CmUC11G213780 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC11G213780
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	DNA-directed DNA polymerase
Location	CmU531Chr11: 16528844 .. 16529212 (+)
RNA-Seq Expression	CmUC11G213780
Synteny	CmUC11G213780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTTGAGAAAGCCTGTGAGAAACGCGTTTTAGAACTCAATGAGATGGAGGAGTTCCGTGCTCAAGCTTATAAGAATGCCAAACTTTACAAAGAGCGCACTGCGAGATGGCATGACAAGAAGATCACATCACGAACCTTCCTTCCAGGACAAAGAGTATTACTTTTTAACTCACGTTTACGCTTGTTTCCAGGTAAGCTTAGGACACGATGGTCGGGACCCTTTGTTATTGTCAAGGTATCCCCACACGGAGCCGTGGAACTACAAGGTAACAATGGAACAACTTTTAAAGTGAATAGTCAACGATTAAAGCACTACATACGGGATGAAGAACGCAGACTTGAGAACCTGACTTTTATTGCATGA

mRNA sequence

ATGGATTTTGAGAAAGCCTGTGAGAAACGCGTTTTAGAACTCAATGAGATGGAGGAGTTCCGTGCTCAAGCTTATAAGAATGCCAAACTTTACAAAGAGCGCACTGCGAGATGGCATGACAAGAAGATCACATCACGAACCTTCCTTCCAGGACAAAGAGTATTACTTTTTAACTCACGTTTACGCTTGTTTCCAGGTAAGCTTAGGACACGATGGTCGGGACCCTTTGTTATTGTCAAGGTATCCCCACACGGAGCCGTGGAACTACAAGGTAACAATGGAACAACTTTTAAAGTGAATAGTCAACGATTAAAGCACTACATACGGGATGAAGAACGCAGACTTGAGAACCTGACTTTTATTGCATGA

Coding sequence (CDS)

ATGGATTTTGAGAAAGCCTGTGAGAAACGCGTTTTAGAACTCAATGAGATGGAGGAGTTCCGTGCTCAAGCTTATAAGAATGCCAAACTTTACAAAGAGCGCACTGCGAGATGGCATGACAAGAAGATCACATCACGAACCTTCCTTCCAGGACAAAGAGTATTACTTTTTAACTCACGTTTACGCTTGTTTCCAGGTAAGCTTAGGACACGATGGTCGGGACCCTTTGTTATTGTCAAGGTATCCCCACACGGAGCCGTGGAACTACAAGGTAACAATGGAACAACTTTTAAAGTGAATAGTCAACGATTAAAGCACTACATACGGGATGAAGAACGCAGACTTGAGAACCTGACTTTTATTGCATGA

Protein sequence

MDFEKACEKRVLELNEMEEFRAQAYKNAKLYKERTARWHDKKITSRTFLPGQRVLLFNSRLRLFPGKLRTRWSGPFVIVKVSPHGAVELQGNNGTTFKVNSQRLKHYIRDEERRLENLTFIA

Homology

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BLAST of CmUC11G213780 vs. NCBI nr
Match: WP_217833156.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 216.5 bits (550), Expect = 1.3e-52
Identity = 107/122 (87.70%), Postives = 112/122 (91.80%), Query Frame = 0


Query: 1   MDFEKACEKRVLELNEMEEFRAQAYKNAKLYKERTARWHDKKITSRTFLPGQRVLLFNSR 60
           MDFEKA EKR+LELNEMEEFRAQAY+NAKLYK+RTARWHDKKIT  TFLP QR+LLFNSR
Sbjct: 473 MDFEKAGEKRLLELNEMEEFRAQAYENAKLYKKRTARWHDKKITPGTFLPRQRLLLFNSR 532

Query: 61  LRLFPGKLRTRWSGPFVIVKVSPHGAVELQGNNGTTFKVNSQRLKHYIRDEERRLENLTF 120
           LRLFPGKLRTRWSGPF+IVKVSPHGAVELQGNNGTTFKVN  RLKHYI DEER LENL F
Sbjct: 533 LRLFPGKLRTRWSGPFIIVKVSPHGAVELQGNNGTTFKVNGLRLKHYIGDEERVLENLAF 592

Query: 121 IA 123
            A
Sbjct: 593 TA 594

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BLAST of CmUC11G213780 vs. NCBI nr
Match: XP_038885822.1 (uncharacterized protein LOC120076116 [Benincasa hispida])

HSP 1 Score: 173.7 bits (439), Expect = 9.7e-40
Identity = 86/117 (73.50%), Postives = 95/117 (81.20%), Query Frame = 0


Query: 4   EKACEKRVLELNEMEEFRAQAYKNAKLYKERTARWHDKKITSRTFLPGQRVLLFNSRLRL 63
           +K  EKR+LEL E+EEF  QAY+NAKLYKER ARWHDKKI   TF  GQ VLLFNSRLRL
Sbjct: 46  QKVGEKRLLELAELEEFHDQAYENAKLYKERIARWHDKKIIHHTFDLGQSVLLFNSRLRL 105

Query: 64  FPGKLRTRWSGPFVIVKVSPHGAVELQGNNGTTFKVNSQRLKHYIRDEERRLENLTF 121
           FP KLRTRW GPFV+VK SPHGAVE+QG +G  FKVN QRL+HY  DEER+LENL F
Sbjct: 106 FPSKLRTRWLGPFVVVKDSPHGAVEVQGEDGLRFKVNGQRLEHYCGDEERKLENLVF 162

[Close]

BLAST of CmUC11G213780 vs. NCBI nr
Match: XP_038885946.1 (uncharacterized protein LOC120076251 [Benincasa hispida])

HSP 1 Score: 162.2 bits (409), Expect = 2.9e-36
Identity = 77/111 (69.37%), Postives = 92/111 (82.88%), Query Frame = 0


Query: 2   DFEKACEKRVLELNEMEEFRAQAYKNAKLYKERTARWHDKKITSRTFLPGQRVLLFNSRL 61
           D + A + R+L+LNEMEEF+ QAY+N+K+YKERT +WHD  I  R FLPGQRVLLFNSRL
Sbjct: 40  DLQIAGKHRLLQLNEMEEFQNQAYENSKIYKERTTKWHDNWIVPRAFLPGQRVLLFNSRL 99

Query: 62  RLFPGKLRTRWSGPFVIVKVSPHGAVELQGNNGTTFKVNSQRLKHYIRDEE 113
           RLFPGKL++RW GPFVI  V+P+ AVEL G +GTTFKVN+QRLKHY  DEE
Sbjct: 100 RLFPGKLKSRWFGPFVIKDVTPYDAVELHGKDGTTFKVNAQRLKHYCGDEE 150

[Close]

BLAST of CmUC11G213780 vs. NCBI nr
Match: XP_030498073.1 (uncharacterized protein LOC115713732 [Cannabis sativa])

HSP 1 Score: 154.5 bits (389), Expect = 6.1e-34
Identity = 70/108 (64.81%), Postives = 91/108 (84.26%), Query Frame = 0


Query: 1   MDFEKACEKRVLELNEMEEFRAQAYKNAKLYKERTARWHDKKITSRTFLPGQRVLLFNSR 60
           M+ + A EKR+L+LNE+EEFR +AY+NAK+YKERT +WHD+ +  + F PGQ+VLLFNSR
Sbjct: 427 MELKAAGEKRLLQLNELEEFRNEAYENAKIYKERTKKWHDQGLVRKEFQPGQQVLLFNSR 486

Query: 61  LRLFPGKLRTRWSGPFVIVKVSPHGAVELQGNNGTTFKVNSQRLKHYI 109
           L+LFPGKL++RWSGPF +VKV P+GAVEL+G+   TFKVN QRLK Y+
Sbjct: 487 LKLFPGKLKSRWSGPFTVVKVFPYGAVELKGDGPATFKVNGQRLKFYL 534

[Close]

BLAST of CmUC11G213780 vs. NCBI nr
Match: XP_030504949.1 (uncharacterized protein LOC115719915 [Cannabis sativa])

HSP 1 Score: 154.5 bits (389), Expect = 6.1e-34
Identity = 70/108 (64.81%), Postives = 92/108 (85.19%), Query Frame = 0


Query: 1   MDFEKACEKRVLELNEMEEFRAQAYKNAKLYKERTARWHDKKITSRTFLPGQRVLLFNSR 60
           M+ + A EKR+L+LNE++EFR +AY+NAK+YKERT +WHD+ +  + F PGQ+VLLFNSR
Sbjct: 31  MELKAAWEKRLLQLNELDEFRNEAYENAKIYKERTKKWHDQGLIRKQFQPGQQVLLFNSR 90

Query: 61  LRLFPGKLRTRWSGPFVIVKVSPHGAVELQGNNGTTFKVNSQRLKHYI 109
           L+LFPGKL++RWSGPF +VKV P+GAVEL+G + TTFKVN QRLK Y+
Sbjct: 91  LKLFPGKLKSRWSGPFTVVKVFPYGAVELKGESPTTFKVNGQRLKLYL 138

[Close]

BLAST of CmUC11G213780 vs. ExPASy TrEMBL
Match: A0A2G9H400 (Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_15163 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 5.0e-34
Identity = 73/107 (68.22%), Postives = 88/107 (82.24%), Query Frame = 0


Query: 2    DFEKACEKRVLELNEMEEFRAQAYKNAKLYKERTARWHDKKITSRTFLPGQRVLLFNSRL 61
            D + A EKR+L+LNE++EFR QAY+NAK+YKE+T RWHDKKI  R F PGQ VLLFNSRL
Sbjct: 1282 DMQVAGEKRLLQLNELDEFRLQAYENAKIYKEKTKRWHDKKIVERRFEPGQYVLLFNSRL 1341

Query: 62   RLFPGKLRTRWSGPFVIVKVSPHGAVELQGNNG-TTFKVNSQRLKHY 108
            +LFPGKL++RWSGPF I +V PHGAVEL+  N    FKVN+QR+KHY
Sbjct: 1342 KLFPGKLKSRWSGPFRITEVFPHGAVELENKNSRNRFKVNAQRIKHY 1388

[Close]

BLAST of CmUC11G213780 vs. ExPASy TrEMBL
Match: A0A2G9HBV9 (DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_12579 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 4.2e-33
Identity = 71/107 (66.36%), Postives = 87/107 (81.31%), Query Frame = 0


Query: 2    DFEKACEKRVLELNEMEEFRAQAYKNAKLYKERTARWHDKKITSRTFLPGQRVLLFNSRL 61
            D + A EKR+L+LNE++EFR QAY+NAK+YKE+T RWHDKKI  R F PGQ VLLFNSRL
Sbjct: 1152 DMQAAGEKRLLQLNELDEFRLQAYENAKIYKEKTKRWHDKKIVERRFEPGQYVLLFNSRL 1211

Query: 62   RLFPGKLRTRWSGPFVIVKVSPHGAVELQGNNG-TTFKVNSQRLKHY 108
            +LFPGKL++RWSGPF + +V  HGAVEL+  N    FKVN+QR+KHY
Sbjct: 1212 KLFPGKLKSRWSGPFRVTEVFSHGAVELENENSKNRFKVNAQRIKHY 1258

[Close]

BLAST of CmUC11G213780 vs. ExPASy TrEMBL
Match: A0A2G9HWL8 (DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_05423 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 4.2e-33
Identity = 71/107 (66.36%), Postives = 87/107 (81.31%), Query Frame = 0


Query: 2    DFEKACEKRVLELNEMEEFRAQAYKNAKLYKERTARWHDKKITSRTFLPGQRVLLFNSRL 61
            D + A EKR+L+LNE+++FR QAY+N K+YKE+T RWHDKKI  R F PGQ VLLFNSRL
Sbjct: 1192 DMQAAGEKRLLQLNELDKFRLQAYENTKIYKEKTKRWHDKKIVERHFEPGQYVLLFNSRL 1251

Query: 62   RLFPGKLRTRWSGPFVIVKVSPHGAVELQGNNG-TTFKVNSQRLKHY 108
            +LFPGKL++ WSGPF I +V PHGAVEL+  N  T FKVN+QR+KHY
Sbjct: 1252 KLFPGKLKSHWSGPFRITEVFPHGAVELENENSRTRFKVNAQRIKHY 1298

[Close]

BLAST of CmUC11G213780 vs. ExPASy TrEMBL
Match: A0A1S4DFS8 (uncharacterized protein LOC107829365 OS=Nicotiana tabacum OX=4097 GN=LOC107829365 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 5.5e-33
Identity = 73/108 (67.59%), Postives = 87/108 (80.56%), Query Frame = 0


Query: 1   MDFEKACEKRVLELNEMEEFRAQAYKNAKLYKERTARWHDKKITSRTFLPGQRVLLFNSR 60
           MD + A EKR+L+LNE++EFR  AY+NAKLYK +T RWHDK I  R F PGQ VLLFNSR
Sbjct: 396 MDGDLAGEKRLLQLNELDEFRLHAYENAKLYKVKTKRWHDKHIQHREFEPGQEVLLFNSR 455

Query: 61  LRLFPGKLRTRWSGPFVIVKVSPHGAVELQGNNGT-TFKVNSQRLKHY 108
           L+LFPGKL++RWSGPFV+V V PHGAVEL+  + T TF VN QR+KHY
Sbjct: 456 LKLFPGKLKSRWSGPFVVVSVKPHGAVELRDMSSTGTFLVNGQRIKHY 503

[Close]

BLAST of CmUC11G213780 vs. ExPASy TrEMBL
Match: A0A2G9HWC5 (DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_05521 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 7.2e-33
Identity = 71/103 (68.93%), Postives = 85/103 (82.52%), Query Frame = 0


Query: 6    ACEKRVLELNEMEEFRAQAYKNAKLYKERTARWHDKKITSRTFLPGQRVLLFNSRLRLFP 65
            A EKR+L+LNE++EFR  AY+NAK+YKE+T RWHDKKI  R F PGQ VLLFNSRL+LFP
Sbjct: 1175 AGEKRLLQLNELDEFRLHAYENAKIYKEKTKRWHDKKIVERRFEPGQYVLLFNSRLKLFP 1234

Query: 66   GKLRTRWSGPFVIVKVSPHGAVELQGNNG-TTFKVNSQRLKHY 108
            GKL++RWSGPF I +V PHGAVEL+  N    FKVN+QR+KHY
Sbjct: 1235 GKLKSRWSGPFRITEVFPHGAVELENENSRNRFKVNAQRIKHY 1277

The following BLAST results are available for this feature:

BLAST of CmUC11G213780 vs. NCBI nr


Match Name	E-value	Identity	Description
WP_217833156.1	1.3e-52	87.70	hypothetical protein, partial [Synechococcus sp. PCC 7002]	[more]
XP_038885822.1	9.7e-40	73.50	uncharacterized protein LOC120076116 [Benincasa hispida]	[more]
XP_038885946.1	2.9e-36	69.37	uncharacterized protein LOC120076251 [Benincasa hispida]	[more]
XP_030498073.1	6.1e-34	64.81	uncharacterized protein LOC115713732 [Cannabis sativa]	[more]
XP_030504949.1	6.1e-34	64.81	uncharacterized protein LOC115719915 [Cannabis sativa]	[more]

BLAST of CmUC11G213780 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC11G213780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2G9H400	5.0e-34	68.22	Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_15163 PE=...	[more]
A0A2G9HBV9	4.2e-33	66.36	DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_125...	[more]
A0A2G9HWL8	4.2e-33	66.36	DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_054...	[more]
A0A1S4DFS8	5.5e-33	67.59	uncharacterized protein LOC107829365 OS=Nicotiana tabacum OX=4097 GN=LOC10782936...	[more]
A0A2G9HWC5	7.2e-33	68.93	DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_055...	[more]

BLAST of CmUC11G213780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 9..95
None	No IPR available	PANTHER	PTHR24559:SF334	SUBFAMILY NOT NAMED	coord: 9..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC11G213780.1	CmUC11G213780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding