CmUC11G211560 (gene) Watermelon (USVL531) v1

Overview
NameCmUC11G211560
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionPhotosystem I P700 chlorophyll a apoprotein A1
LocationCmU531Chr11: 7822688 .. 7826672 (-)
RNA-Seq ExpressionCmUC11G211560
SyntenyCmUC11G211560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCACTATTTGCTATAGTTGAATTATATATACACATGTACTGTTAAGAAGGGAGCATGAAATTCATTTTATTCCCCTTGCCAAATTTTGTGGAAGAAATAATTTGCTCCGAAAAAAGGCGGATGCTCCTGTAGGTAGGAGCAACTTCACTTTCGGTGTTCGGCGCTCCCTTCGAACTGATATCCAAAGATTCCCTGGAATAACTAGTGAATTACAACTCTATTGTACCGCAATTGGTGCATTAGTCATTGCAGCCTTAATGCTTTTTGCTGGTTGGTTTCATTATCACAAGGCTGCTCCTAAATTGGCTTGGTTCCAAGATGTCGAATCCATGTTGAATCACCATTTAGCGGGTCTGTTAGGGGAACTTCTCACTTATTGAGACTCTATAAGAGATATTACGGAGGGATATGCTACTTGGGTATCCGGGTAATCCGTGGAAGAAGTAGAAGCAAGCTAGTTACTCTTATGCCCACCCCACGTTAAAAGAAGAGTTGCAGCTTTAGGAGCTCTAGGGAAATCGGAATAGGAGAGCACTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGCGGAATTGCATTTCGGAGCTGAGCCAGGAATGGCCGTTAGTGGACACCCACCACTTTTCACCGGTTAGAGAGGCCCTCTTTAATACATTAAGAAAAGATGTTCACAGAGGCCAGAAAGACTCGGTCATAGGAACTTAGACCACCTACGCGCTGGTAAACGAAAACCACCTCGACCGGATCAGAGTCAACAAGAATGTCGATCAGGGCCCTTGCCTTGAAAGAATTCACACGCGGCCACCTGCTTTCCCAAAATAAGGGGAGATCCGCTGCTTACTGTTCACGGAAACATCCGACCTATACGAGAGTCAAGTCGTCCACGTATCTTTCTGATCTCCTTTCCTTCTATTTATCTGATTTTTGGCTTTGACTCATTCAAGGTGAAAAATGAATGGGGTTGATGGTGTTGGCTAAAAAAGGGGGAGAGAGGAGTGGGGTACGCTCACTTCTGCATTTTTTTTTAGGTTATCGAGATTCTCGTTCCACTCGAAAGATTCTTGTTATTGCTTCAACCCATATTCCCCAAAAAGTGGATCCCGCTCTAATAGCTCCGAATAAATTAAATACATGCATTCAAATCCCAAGCTTTTTCTACATCCACAACAACGAAAGCACTTTTTTCTTCTGCAGTTCTCGACGGAGATTAGGATGAGCTTTGATGAATAAAAGAAGAATCTATAGAAATGAAACGGCGACTACCCGAGCTAATGATAGAGGCAAGAACACTTTCCGGCCAGGCCTTACTATAACCAACCTCACAGATCCCACTCAATCTTTTACACCGATGTATCATACCCCTCAACCAACTAAGACATTTCTTCAGAAATTCCTCTCACCCCCCTATCACAACAAGGCAGAGCTAACCCAACATTCTACTGCTCTCTAAAAGGCCAGCCCATTCGACGAAGCAATCTTGGACCCTCTTGGCTGCGCTGTGCTTGGATGCACTTGTATTCCACACGCCAGCGCTCTAACCGAGATTTTTGGAGATGATTCTGTACTACAATTCGGTGGAGGAACTTTGGGGCACCCTTGGGGTAATGCACCTGGTGCCGTAGCTAACCGAGTAGCTCTAGAAGCATGTGTACAAGCTCGTAATGAGGGACGTGATCTTGCTCTGAGGGTAATGAAATTATCCGTGAGGCTAGTAAATGGAGTCCTGAACTAGCTGCTGCTTGTGAAGTATGGAAGGAGATCAAATTTGAATTTGAGGCAATGGATACTTTGTAATCCAGTAATTACTCTTCGTTCTTTTAATTGATTTTCAATTAAACTAAACTCGGCCCAATCTTTTACTAAAAGGATTGAGCCGAATACAATACAAAGATATTATTGTATATCTTTTTGCTAGATATACAAAATTGAAATCAAAATCTAAGACGAAACAACTTAAACATTTTTATTGTTGTGCTAGATCCGCAATTAAGCCTATGGATCCTTAGGATTGGTGTAGTCGTTTAATATATTATATCCCGTAGCGTCGTTTCAGATCCGGGATCGAGCCAAGTATCACAACTTCTTCTACCCATCCTGTATATTGTCCTTTTTGTTCTGGCTTGGAATACAAATTTTTTAGTAGACGAGATTTTACGAAAAAAGTTCTTCATATTCATAGGCAGAACAACGATTTTTTTTTATGTGAATTTGACATAACAGGTGAGAAACCCCTATTTATAAATTAATAATTTAATTGAAAAAAAAATTCTCTTTTGCGAGAACGTTAAGTATCACTTCACTATATATAACGGACCTTTTTTTTTTAAGACCTAGTAGTTAATAATCCTAGTGATTGGATTTAGATCCTATTCTGATAGGAAATGAGATATTCAAATGATTTATTTTTTATCGTTATCGAATGACTATTTATCTATTGTATTTTCATGTAAATAGGGGCAAGAAAGCTCTATGGAAAAAAGATGGTTAAATTCGATGTTGTCTAACGGCGAGGTAGAATACAGGTGTAGGCTAAGTAAATCAATCAATAGTCTTGGTCCTATTGAAAGTGAAGGATCAATTATAAATAATATGAATAAAAACATTCCTAGTCATAGTGATAGTTACAATTCTAGTTACAGTACTGTTGATGATTTAGTCGGCATTCGGAATTTCGTATCTGATGACACTTTTTTAGTTAGGGATAGTAATAGCAGCAGTTATTCCACATGATCGAGCCGACATTTTCGAGTTGGGATCCGTCTCTCCTTATCACGCCAGCCGGAGAAAAGGGAGAAACGGATGGTAGAGACATGATTGGAATCCGGGAGACGAGATTGAGCCCCCACCTCAAGCCTCCGTAATATCTAACAAGTCGAGTCTTATGTCGGTCATATAAAACACCAACACATAGAAAAAGGGCTGAAGGAACCAGTCCATGACTTAACATCGGTAGAATGCTACCTCCAATTCCCTGTATGTTCGATAGAGCCTGGCGGATGTAGCCAAGTGGATCAAGGCAGTGGATTGTGAATCCACCATGCGCGGGTTCAATTCCCGTCGTTCGCCCATAATATATAGTTATAGAATATATAACTGATAAGAGAAATACAGTGAATTTACCTCCTATTTTTTTTGTTTGTAAAGACGAGACAGGCAAAACTAAAGGGGGAAATATCTTAACAGGTGACTATGAGATGAACCGATCTCATAAAGGTATGTCTAGATTTGGTTGAAAGGTATGTCCCCTGGGCTCTTAAGATTCCTTATGAATCTTGGACTGGACTTCGGTGGCTACCGAAATGGTCATCGTCACTTGTTAAGGATTCGGCATTCGGCGTATCGGGAGCTAAGAAAACTCCTCACGTCTCGAATGAATTCAAGGACATATTCGAAGAAATTCTGACCGTCAATAGGAATGGTTTGTGGATTACGAACTGGTATAATGGCTGAACCTAATAAGATAGCAATTACAACCCAAGAAGTAATAAGTACTTGGGCATGTACTTGGAAACCTCGGAGCCCAATGCAAAAAAATGCATGTTGGGTCTTTGAAACAGTTCAAATCATTTTGATAATAATAAGTTTGATCTGTTTTACCGAGAAGGTCTACGGTTCGAGTCCGTATAGCCCTATATTATTAAAAATTCAAAAATAGTGCCAAGCAAGACCGCCCTTGTCCCTTTCCTTTCTCCATTCCACCTCCTTCTTTCTTAGCTTTGTTCCAATCGAGTCTAAGGCAAAGCAAAAGTGGTTCGTATACCTATTTTTTGACCTACTTGACGAAAGGGAACGCACTTTGTTTCGTTTCCCAGTTCAAATCCGGGTGTCGCCTCATCAACAAACAAAAGAATCGAAATACCTTCTTCTGTTTTGCTGA

mRNA sequence

ATGCCACTATTTGCTATAGTTGAATTATATATACACATGAGCAACTTCACTTTCGGTGTTCGGCGCTCCCTTCGAACTGATATCCAAAGATTCCCTGGAATAACTAGTGAATTACAACTCTATTGTACCGCAATTGGTGCATTAGTCATTGCAGCCTTAATGCTTTTTGCTGGTTGGTTTCATTATCACAAGGCTGCTCCTAAATTGGCTTGGTTCCAAGATGTCGAATCCATGTTGAATCACCATTTAGCGGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGATAACTGGTACACCAGAGGTTATCGAGATTCTCGTTCCACTCGAAAGATTCTTGTTATTGCTTCAACCCATATTCCCCAAAAAGCCAGCCCATTCGACGAAGCAATCTTGGACCCTCTTGGCTGCGCTGTGCTTGGATGCACTTGTATTCCACACGCCAGCGCTCTAACCGAGATTTTTGGAGATGATTCTGTACTACAATTCGGTGGAGGAACTTTGGGGCACCCTTGGGGTAATGCACCTGGTGCCGTAGCTAACCGAGTAGCTCTAGAAGCATGTGTACAAGCTCGTAATGAGGGACGTGATCTTGCTCTGAGGTATGGAAGGAGATCAAATTTGAATTTGAGGCAATGGATACTTTGTAATCCACGTCGTTTCAGATCCGGGATCGAGCCAAGTATCACAACTTCTTCTACCCATCCTGGGCAAGAAAGCTCTATGGAAAAAAGATGGTTAAATTCGATGTTGTCTAACGGCGAGGTAGAATACAGCTTTGTTCCAATCGAGTCTAAGGCAAAGCAAAAGTGGTTCGTATACCTATTTTTTGACCTACTTGACGAAAGGGAACGCACTTTGTTTCGTTTCCCAGTTCAAATCCGGGTGTCGCCTCATCAACAAACAAAAGAATCGAAATACCTTCTTCTGTTTTGCTGA

Coding sequence (CDS)

ATGCCACTATTTGCTATAGTTGAATTATATATACACATGAGCAACTTCACTTTCGGTGTTCGGCGCTCCCTTCGAACTGATATCCAAAGATTCCCTGGAATAACTAGTGAATTACAACTCTATTGTACCGCAATTGGTGCATTAGTCATTGCAGCCTTAATGCTTTTTGCTGGTTGGTTTCATTATCACAAGGCTGCTCCTAAATTGGCTTGGTTCCAAGATGTCGAATCCATGTTGAATCACCATTTAGCGGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGATAACTGGTACACCAGAGGTTATCGAGATTCTCGTTCCACTCGAAAGATTCTTGTTATTGCTTCAACCCATATTCCCCAAAAAGCCAGCCCATTCGACGAAGCAATCTTGGACCCTCTTGGCTGCGCTGTGCTTGGATGCACTTGTATTCCACACGCCAGCGCTCTAACCGAGATTTTTGGAGATGATTCTGTACTACAATTCGGTGGAGGAACTTTGGGGCACCCTTGGGGTAATGCACCTGGTGCCGTAGCTAACCGAGTAGCTCTAGAAGCATGTGTACAAGCTCGTAATGAGGGACGTGATCTTGCTCTGAGGTATGGAAGGAGATCAAATTTGAATTTGAGGCAATGGATACTTTGTAATCCACGTCGTTTCAGATCCGGGATCGAGCCAAGTATCACAACTTCTTCTACCCATCCTGGGCAAGAAAGCTCTATGGAAAAAAGATGGTTAAATTCGATGTTGTCTAACGGCGAGGTAGAATACAGCTTTGTTCCAATCGAGTCTAAGGCAAAGCAAAAGTGGTTCGTATACCTATTTTTTGACCTACTTGACGAAAGGGAACGCACTTTGTTTCGTTTCCCAGTTCAAATCCGGGTGTCGCCTCATCAACAAACAAAAGAATCGAAATACCTTCTTCTGTTTTGCTGA

Protein sequence

MPLFAIVELYIHMSNFTFGVRRSLRTDIQRFPGITSELQLYCTAIGALVIAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLADAFSSYPLRTWLPSVYRGHDNWYTRGYRDSRSTRKILVIASTHIPQKASPFDEAILDPLGCAVLGCTCIPHASALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLALRYGRRSNLNLRQWILCNPRRFRSGIEPSITTSSTHPGQESSMEKRWLNSMLSNGEVEYSFVPIESKAKQKWFVYLFFDLLDERERTLFRFPVQIRVSPHQQTKESKYLLLFC
Homology
[Close]
BLAST of CmUC11G211560 vs. NCBI nr
Match: KAG8499239.1 (hypothetical protein CXB51_005773 [Gossypium anomalum])

HSP 1 Score: 121.3 bits (303), Expect = 1.5e-23
Identity = 70/104 (67.31%), Postives = 71/104 (68.27%), Query Frame = 0 

Query: 155 HASALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLALRYGRRS 214
           H  ALTEIFGDDSVLQFGGGTLGH WGNAPGAVANRVALEACVQARNEGRDLA R G   
Sbjct: 355 HMPALTEIFGDDSVLQFGGGTLGHAWGNAPGAVANRVALEACVQARNEGRDLA-REGNEI 414

Query: 215 NLNLRQW------------ILCNP--RRFRSGIEPSITTSSTHP 245
                +W            IL  P    F S IEPSITTSSTHP
Sbjct: 415 IREASKWSPELAAACEDWCILFYPIYHGFGSWIEPSITTSSTHP 457

[Close]
BLAST of CmUC11G211560 vs. NCBI nr
Match: RYR79961.1 (hypothetical protein Ahy_A01g004755 [Arachis hypogaea])

HSP 1 Score: 118.6 bits (296), Expect = 9.7e-23
Identity = 61/92 (66.30%), Postives = 63/92 (68.48%), Query Frame = 0 

Query: 155 HASALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDL-------- 214
           H  ALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDL        
Sbjct: 393 HMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNEII 452

Query: 215 ------------ALRYGRRSNLNLRQWILCNP 227
                       A    +  NLN +QWILCNP
Sbjct: 453 REASKWSPELAAACEVWKAINLNSQQWILCNP 484

[Close]
BLAST of CmUC11G211560 vs. NCBI nr
Match: QHO47946.1 (Ribulose bisphosphate carboxylase large chain [Arachis hypogaea])

HSP 1 Score: 118.6 bits (296), Expect = 9.7e-23
Identity = 61/92 (66.30%), Postives = 63/92 (68.48%), Query Frame = 0 

Query: 155 HASALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDL-------- 214
           H  ALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDL        
Sbjct: 393 HMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNEII 452

Query: 215 ------------ALRYGRRSNLNLRQWILCNP 227
                       A    +  NLN +QWILCNP
Sbjct: 453 REASKWSPELAAACEVWKAINLNSQQWILCNP 484

[Close]
BLAST of CmUC11G211560 vs. NCBI nr
Match: THG10007.1 (hypothetical protein TEA_024123 [Camellia sinensis var. sinensis])

HSP 1 Score: 117.5 bits (293), Expect = 2.2e-22
Identity = 69/117 (58.97%), Postives = 77/117 (65.81%), Query Frame = 0 

Query: 155 HASALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLALRYGRRS 214
           H  ALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLA R G   
Sbjct: 361 HMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLA-REGNEI 420

Query: 215 NLNLRQW-----ILCNPRRFRSGIEPSITTSSTHPGQESSMEKRWLNSMLSNGEVEY 267
                +W       C   +      P++ T     GQE+ MEK   NS+LS  E+E+
Sbjct: 421 IREASKWSPELAAACEVWKEIKFEFPAMDTL----GQENYMEKWRFNSILSKKELEH 472

[Close]
BLAST of CmUC11G211560 vs. NCBI nr
Match: YP_004927583.1 (orf170 [Brassica carinata] >YP_009320224.1 orf170 [Sinapis arvensis] >AGC81687.1 hypothetical protein DCGMS_00270 [Raphanus sativus] >AEH43598.1 orf170 [Brassica carinata] >AIE42567.1 hypothetical protein RadishMT_p036 [Raphanus sativus] >AJR33075.1 orf170 [Sinapis arvensis] >QGW48423.1 hypothetical protein [Raphanus sativus])

HSP 1 Score: 115.9 bits (289), Expect = 6.3e-22
Identity = 58/74 (78.38%), Postives = 60/74 (81.08%), Query Frame = 0 

Query: 28  IQRFPGITSELQLYCTAIGALVIAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLADAF 87
           I R  GITSELQLYCTAIGALV AALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLA   
Sbjct: 90  IWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLA--- 149

Query: 88  SSYPLRTWLPSVYR 102
                RTW+P + R
Sbjct: 150 ---ATRTWVPFLGR 157

[Close]
BLAST of CmUC11G211560 vs. ExPASy Swiss-Prot
Match: Q3V534 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Acorus calamus OX=4465 GN=psaA PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.0e-23
Identity = 53/57 (92.98%), Postives = 53/57 (92.98%), Query Frame = 0 

Query: 28  IQRFPGITSELQLYCTAIGALVIAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLA 85
           I R  GITSELQLYCTAIGALV AALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLA
Sbjct: 144 IWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLA 200

[Close]
BLAST of CmUC11G211560 vs. ExPASy Swiss-Prot
Match: A4QJB5 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Aethionema cordifolium OX=434059 GN=psaA PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.0e-23
Identity = 53/57 (92.98%), Postives = 53/57 (92.98%), Query Frame = 0 

Query: 28  IQRFPGITSELQLYCTAIGALVIAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLA 85
           I R  GITSELQLYCTAIGALV AALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLA
Sbjct: 144 IWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLA 200

[Close]
BLAST of CmUC11G211560 vs. ExPASy Swiss-Prot
Match: A4QJJ9 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Aethionema grandiflorum OX=72657 GN=psaA PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.0e-23
Identity = 53/57 (92.98%), Postives = 53/57 (92.98%), Query Frame = 0 

Query: 28  IQRFPGITSELQLYCTAIGALVIAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLA 85
           I R  GITSELQLYCTAIGALV AALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLA
Sbjct: 144 IWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLA 200

[Close]
BLAST of CmUC11G211560 vs. ExPASy Swiss-Prot
Match: Q70Y03 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Amborella trichopoda OX=13333 GN=psaA PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.0e-23
Identity = 53/57 (92.98%), Postives = 53/57 (92.98%), Query Frame = 0 

Query: 28  IQRFPGITSELQLYCTAIGALVIAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLA 85
           I R  GITSELQLYCTAIGALV AALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLA
Sbjct: 144 IWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLA 200

[Close]
BLAST of CmUC11G211560 vs. ExPASy Swiss-Prot
Match: A4QK18 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Arabis hirsuta OX=78191 GN=psaA PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.0e-23
Identity = 53/57 (92.98%), Postives = 53/57 (92.98%), Query Frame = 0 

Query: 28  IQRFPGITSELQLYCTAIGALVIAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLA 85
           I R  GITSELQLYCTAIGALV AALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLA
Sbjct: 144 IWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLA 200

[Close]
BLAST of CmUC11G211560 vs. ExPASy TrEMBL
Match: A0A445EX07 (Ribulose bisphosphate carboxylase large chain OS=Arachis hypogaea OX=3818 GN=Ahy_A01g004755 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.7e-23
Identity = 61/92 (66.30%), Postives = 63/92 (68.48%), Query Frame = 0 

Query: 155 HASALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDL-------- 214
           H  ALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDL        
Sbjct: 393 HMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNEII 452

Query: 215 ------------ALRYGRRSNLNLRQWILCNP 227
                       A    +  NLN +QWILCNP
Sbjct: 453 REASKWSPELAAACEVWKAINLNSQQWILCNP 484

[Close]
BLAST of CmUC11G211560 vs. ExPASy TrEMBL
Match: A0A4V3WMU6 (Photosystem I assembly protein Ycf4 OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_024123 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.0e-22
Identity = 69/117 (58.97%), Postives = 77/117 (65.81%), Query Frame = 0 

Query: 155 HASALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLALRYGRRS 214
           H  ALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLA R G   
Sbjct: 361 HMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLA-REGNEI 420

Query: 215 NLNLRQW-----ILCNPRRFRSGIEPSITTSSTHPGQESSMEKRWLNSMLSNGEVEY 267
                +W       C   +      P++ T     GQE+ MEK   NS+LS  E+E+
Sbjct: 421 IREASKWSPELAAACEVWKEIKFEFPAMDTL----GQENYMEKWRFNSILSKKELEH 472

[Close]
BLAST of CmUC11G211560 vs. ExPASy TrEMBL
Match: R9QTB6 (Uncharacterized protein OS=Raphanus sativus OX=3726 GN=orf170a PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-22
Identity = 58/74 (78.38%), Postives = 60/74 (81.08%), Query Frame = 0 

Query: 28  IQRFPGITSELQLYCTAIGALVIAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLADAF 87
           I R  GITSELQLYCTAIGALV AALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLA   
Sbjct: 90  IWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLA--- 149

Query: 88  SSYPLRTWLPSVYR 102
                RTW+P + R
Sbjct: 150 ---ATRTWVPFLGR 157

[Close]
BLAST of CmUC11G211560 vs. ExPASy TrEMBL
Match: A0A1D6WKI3 (Orf170 OS=Sinapis arvensis OX=29728 GN=orf170 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-22
Identity = 58/74 (78.38%), Postives = 60/74 (81.08%), Query Frame = 0 

Query: 28  IQRFPGITSELQLYCTAIGALVIAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLADAF 87
           I R  GITSELQLYCTAIGALV AALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLA   
Sbjct: 90  IWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLA--- 149

Query: 88  SSYPLRTWLPSVYR 102
                RTW+P + R
Sbjct: 150 ---ATRTWVPFLGR 157

[Close]
BLAST of CmUC11G211560 vs. ExPASy TrEMBL
Match: G4XYP4 (Orf170 OS=Brassica carinata OX=52824 GN=orf170 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-22
Identity = 58/74 (78.38%), Postives = 60/74 (81.08%), Query Frame = 0 

Query: 28  IQRFPGITSELQLYCTAIGALVIAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLADAF 87
           I R  GITSELQLYCTAIGALV AALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLA   
Sbjct: 90  IWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLA--- 149

Query: 88  SSYPLRTWLPSVYR 102
                RTW+P + R
Sbjct: 150 ---ATRTWVPFLGR 157

[Close]
BLAST of CmUC11G211560 vs. TAIR 10
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-24
Identity = 53/57 (92.98%), Postives = 53/57 (92.98%), Query Frame = 0 

Query: 28  IQRFPGITSELQLYCTAIGALVIAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLA 85
           I R  GITSELQLYCTAIGALV AALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLA
Sbjct: 144 IWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLA 200

[Close]
BLAST of CmUC11G211560 vs. TAIR 10
Match: ATCG00490.1 (ribulose-bisphosphate carboxylases )

HSP 1 Score: 109.8 bits (273), Expect = 4.2e-24
Identity = 51/54 (94.44%), Postives = 52/54 (96.30%), Query Frame = 0 

Query: 155 HASALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAL 209
           H  ALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLA+
Sbjct: 386 HMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAV 439

[Close]
BLAST of CmUC11G211560 vs. TAIR 10
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 49.3 bits (116), Expect = 6.7e-06
Identity = 23/56 (41.07%), Postives = 34/56 (60.71%), Query Frame = 0 

Query: 33  GITSELQLYCTAIGALVIAALMLFAGWFHYH-KAAPKLAWFQDVESMLNHHLADAF 88
           G+ +   LY  A+  L ++AL L  GW H   K  P+++WF++ ES LNHHL+  F
Sbjct: 128 GLRTNEDLYTGALFLLFLSALSLIGGWLHLQPKWKPRVSWFKNAESRLNHHLSGLF 183

The following BLAST results are available for this feature:
BLAST of CmUC11G211560 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG8499239.11.5e-2367.31hypothetical protein CXB51_005773 [Gossypium anomalum][more]
RYR79961.19.7e-2366.30hypothetical protein Ahy_A01g004755 [Arachis hypogaea][more]
QHO47946.19.7e-2366.30Ribulose bisphosphate carboxylase large chain [Arachis hypogaea][more]
THG10007.12.2e-2258.97hypothetical protein TEA_024123 [Camellia sinensis var. sinensis][more]
YP_004927583.16.3e-2278.38orf170 [Brassica carinata] >YP_009320224.1 orf170 [Sinapis arvensis] >AGC81687.1... [more]
BLAST of CmUC11G211560 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q3V5342.0e-2392.98Photosystem I P700 chlorophyll a apoprotein A1 OS=Acorus calamus OX=4465 GN=psaA... [more]
A4QJB52.0e-2392.98Photosystem I P700 chlorophyll a apoprotein A1 OS=Aethionema cordifolium OX=4340... [more]
A4QJJ92.0e-2392.98Photosystem I P700 chlorophyll a apoprotein A1 OS=Aethionema grandiflorum OX=726... [more]
Q70Y032.0e-2392.98Photosystem I P700 chlorophyll a apoprotein A1 OS=Amborella trichopoda OX=13333 ... [more]
A4QK182.0e-2392.98Photosystem I P700 chlorophyll a apoprotein A1 OS=Arabis hirsuta OX=78191 GN=psa... [more]
BLAST of CmUC11G211560 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A445EX074.7e-2366.30Ribulose bisphosphate carboxylase large chain OS=Arachis hypogaea OX=3818 GN=Ahy... [more]
A0A4V3WMU61.0e-2258.97Photosystem I assembly protein Ycf4 OS=Camellia sinensis var. sinensis OX=542762... [more]
R9QTB63.0e-2278.38Uncharacterized protein OS=Raphanus sativus OX=3726 GN=orf170a PE=4 SV=1[more]
A0A1D6WKI33.0e-2278.38Orf170 OS=Sinapis arvensis OX=29728 GN=orf170 PE=4 SV=1[more]
G4XYP43.0e-2278.38Orf170 OS=Brassica carinata OX=52824 GN=orf170 PE=4 SV=1[more]
BLAST of CmUC11G211560 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00350.11.4e-2492.98Photosystem I, PsaA/PsaB protein [more]
ATCG00490.14.2e-2494.44ribulose-bisphosphate carboxylases [more]
ATCG00340.16.7e-0641.07Photosystem I, PsaA/PsaB protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001280Photosystem I PsaA/PsaBPRINTSPR00257PHOTSYSPSAABcoord: 40..64
score: 62.63
coord: 79..103
score: 29.56
IPR001280Photosystem I PsaA/PsaBPFAMPF00223PsaA_PsaBcoord: 30..87
e-value: 2.0E-21
score: 76.0
IPR036376Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamilyGENE3D3.20.20.110coord: 136..221
e-value: 3.2E-17
score: 64.3
IPR036376Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamilySUPERFAMILY51649RuBisCo, C-terminal domaincoord: 154..207
IPR000685Ribulose bisphosphate carboxylase, large subunit, C-terminalPFAMPF00016RuBisCO_largecoord: 155..206
e-value: 2.4E-12
score: 46.7
IPR036408Photosystem I PsaA/PsaB superfamilyGENE3D1.20.1130.10Photosystem I PsaA/PsaBcoord: 12..94
e-value: 3.7E-20
score: 73.2
IPR036408Photosystem I PsaA/PsaB superfamilySUPERFAMILY81558Photosystem I subunits PsaA/PsaBcoord: 29..87
NoneNo IPR availablePANTHERPTHR30128OUTER MEMBRANE PROTEIN, OMPA-RELATEDcoord: 27..85
IPR006243Photosystem I PsaAPANTHERPTHR30128:SF60PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1coord: 27..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC11G211560.1CmUC11G211560.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009853 photorespiration
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0019253 reductive pentose-phosphate cycle
biological_process GO:0015979 photosynthesis
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009522 photosystem I
cellular_component GO:0009579 thylakoid
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0016984 ribulose-bisphosphate carboxylase activity
molecular_function GO:0046872 metal ion binding