CmUC11G213010 (gene) Watermelon (USVL531) v1

Overview
NameCmUC11G213010
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionRetrotransposon protein
LocationCmU531Chr11: 12718354 .. 12725457 (-)
RNA-Seq ExpressionCmUC11G213010
SyntenyCmUC11G213010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGGCCCAGGCTGTAGTGGGTTTGGGTGGAATGCGGAGCGCAAATGTATTGATTGTGAGGCGGAGATATTTGACGCATGGGTCAAGGTAATTTAATTACATGTTTTATTCTTCGTTTAAATTTGTATAGGTCATAACATAACACAAGCCACCTTTAACAGAGTCATCCGAGTGCAAAAAGACTGTGCCATAAGTCATTTCCATACTATGATGACTTGGCCATCGTATTCGGAAAAGATAGAGCCACAGGGAGTCATGCAACCACCACTGCAGAGGTCGAATTTGAACCTGTTATGGAAGTGGAGAACGAGGACATCCTAAACAACCAGTCCCCAGACTTTGAGAACTTCTATATTCCTGATCCACCTTTTGCTAGGTCGCCCACGTCAGAGGACTTTCTAACTACCCCCAGTGGTAGAGGGTCTGGGAGTAGCTTGCCATCAAGGAGTAGGAGGTCCCGAAGTTCATCGATTAGAGAGTACAGTGAGGTGGTTCGTGAGGGATTCCAACTTCTGACGAAGTCTATTGACGGCATTGCACAGTGGCCTGTCATGAACGAGGACCTGGCAAGGTGTCGTCGTCGAAAACTATACGCCGAGCTGCAATTCATTCCTAGTCTGTCAATACAAGATGGATTGACTGTTGCACGGTCATTGCTTGCAGATCCAATGCTGTTAAGCCACTTTATGGACTTCCCACCACAATGGAAGTACGACTATTGCATGCAAGTCCTCGGGCGACCACGGGATCCAGCACCATGACTCTGCTTTTTCTCCCTTCAATTTGCAACCCTAGTTATTTTATGATTAAGGAACCTTATCTTTCCATGATGTTGTTTGTACTTTGAATTATGTGTACTTTTTTTTAACTTTAATTTTATATCGTTGTCCTTTTATTATATACTAACATTATTTTACTTTTAATTCTAATATACTGTGTTAGTTGAAATAGATGTAAAAAAAAAAAAAATCGAAATAATACTTCAAGAAAAAGTAGACAACATTATAATATAGCATGATAATTTGAAATAATATTTAAAAAGAAAAAAAAAATTAAAAATCAATCTTATAATATGGTAGTTTAATTTTTTATAGTATGAACAAATAAAATTCAAAATACATGATGGTTAAAAAAGATGTAGAAAAAAAAACAGTGGAAATAATATTTAAAAAAAAAAGTCAAAATACTATTTAAAAAGAAAAAAAATCATAATTATAATATAGTATGATAGTTTCATTTTCTATGGTATGAATAGATATAGTTCAAAATATATGATGCTTAAAACAAATCTAGAAAAAAAATTACTGAAAATAATATTAAAAAAATAAAAACAGTCAAAATAATATTTAAAAGCAAAAAAATCAAAATTATAATATACTATGATAGTTTAATTTTCTATAGTATGAACCGAAAAATTTCAACTTATATGATGCTTAAAACAGATGTAGAAAAAAAAACATCCATAATAATATTAAAAGAAAAAAAACAGCCAAACCCAACCCAAACCCAAGCCTGCAGTCCAAATACTGTAATCAGAAACCCAGCCAATCCAACCCTGCACTCCAAACACCATAATCAGATTCCAATGTATTCCAATTCCAGACAACAAAACCCATCGTAATCAGATTCCCAGTAATCCTAATTACAATCTGGCACCCCAAACACCCCCTTATTGTCTAGAATTTGATCACAGTATTTCTAGTGGAAATTTGGGTTTACTAGATTTCTGGTTATTGTGTTTAATTGCATGTTGGGTTGGATTTTTTTTTTTTTTTAAGGGTTAGTTGCACAAATAGCAAACGGGTCCAAAATAATAAAAAAAATATAACACAAGGAAAAATATATTAGGGATATAGCACAAAATTAGGGTCAGATATCACTAATAGCAGCTATTAGTGATAGTCATATTGGTAAATGACTAAAAATCCCATGTTTAGCCTGTCATTTCATGCTTCTTCTTCTGATTTTCTCAAATTGAAAGTTATCACTAATAGCAACTATTAGTGGTTATTACTGATAGCTGCTAGCAATGATAACTTTCAATGCTATCATTTATTATTAACACTTAAAGTCATCAATGGTTATCAATAGTAGACTCTTATAAGTAGTTATCAATTTTGAAAGGAAACTATCAACTTTCAAAGATTAACATTTAAAGCTATAAGTGATAGAAGTCTATTAATGAAAGGTTTATAAGTGACTATCATTGATATCTACCTAAATCATATTACTAATAACTTCTATTAATGACCATCACCGATAGCTTTTAGTAGTGGCTATCAATGATAGACTTTCATCCAATGAAATTGACTTTTATATCATTGATATCATCAATATATAGATATCACCTAATTTCTATCACTGATATCATTTATATCATGGTTATCGATGATAGCTTCTATCACTGATAACATGTTATCAAATATAACTTTTGTCATTCATTTTTACCATCAAATAACATGGTATCGTTGATAGCTTCTATCACTGATAACATGCTATTAGTGATAACTTCTAGGCATGTCATTTACACTTTAGTTCGGTATTCAACTTTATTAATTAATTCCACTAAGTTGGCTACCAATGATAGGCTTCTATAAGTGGCTAATAACTATGGAAGAAAATCATCAAAAATTAATCTATCAATAATAGAAAATATTAGTGGTTATTTCTGATAGACTTTCATTAGTAACTATCAATTTTGAAACATTAACACTCAAAGCTATCAATGCTGTTATTTAGAAACTTTTATTATGATTATCAATAATAGACTTCTATCACTATTATCTACCTAAGTTCAATATCACCGATATATAAATATGACTTATATCTATCTAAGTCCTATCACTAATATCACTGGTAAATGATATTACTGATATACAAATATTTAGTGAATTCTTTTCTAACATTTAAAAACATGAGTGATAGCCAGTGAGTTCTTCAATCAAAGATAAAATTCTTTGAGTGACTAAGTTATAAGTATATTAGTGGCTATCACCGATAGATTTATATTATTATGTCATAATAATGAATCACTTATAGCTACTAATAGATTCTATTAGTTTGACTTTTAGTTTATCTTGAGTATTTATTAATAATTTAGTTTACATTAGTTGATAAAAGTCCATAAGTCATAAACTTTTATCGTTGATTGATGACCTATAATAGATTTAGTTTATTAGTAATATCATAGCCTATCAATGATAGAAATTTATTACTCATAGATTTCATTTTTAAGGTCCTATAAAAAGAAAAAAAAACTATTGGCCCGTTTGATAACGTTCTCATTTCTCATCTTTTGAGAAATAAACTTGTTTAATAACTATTCTTGTTTCTTATTTCTAACTTTTAAGAGATGTGTTTCTAAAAATGGTGCAAAATTGAGGTCTAAAAAAATTAGTTTCTTTTGTCAATTTTTTTCTTTTGTCAATTTCTTTTTGCTATTTATATTTAACATTTCGTTATAATAATCAAACTTGATGATTGATTTGTTGGTGTTAAGTCACTTATGAATCATACACTTTCAAATCCAAAAAGAAAAAAGAAAATATGAGGAGATTGAGAATATGGAAACAAACACTTGAAAAAAAAATGAAAGAAAAAGAAAGGGAAGAAGAAAATATGAGGAGATTGGAAAGATGAAGAAAAATTGGAAAAAGAAAAGAAAAAAAAAAAGAAGAAAAAAATATGATGAGATTGGAGAGATAGAAGAAAAATTGGAAAAAGAAAAAAAAATATATGAGAAGATTGGGGAGAGGAAGAAATTTTGTGGAAAAAAATGGAAAAAAGAAAATAAAGGATGAAGAAAATAGGAGGAGATTGAAGAGATGGAAACAAAAGCTGGAAAAAGAAAATGAAAAAAAAAAAAAAGTTGTGCAAGACAAGGGCCAAAATTGGAAATCACAAAAGTTGACTAGTCAAATTTGCAAATATTTTAAAGATGTGATATTTTTAGATTTTCTCCCTTATTTTGAATTGCACAAAATGTCCAGAAACAAAAATACTTTTTTTATGGATGACCTCTTCCTAAAAACTTTATCATTAATGACTTTTTGGCTAAATGAAATACCTATTTTACCCCTAAAATTAAAACACCAACGGAACCATCTCTCCCTCGAAATGCTTTGCATTGAATGCTATGGACTTCTTCACCAAATCATACAAAATGATTCAATTCAACTAACATTCTACCAACAAAATTGAATATGGGGATTCTAATGAACGACCACTTTCTCATATTCTTCCATTGTTCCATTTTTGTCTGCGAGTTTCACAAACTGCCGAACTTCTTATTCCATTGTTCTCTATGGTTGCACGAACTTCTGAACCCATTCTTCCATTGTTCTCTGCGAGTTCCACGAACTCTCGGTTCTTCTTCGTCCAGTTCCAATGTCGGTCACTTTCATCTTCGTCCAGAAACTCAAAGAATGTAAGTGTTTTTATTACCAGATCGTTTAGTTTTATATAAACAATCACTTACATACAAGTACATAATCGATTAAATTCATATAAGCAATCATTTATAGCTAACTGATCGATCGCGTACGTGGTACTAAGCGATCGCGTATGTGATACTAAGCGATCGCTTACACCTTACTATGCGATCACATACAATTTTCCAGGCGATCACATACCTCTTACTAGGCGATTGCTCAATTTTTTTTCAACGATCATTTATAATTAAAAATCCTTAATTCTGTTGTTTGCAGATCAATGACTCTACTTCGCTGTACTATTTGGTGGGAAATGAGATCAGTCCGGATGTAATTGTGTCGGAGGTCACATGAAAGGTCTGAAGATCAAATAGGATATAACTTGTAATGAATTAGTGAGTATTATGCACCAACGACTAAACATCAATCCCTATCTACTTAATATACACATCAAGTGTTGTTACAATCTATTGGTTCAAGTTTCTTTAATTGACATAGTGGATGATGAAGACCTTAGCTTTTTTTAGAAGAAAGTGATGTATCTCGGATGTCATTGTTTGTATCAGTTACACCTCATGAAAGACATGGAGTAGATGATATGCACCAAGTGAAGCATTTCCAAGCATTCCAACTTATGATTTTCCCCACACGACTTCAATGGACAAGAATATTGAGGCATGCAATTTCAAATGAAAAATGGGTTGGTCAGAATATCCAATCTAAGTATAGTCCATAATATTATGCTGAAGATGTGTACGGACAATGTTCAAGACCACAAACAATCTCAACACCCTCCACTCATGTTCCGACATCGTCCATTCATGTTTCAACTAGGATAATTAATATAATATGATATTTTAAATCTCAAAACAACTTTTGAAAATTAGTTGATGTACAATATTTGAAAATTCAAAACAATTGTTAAATCTTATTTGAAAAATTCAAAACAATTATTAAATCTCAAGATTTATGGCAAATTATTTACTTGGAAAGATGCTCTTAGTTGACGTTGAAAGTGTATCGAGATGTTAATAGAACCAATGTTATAGTCTCATTAATAAAGATGCCGGATTAATTACATTGCAAAAGGGACGATGAGACCATTTTAGGACTTCTAAAAATTGGACTCATGTGACATTCATGTGTTTTGCTATAATTCAAAATAATTGATCCGCTTTTACAATTTTTCGAAATTACAGTATAATTACTGCCATATGAATGAATAGTTTTCACATGTTTTTATAATATAGATAAATAGTTTTTATGGTTTTGTGTGCCTAGAAAATAAATATCTTAGTATAAATTAAAATTTAAAAAAAAATTAATTAAAAAGACAATCAAATTATCCATATAAAATTTAAAAATATTTTTTTAACTAACACATGATTAACATGAAATTTTATACAGCATATAAAAATATTTTTAGTTTACACTAAAATTTAAAATTAAAAAGATAATCTTATAATCCAAATCCAAATTAAATTATTTTTTTTAACTACAAGAAGAAGAGAAGATTATGACGAAATAAAAAAATACGTTAGTTTAAACTAAAGTTTAAAATTGAGGGAATAATAAAATAGTCTAAATAAACCGTAAGATTTTTTTTTTTCCTAAACTAATAGAGAATTTATCAGTTTAAAATTGAGAGAATAATAAACTTATCCAAATCAAAATAAAAATAATAGTGGAATATTTTTGTTATCATATCATACCTATAATTTAAAATTTTCTCTTTTATCTTGATTAACGAAATAAGAATTAATGCAGTATTTTTTAATAAAAAAAATAACATAAGTAGAGAATCAAGTATATTGTTCCTCCGAGAATAAGATCAATTATAATCAAAATAAAAAAGCATTAACTTTTAATTATTAACTAATTAATAAAAAAACAATTTTAGTTCAAATTAATATTTAAAATTAAATAGGTAATTAAATCTATCTATATCGAAGTAAAAAATTATATTATTTTAGTTACTAGACTATCATAACAATTTTTTTAAAAAAGAAAAAAAAATATTTTAGTATGTTTAATCAAATCTTTCCCAAAATTTTAAAAATTAGATAACTAATTTAGCTTTTAAAAAATTTTAAATTTAAATTAAAGTTTGGATTCAATGGATAATTAGATGATGGAAAAGAAAGTTTATATATATATATATACAATTAATTAATTAATTTAAAACAATTTTAAACTATTAGATTGATTTAAGTTGAAGCTATGACTCATCAAATGATATAAAATTAAATCAAAATTTAAAATCAAATAGATAATCAAAATAAAAATTAATTTAAGAATATAATATATTTTAGCTATGAATGATTAATTTACAATAATAATTTATTAAATATTTACATTTAAACTAAAATTAAATTCGATTATTCTCTTCGATTCATTCTTATTTTGTAATTAAGCTGTTTTTTTTTTCTAAATACAATATTTATGGGATGAAGACCGAACCTCCCACCTTAGGATAGAAGGTCATGTCAATTACCACTAGTTAAACTTGCTTAGACAATAATTAAATTACATTTTAAACTTTACAAAATATATATAGATTAGTTTTTTACCCCGTGCAAATGGACATGCATTCCTTTACAAAAATTTAACTTTAAACAAACTGTGAAAATAAGTATAATTTTTTGTTGAAGTAGAAGTAAGTTATCTTTAA

mRNA sequence

ATGTTGGGCCCAGGCTGTAGTGGGTTTGGGTGGAATGCGGAGCGCAAATGTATTGATTGTGAGGCGGAGATATTTGACGCATGGGTCAAGAGTCATCCGAGTGCAAAAAGACTGTGCCATAAGTCATTTCCATACTATGATGACTTGGCCATCGTATTCGGAAAAGATAGAGCCACAGGGAGTCATGCAACCACCACTGCAGAGGTCGAATTTGAACCTGTTATGGAAGTGGAGAACGAGGACATCCTAAACAACCAGTCCCCAGACTTTGAGAACTTCTATATTCCTGATCCACCTTTTGCTAGTTATCTTTAA

Coding sequence (CDS)

ATGTTGGGCCCAGGCTGTAGTGGGTTTGGGTGGAATGCGGAGCGCAAATGTATTGATTGTGAGGCGGAGATATTTGACGCATGGGTCAAGAGTCATCCGAGTGCAAAAAGACTGTGCCATAAGTCATTTCCATACTATGATGACTTGGCCATCGTATTCGGAAAAGATAGAGCCACAGGGAGTCATGCAACCACCACTGCAGAGGTCGAATTTGAACCTGTTATGGAAGTGGAGAACGAGGACATCCTAAACAACCAGTCCCCAGACTTTGAGAACTTCTATATTCCTGATCCACCTTTTGCTAGTTATCTTTAA

Protein sequence

MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHATTTAEVEFEPVMEVENEDILNNQSPDFENFYIPDPPFASYL
Homology
[Close]
BLAST of CmUC11G213010 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 107.8 bits (268), Expect = 5.6e-20
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 0 

Query: 1   MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATG 60
           M GP CSGFGWN E +CI  E ++FD+W+KSHP+AK L HKSFPYYDDL+ VFGKDRATG
Sbjct: 84  MRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATG 143

Query: 61  SHATTTAEV 70
           + + T   V
Sbjct: 144 ARSETFPNV 152

[Close]
BLAST of CmUC11G213010 vs. NCBI nr
Match: KAA0062747.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 107.8 bits (268), Expect = 5.6e-20
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 0 

Query: 1   MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATG 60
           M GP CSGFGWN E +CI  E ++FD+WVKSHP+ K L HKSFPYYDDL+ VFGKDRATG
Sbjct: 366 MRGPSCSGFGWNEEFQCIIAERDLFDSWVKSHPATKGLLHKSFPYYDDLSYVFGKDRATG 425

Query: 61  SHATTTAEV 70
           + + T  +V
Sbjct: 426 ARSETFVDV 434

[Close]
BLAST of CmUC11G213010 vs. NCBI nr
Match: KAA0043158.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-19
Identity = 46/69 (66.67%), Postives = 53/69 (76.81%), Query Frame = 0 

Query: 1   MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATG 60
           M GP CSGFGWN E KCI  E E+FD WV+SHP+AK L +KSFPYYD+L  VFG+DRATG
Sbjct: 57  MRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKSFPYYDELTYVFGRDRATG 116

Query: 61  SHATTTAEV 70
             A T A+V
Sbjct: 117 RFAETFADV 125

[Close]
BLAST of CmUC11G213010 vs. NCBI nr
Match: TYK10886.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-19
Identity = 47/98 (47.96%), Postives = 65/98 (66.33%), Query Frame = 0 

Query: 1  MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATG 60
          M+GP CS FGWN E+KCI+ +  +FD WVK HP+A+ L +KSFPY+ DL I+FG+DRATG
Sbjct: 1  MMGPACSRFGWNEEQKCIEAQKSVFDDWVKGHPNARGLLNKSFPYFYDLKIMFGRDRATG 60

Query: 61 SHATTTAEVEFEPVMEVENEDILNNQSPDFENFYIPDP 99
              T  E+  +   + E +D+  N     E+F IP+P
Sbjct: 61 GRCKTPVEMGLQIARDTEEDDMDIN----LEDFDIPNP 94

[Close]
BLAST of CmUC11G213010 vs. NCBI nr
Match: TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-19
Identity = 47/98 (47.96%), Postives = 64/98 (65.31%), Query Frame = 0 

Query: 1   MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATG 60
           M+GP CSGFGWN  +KCI+ E  +FD WVK HP+A+ L +K FPY+ DL +VFG+DRATG
Sbjct: 192 MMGPACSGFGWNEGQKCIEVEKPVFDDWVKGHPNAQGLLNKPFPYFYDLEVVFGRDRATG 251

Query: 61  SHATTTAEVEFEPVMEVENEDILNNQSPDFENFYIPDP 99
               T  E+  +   + E +D+  N     E+F IP+P
Sbjct: 252 GRCKTPVEMSSQTARDTEEDDMDIN----LEDFDIPNP 285

[Close]
BLAST of CmUC11G213010 vs. ExPASy TrEMBL
Match: A0A5D3DG22 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00290 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.7e-20
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 0 

Query: 1   MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATG 60
           M GP CSGFGWN E +CI  E ++FD+WVKSHP+ K L HKSFPYYDDL+ VFGKDRATG
Sbjct: 366 MRGPSCSGFGWNEEFQCIIAERDLFDSWVKSHPATKGLLHKSFPYYDDLSYVFGKDRATG 425

Query: 61  SHATTTAEV 70
           + + T  +V
Sbjct: 426 ARSETFVDV 434

[Close]
BLAST of CmUC11G213010 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.7e-20
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 0 

Query: 1   MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATG 60
           M GP CSGFGWN E +CI  E ++FD+W+KSHP+AK L HKSFPYYDDL+ VFGKDRATG
Sbjct: 84  MRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATG 143

Query: 61  SHATTTAEV 70
           + + T   V
Sbjct: 144 ARSETFPNV 152

[Close]
BLAST of CmUC11G213010 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.7e-20
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 0 

Query: 1   MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATG 60
           M GP CSGFGWN E +CI  E ++FD+W+KSHP+AK L HKSFPYYDDL+ VFGKDRATG
Sbjct: 84  MRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATG 143

Query: 61  SHATTTAEV 70
           + + T   V
Sbjct: 144 ARSETFPNV 152

[Close]
BLAST of CmUC11G213010 vs. ExPASy TrEMBL
Match: A0A5D3CKC1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00580 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 7.8e-20
Identity = 47/98 (47.96%), Postives = 65/98 (66.33%), Query Frame = 0 

Query: 1  MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATG 60
          M+GP CS FGWN E+KCI+ +  +FD WVK HP+A+ L +KSFPY+ DL I+FG+DRATG
Sbjct: 1  MMGPACSRFGWNEEQKCIEAQKSVFDDWVKGHPNARGLLNKSFPYFYDLKIMFGRDRATG 60

Query: 61 SHATTTAEVEFEPVMEVENEDILNNQSPDFENFYIPDP 99
              T  E+  +   + E +D+  N     E+F IP+P
Sbjct: 61 GRCKTPVEMGLQIARDTEEDDMDIN----LEDFDIPNP 94

[Close]
BLAST of CmUC11G213010 vs. ExPASy TrEMBL
Match: A0A5A7V6Q9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold99G00200 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 7.8e-20
Identity = 46/69 (66.67%), Postives = 53/69 (76.81%), Query Frame = 0 

Query: 1   MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATG 60
           M GP CSGFGWN E KCI  E E+FD WV+SHP+AK L +KSFPYYD+L  VFG+DRATG
Sbjct: 84  MRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKSFPYYDELTYVFGRDRATG 143

Query: 61  SHATTTAEV 70
             A T A+V
Sbjct: 144 RFAETFADV 152

[Close]
BLAST of CmUC11G213010 vs. TAIR 10
Match: AT5G27260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 54.7 bits (130), Expect = 5.2e-08
Identity = 27/88 (30.68%), Postives = 48/88 (54.55%), Query Frame = 0 

Query: 7   SGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHATTT 66
           SGFGW+   K      E++  ++K+HP+ K+L + +F ++D+L I+FG+  ATG +A   
Sbjct: 92  SGFGWDPLTKRFTASDEVWSDYLKAHPNNKQLRYDTFEFFDELQIIFGEGVATGKNAIGL 151

Query: 67  AEVEFEPVMEVENEDILNNQSPDFENFY 95
            +   + +     E+       DF+N Y
Sbjct: 152 CD-STDGLTYRAGENPRKEYVDDFDNVY 178

[Close]
BLAST of CmUC11G213010 vs. TAIR 10
Match: AT1G30140.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 313 Blast hits to 256 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 295; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 53.5 bits (127), Expect = 1.2e-07
Identity = 23/57 (40.35%), Postives = 36/57 (63.16%), Query Frame = 0 

Query: 7   SGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHA 64
           SGFGW+ E K      E++  ++K+HP+ K +  +S  +++DL I+FG   ATGS A
Sbjct: 88  SGFGWDPETKKFTAPDEVWRDYLKAHPNHKHMQTESIDHFEDLQIIFGDVVATGSFA 144

[Close]
BLAST of CmUC11G213010 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 50.1 bits (118), Expect = 1.3e-06
Identity = 22/87 (25.29%), Postives = 44/87 (50.57%), Query Frame = 0 

Query: 7   SGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHATTT 66
           +GF W+A R  +  + +I++ ++++HP A+    K+ P Y +L  +FGK+ + G +    
Sbjct: 399 NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPSYPNLCFIFGKETSDGRYTRLA 458

Query: 67  AEVEFEPVMEVENEDILNNQSPDFENF 94
              +  P      E +  N+S   + F
Sbjct: 459 QAFDPSPA-----ETVRMNESGSTDGF 480

[Close]
BLAST of CmUC11G213010 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 1.4e-05
Identity = 22/69 (31.88%), Postives = 34/69 (49.28%), Query Frame = 0 

Query: 8   GFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVF------GKDRATGS 67
           GF W+  R  I  +  ++D+++K HP A+    KS P Y+DL  +F      G D     
Sbjct: 245 GFSWDETRLMISADDAVWDSYIKDHPLARTYRMKSLPSYNDLDTIFACQAEQGTDHRDDG 304

Query: 68  HATTTAEVE 71
            A  T+E +
Sbjct: 305 SAAQTSETK 313

[Close]
BLAST of CmUC11G213010 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 7.0e-05
Identity = 19/71 (26.76%), Postives = 36/71 (50.70%), Query Frame = 0 

Query: 8   GFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHATTTA 67
           GF W+ ER+ +  +  ++  ++K+H  A++   +  PYY DL ++ G D     +    A
Sbjct: 259 GFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIPYYKDLCVLCG-DSGIEENECFVA 318

Query: 68  EVEFEPVMEVE 79
              F+P  E +
Sbjct: 319 MDWFDPETEFQ 328

The following BLAST results are available for this feature:
BLAST of CmUC11G213010 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008441954.15.6e-2065.22PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret... [more]
KAA0062747.15.6e-2065.22retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon p... [more]
KAA0043158.11.6e-1966.67retrotransposon protein [Cucumis melo var. makuwa][more]
TYK10886.11.6e-1947.96retrotransposon protein [Cucumis melo var. makuwa][more]
TYK07921.11.6e-1947.96hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa][more]
BLAST of CmUC11G213010 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC11G213010 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DG222.7e-2065.22Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U0H72.7e-2065.22Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B4L32.7e-2065.22uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
A0A5D3CKC17.8e-2047.96Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V6Q97.8e-2066.67Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of CmUC11G213010 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G27260.15.2e-0830.68unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G30140.11.2e-0740.35unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G24960.21.3e-0625.29unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G24960.11.4e-0531.88unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G02210.17.0e-0526.76unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 1..70
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 1..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC11G213010.1CmUC11G213010.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane