------LGQPI 303
            G+  L     SL+LN +L+V  I K L+SV +L   N V                G P+
Sbjct: 374 TGSASLPTSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPL 421


HSP 2 Score: 42.0 bits (97), Expect = 2.1e-02
Identity = 20/43 (46.51%), Postives = 27/43 (62.79%), Query Frame = 0

Query: 410  VNPSPKLNILNFNNVFLNSNLDEEVYMSKSLGYVNSQYPDYVC 453
            V+ S  +  L+ NN FL   L +EVYMS+  G+V+   PDYVC
Sbjct: 1038 VDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVC 1080

BLAST of CmUC11G214150 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 6.9e-09
Identity = 101/422 (23.93%), Postives = 159/422 (37.68%), Query Frame = 0

Query: 36  FQQTRQAGSPVPTSTLISQVLLKHNGEYNAIVSTLQGKSN-ITWLQMQSELLSYEKRLEA 95
           F Q    G P+     + +VL     EY  ++  +  K    T  ++   LL++E ++ A
Sbjct: 153 FDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIHERLLNHESKILA 212

Query: 96  QN------------TQRNATISNNPSVIWLIAEDGQRGGNQLKNRVRGRGRNQLT----- 155
            +            + RN T +NN              GN+  NR   R  N  +     
Sbjct: 213 VSSATVIPITANAVSHRNTTTTNN-----------NNNGNR-NNRYDNRNNNNNSKPWQQ 272

Query: 156 ------------------CQVFGKIGHIADICYNRYNKEFTLNFNPNKKNSGNTFRNNNG 215
                             CQ+ G  GH A  C     + F  + N  +  S   F     
Sbjct: 273 SSTNFHPNNNQSKPYLGKCQICGVQGHSAKRCSQL--QHFLSSVNSQQPPS--PFTPWQP 332

Query: 216 KPSTAMVATHNGNSFYTNYENTVEQSWYADSGATNHVISNYNNLTNPMEYGGNELVIVGN 275
           + + A+ + ++ N            +W  DSGAT+H+ S++NNL+    Y G + V+V +
Sbjct: 333 RANLALGSPYSSN------------NWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVAD 392

Query: 276 GNTLQIASVGNPMLTNGKYSLNLNIILHVSYIAKTLVSVSKLAKDNNV------------ 335
           G+T+ I+  G+  L+     LNL+ IL+V  I K L+SV +L   N V            
Sbjct: 393 GSTIPISHTGSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVK 452

Query: 336 ---LGQPILRGILKDGLHLEEVTVKSTGSVRTTTACEFKKPPS-LNHSPTQIATTPPAP- 395
               G P+L+G  KD L+  E  + S+  V       F  P S   HS        PAP 
Sbjct: 453 DLNTGVPLLQGKTKDELY--EWPIASSQPVSL-----FASPSSKATHSSWHARLGHPAPS 512

BLAST of CmUC11G214150 vs. ExPASy TrEMBL
Match: A0A5D3BL83 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2042G00070 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.1e-53
Identity = 141/304 (46.38%), Postives = 180/304 (59.21%), Query Frame = 0

Query: 117 GQRGGNQLKNRVRGRGRNQL--TCQVFGKIGHIADICYNRYNKEFTLNFNPN-KKNSGNT 176
           G  G N  ++R RGR R     TC+V GKIGH  DICYNR+NK+F  N   N  K + N 
Sbjct: 55  GNCGNNGGQSRGRGRSRGPFCPTCEVCGKIGHTIDICYNRFNKKFVPNSGKNSNKGTTNN 114

Query: 177 FRNNNGKPSTAMVATHNGNSFYTNYENTVEQSWYADSGATNHVISNYNNLTNPMEYGGNE 236
           FRNNN K STA V +H  N F    EN+V+ +WYA++ A NH+ ++Y NL NP+EYGG  
Sbjct: 115 FRNNNDKLSTAFVTSHPANPFNVTRENSVDANWYANNRAMNHMTADYTNLANPVEYGGKV 174

Query: 237 LVIVGNGNTLQIASVGNPMLTNGKYSLNLNIILHVSYIAKTLVSVSKLAKDNNVL----- 296
            V +GNG+ L+I S+GN  L NG Y L+L+ +L+V  IAK LVSVSK A+D +V      
Sbjct: 175 QVTIGNGDKLKITSIGNSTLMNGGYMLSLDNVLYVPAIAKNLVSVSKRARDKHVFVEFHD 234

Query: 297 ----------GQPILRGILKDGL-HLEEVTVKSTGSVRTTTACEFKKPPSLNHSP----T 356
                      Q IL+G+LKD L HLEE  VK     +  T  + KK P+L  SP    T
Sbjct: 235 DYCLVKDNGTRQTILKGMLKDDLYHLEEAVVKLAAKGKRNTN-DSKKNPTLISSPLPSLT 294

Query: 357 QIATTPPAP--------VTTLQPTHP-ITQEKARIFKPKAWISKVTHDWTDTEPTRVANA 389
            + ++P  P        V   + +HP IT +KA IFKPK W+S V  DWT TEPTRV  A
Sbjct: 295 SLPSSPSDPSLSDTRPSVLPPKNSHPMITHKKAGIFKPKVWLSSVRTDWTFTEPTRVFEA 354

BLAST of CmUC11G214150 vs. ExPASy TrEMBL
Match: A0A5A7UEH3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G003510 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 3.6e-53
Identity = 141/304 (46.38%), Postives = 180/304 (59.21%), Query Frame = 0

Query: 117 GQRGGNQLKNRVRGRGRNQL--TCQVFGKIGHIADICYNRYNKEFTLNFNPN-KKNSGNT 176
           G  G N  ++R RGR R     TC+V GKIGH  DICYNR+NK+F  N   N  K + N 
Sbjct: 55  GNCGNNGGQSRGRGRSRGPFCPTCEVCGKIGHTIDICYNRFNKKFVPNSGKNSNKGTTNN 114

Query: 177 FRNNNGKPSTAMVATHNGNSFYTNYENTVEQSWYADSGATNHVISNYNNLTNPMEYGGNE 236
           FRNNN K STA V +H  N F    EN+V+ +WYA++ A NH+ ++Y NL NP+EYGG  
Sbjct: 115 FRNNNDKLSTAFVTSHPANPFNVTRENSVDANWYANNRAMNHMTADYTNLANPVEYGGKV 174

Query: 237 LVIVGNGNTLQIASVGNPMLTNGKYSLNLNIILHVSYIAKTLVSVSKLAKDNNVL----- 296
            V +GNG+ L+I S+GN  L NG Y L+L+ +L+V  IAK LVSVSK A+D +V      
Sbjct: 175 QVTIGNGDKLKITSIGNSTLMNGGYMLSLDNVLYVPAIAKHLVSVSKRARDKHVFVEFHD 234

Query: 297 ----------GQPILRGILKDGL-HLEEVTVKSTGSVRTTTACEFKKPPSLNHSP----T 356
                      Q IL+G+LKD L HLEE  VK     +  T  + KK P+L  SP    T
Sbjct: 235 DYCLVKDNGTRQTILKGMLKDDLYHLEEAVVKLAAKGKRNTN-DSKKNPTLISSPLPSLT 294

Query: 357 QIATTPPAP--------VTTLQPTHP-ITQEKARIFKPKAWISKVTHDWTDTEPTRVANA 389
            + ++P  P        V   + +HP IT +KA IFKPK W+S V  DWT TEPTRV  A
Sbjct: 295 SLPSSPSDPSLSDTRPSVLPPKNSHPMITHKKAGIFKPKVWLSSVRTDWTFTEPTRVFEA 354

BLAST of CmUC11G214150 vs. ExPASy TrEMBL
Match: A0A5D3C373 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002430 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 3.7e-50
Identity = 140/350 (40.00%), Postives = 192/350 (54.86%), Query Frame = 0

Query: 18  QELFGIQSRAEKDYLHQTFQQTR---------------------QAGSPVPTSTLISQVL 77
           Q+LFG+QSRAE+D+L Q FQ TR                     QAGSPVP    ISQ L
Sbjct: 63  QDLFGVQSRAEEDFLRQMFQTTRKVRASYEDYLRIMKTNSDKLGQAGSPVPKRAFISQAL 122

Query: 78  LKHNGEYNAIVSTLQGKSNITWLQMQSELLSYEKRLEAQNTQRNATISNNPSVIWLIAED 137
           L  +  YN +++ +QGK  I+W+ MQSELL++EKRLE Q+TQ+N    N    +  IA++
Sbjct: 123 LGLDEVYNPVIAVIQGKPEISWIDMQSELLTFEKRLEHQDTQKNT--ENIIQNVVNIAQN 182

Query: 138 -----------------------GQRGGNQLKNRVRGRGR-NQLTCQVFGKIGHIADICY 197
                                  GQRGG  +  R RG+GR N+ TCQV  K GH A +CY
Sbjct: 183 RNSSDFRKYSNHQFHGNNRNNSQGQRGGFNI-GRGRGKGRGNKPTCQVCEKYGHSALVCY 242

Query: 198 NRYNKEFTLNFNPNKKNSGNTFRNNNGKPSTAMVATHNGNSFYTNYENTVEQSWYADSGA 257
           NR+NKEF    +P  ++ G    N +   +  ++ T    + +   +  +  +WY DSGA
Sbjct: 243 NRFNKEF---LSPLVQDRGAQSSNFSKHSNLTVLVTGQSVNQFATADTVINLNWYIDSGA 302

Query: 258 TNHVISNYNNLTNPMEYGGNELVIVGNGNTLQIASVGNPMLTNGKYSLNLNIILHVSYIA 307
           TNH+   Y+NL+NP EY G E ++VGNG++L I+ +GN  LT+G   LNL  +L V  I 
Sbjct: 303 TNHLTVEYSNLSNPSEYSGIEKIMVGNGDSLHISYIGNAYLTDGINGLNLKNVLCVPDIT 362

BLAST of CmUC11G214150 vs. ExPASy TrEMBL
Match: A0A1S4E1U6 (uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 8.9e-44
Identity = 126/284 (44.37%), Postives = 167/284 (58.80%), Query Frame = 0

Query: 18  QELFGIQSRAEKDYLHQTFQQTRQAGSPVPTSTLISQVLLKHNGEYNAIVSTLQGKSNIT 77
           Q+ FG+QSRAE+D+L Q  Q TR+    V                YN ++  +QGK +I+
Sbjct: 145 QDFFGVQSRAEEDFLRQMLQTTRKGLDEV----------------YNLVIVVIQGKPDIS 204

Query: 78  WLQMQSELLSYEKRLEAQNTQRNAT--ISNNP--SVIWLIAEDGQRGGNQLK----NR-- 137
           WL MQS+LL +EKRL+ QNTQ+  T  I+ +P  ++    A +GQR  +  K    NR  
Sbjct: 205 WLDMQSKLLIFEKRLKHQNTQKKNTGNITQSPALNMAQRFALNGQRNQSNKKFYGYNRQH 264

Query: 138 ---VRGRGRNQLTCQVFGKIGHIADICYNRYNKEFTLNFNPNKKNSGNTFRNNNGKPSTA 197
               RG   N  TCQ+ GK GH A +CYNR+NKEF+   +P  +N      N +  P+ A
Sbjct: 265 FSGQRGNLNNGPTCQLCGKYGHSALVCYNRFNKEFS---SPLVQNRNEHSSNGSVSPNPA 324

Query: 198 M-VATHNGNSFYTNYENTVEQSWYADSGATNHVISNYNNLTNPMEYGGNELVIVGNGNTL 257
           + V+T N   F T  +  V+ +WY DSGATNHV    +N+TNP EY G E V VGNGN L
Sbjct: 325 VFVSTQNATPFATP-DTVVDPNWYIDSGATNHVTRECSNMTNPTEYSGIEKVTVGNGNRL 384

Query: 258 QIASVGNPMLTNGKYSLNLNIILHVSYIAKTLVSVSKLAKDNNV 288
            I+ VGN  LT+G  SL L  IL V  IAK L+SVSKLA+DN++
Sbjct: 385 NISYVGNTCLTDGDKSLVLKNILCVPDIAKNLISVSKLAQDNHI 408

BLAST of CmUC11G214150 vs. ExPASy TrEMBL
Match: A0A5D3BEZ6 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00640 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 7.3e-38
Identity = 145/467 (31.05%), Postives = 200/467 (42.83%), Query Frame = 0

Query: 46  VPTSTLISQVLLKHNGEYNAIVSTLQGKSNITWLQMQSELLSYEKRLEAQNTQRNATISN 105
           V  S L  +VLL+ +  YN +++ +QGK  I+W+ MQSELL +EKRLE QN Q+N     
Sbjct: 16  VRCSKLPEKVLLRLDQVYNPVITIIQGKPEISWIDMQSELLIFEKRLEHQNFQKNT---- 75

Query: 106 NPSVIWLIAEDGQRGGNQLKNRVRGRGRNQLTCQVFGKIGHIADICYNRYNKEFTLNFNP 165
                          GN ++N             V GK GH A +CYNR+NKEF      
Sbjct: 76  ---------------GNIIQN-----------AAVCGKYGHSALVCYNRFNKEFLSPLVQ 135

Query: 166 NKKNSGNTFRNNNGKPSTAMVATHNGNSFYTNYENTVEQSWYADSGATNHVISNYNNLTN 225
           ++    + F   +    TA+V   + N F T  +  ++ +WY DSGATNHV + Y+NL+N
Sbjct: 136 DRAGKSSNFSGPSN--PTALVIGQSVNQFAT-ADTVIDPNWYIDSGATNHVTAEYSNLSN 195

Query: 226 PMEYGGNELVIVGNGNTLQIASVGNPMLTNGKYSLNLNIILHVSYIAKTLVSVSKLAKDN 285
           P EY                        TN               +A + V+V K     
Sbjct: 196 PSEYSRG---------------------TN---------------LANSCVAVPKTVWHK 255

Query: 286 NVLGQP---ILRGILKDGLHLEEVTVKSTGSVRTTTACEFKKPPSLNHSPTQI-ATTP-- 345
             LG P   +L  ++K+        VK    V    +C+  K  +L    +Q  AT P  
Sbjct: 256 R-LGHPSSKVLNSVIKNC----NFPVKDNFDVEFCDSCQLGKAHNLPFPKSQSHATAPFN 315

Query: 346 --------PAPVTT-------LQPTHPITQEKARIFKPKAWISKVTHDWTDTEPTRVANA 405
                   PAPV +       +      ++ K+ IFKPKAW+   + +WT TEPT   +A
Sbjct: 316 LVYSDLWGPAPVCSTDSFRYYIMFVDDYSRAKSGIFKPKAWVHSSSFNWTLTEPTNFHDA 375

Query: 406 IKTPQWTSTIDQEYEALMRNKTWRLVNPSPKLNI-------------------------- 453
           I T QW    D EY  L++NKTW LV  +   NI                          
Sbjct: 376 IATSQWKPAKDVEYTTLLQNKTWSLVPSTSSSNIIGCKWVFRLKRNSDGPMVKASTINVV 408

BLAST of CmUC11G214150 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 46.2 bits (108), Expect = 8.0e-05
Identity = 29/74 (39.19%), Postives = 35/74 (47.30%), Query Frame = 0

Query: 352 ITQEKARIFKPKAWISKVTHDWTDTEPTRVANAIKTPQWTSTIDQEYEALMRNKTWRLVN 411
           +T+ KA I K     S         EP  V  A+K P W   + +E +AL RNKTW LV 
Sbjct: 2   LTRSKAGINKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVP 61

Query: 412 PSPKLNILNFNNVF 426
           P    NIL    VF
Sbjct: 62  PPVNQNILGCKWVF 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYJ99887.14.4e-5346.38Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0051899.17.4e-5346.38Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
TYK05754.17.7e-5040.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
XP_016902197.11.8e-4344.37PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo][more]
XP_038905161.13.8e-4141.61uncharacterized protein LOC120091275 isoform X1 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Q9ZT945.4e-1425.16Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Q94HW26.9e-0923.93Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Match NameE-valueIdentityDescription
A0A5D3BL832.1e-5346.38Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7UEH33.6e-5346.38Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3C3733.7e-5040.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A1S4E1U68.9e-4444.37uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A5D3BEZ67.3e-3831.05Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
Match NameE-valueIdentityDescription
ATMG00820.18.0e-0539.19Reverse transcriptase (RNA-dependent DNA polymerase) [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR47481FAMILY NOT NAMEDcoord: 81..276

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC11G214150.1CmUC11G214150.1mRNA