CmUC11G211530 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC11G211530
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Ribulose bisphosphate carboxylase large chain
Location	CmU531Chr11: 7810687 .. 7811112 (+)
RNA-Seq Expression	CmUC11G211530
Synteny	CmUC11G211530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGATGAAAACGTGAATTCCCAACCATTTATGCGTTGGAGAGACCGTTTCCTATTTTGTGCGGAAGCTATTTATAAATCACAGGCTGAAACAGGTGAAATCAAGGGACATTACTTGAATGCTACTGCAGGTACATGCGAAGAAATGATGAAAAGGGCTGTATTTGCCCGAAGGATTGTTCATGGAACTACTATCGAGATTCTTCGGACCATATTTCCTAGTCCTTTGGTTATCCCAACAATGGGGGATAACAACCGCTTATGCGGCCCTTCTTCCTTCCCTTTCTTAGTCCAATCTCGAATGGAACTTTTTTTTAGGATTTCTACTTATATATAGGGTAGGGGGCGGATGTAGCCAAGTGGATCAAGGCAGTGGATTGTGAATCCACCATGCGCGGGTTCAATTCCCGTCGTTCGCCCATAA

mRNA sequence

ATGGCGGATGAAAACGTGAATTCCCAACCATTTATGCGTTGGAGAGACCGTTTCCTATTTTGTGCGGAAGCTATTTATAAATCACAGGCTGAAACAGGTGAAATCAAGGGACATTACTTGAATGCTACTGCAGGTACATGCGAAGAAATGATGAAAAGGGCTGTATTTGCCCGAAGGATTGTTCATGGAACTACTATCGAGATTCTTCGGACCATATTTCCTAGTCCTTTGGTTATCCCAACAATGGGGGATAACAACCGCTTATGCGGCCCTTCTTCCTTCCCTTTCTTACCAAGTGGATCAAGGCAGTGGATTGTGAATCCACCATGCGCGGGTTCAATTCCCGTCGTTCGCCCATAA

Coding sequence (CDS)

ATGGCGGATGAAAACGTGAATTCCCAACCATTTATGCGTTGGAGAGACCGTTTCCTATTTTGTGCGGAAGCTATTTATAAATCACAGGCTGAAACAGGTGAAATCAAGGGACATTACTTGAATGCTACTGCAGGTACATGCGAAGAAATGATGAAAAGGGCTGTATTTGCCCGAAGGATTGTTCATGGAACTACTATCGAGATTCTTCGGACCATATTTCCTAGTCCTTTGGTTATCCCAACAATGGGGGATAACAACCGCTTATGCGGCCCTTCTTCCTTCCCTTTCTTACCAAGTGGATCAAGGCAGTGGATTGTGAATCCACCATGCGCGGGTTCAATTCCCGTCGTTCGCCCATAA

Protein sequence

MADENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRIVHGTTIEILRTIFPSPLVIPTMGDNNRLCGPSSFPFLPSGSRQWIVNPPCAGSIPVVRP

Homology

[Close]

BLAST of CmUC11G211530 vs. NCBI nr
Match: AGL72352.1 (ribulose-1,5-bisphosphate carboxylase large subunit, partial [Nolina bigelovii])

HSP 1 Score: 123.2 bits (308), Expect = 1.5e-24
Identity = 56/58 (96.55%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 3   DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI 61
           DENVNSQPFMRWRDRFLFCAEAIYK+QAETGEIKGHYLNATAGTCEEMMKRAVFARR+
Sbjct: 183 DENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMMKRAVFARRL 240

[Close]

BLAST of CmUC11G211530 vs. NCBI nr
Match: KAG2275616.1 (hypothetical protein Bca52824_058171 [Brassica carinata])

HSP 1 Score: 122.9 bits (307), Expect = 1.9e-24
Identity = 55/58 (94.83%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 3   DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI 61
           DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRA+FAR++
Sbjct: 210 DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAIFARKL 267

[Close]

BLAST of CmUC11G211530 vs. NCBI nr
Match: YP_009476306.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Fraxinus excelsior] >YP_009575772.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Fraxinus mandshurica] >QCQ20610.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Phaseolus vulgaris] >QFK68960.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Phoebe zhennan] >AVM38796.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Fraxinus excelsior] >QBJ06763.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Fraxinus mandshurica])

HSP 1 Score: 122.5 bits (306), Expect = 2.5e-24
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 3   DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI 61
           DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAR +
Sbjct: 210 DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAREL 267

[Close]

BLAST of CmUC11G211530 vs. NCBI nr
Match: AJB84563.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Laportea interrupta] >AJB84564.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Laportea interrupta] >AJB84579.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Laportea ruderalis] >AJB84580.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Laportea ruderalis])

HSP 1 Score: 122.5 bits (306), Expect = 2.5e-24
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 3   DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI 61
           DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAR +
Sbjct: 150 DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAREL 207

[Close]

BLAST of CmUC11G211530 vs. NCBI nr
Match: CAJ86723.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Athanasia trifurcata])

HSP 1 Score: 122.5 bits (306), Expect = 2.5e-24
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 3   DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI 61
           DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAR +
Sbjct: 183 DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAREL 240

[Close]

BLAST of CmUC11G211530 vs. ExPASy Swiss-Prot
Match: Q05554 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Antirrhinum majus OX=4151 GN=rbcL PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 3.3e-27
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 3   DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI 61
           DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAR +
Sbjct: 169 DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAREL 226

[Close]

BLAST of CmUC11G211530 vs. ExPASy Swiss-Prot
Match: P28382 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Barleria prionitis OX=4189 GN=rbcL PE=3 SV=2)

HSP 1 Score: 122.5 bits (306), Expect = 3.3e-27
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 3   DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI 61
           DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAR +
Sbjct: 193 DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAREL 250

[Close]

BLAST of CmUC11G211530 vs. ExPASy Swiss-Prot
Match: P28399 (Ribulose bisphosphate carboxylase large chain OS=Digitalis purpurea OX=4164 GN=rbcL PE=3 SV=2)

HSP 1 Score: 122.5 bits (306), Expect = 3.3e-27
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 3   DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI 61
           DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAR +
Sbjct: 203 DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAREL 260

[Close]

BLAST of CmUC11G211530 vs. ExPASy Swiss-Prot
Match: Q32360 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Galium scabrum OX=29794 GN=rbcL PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 3.3e-27
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 3   DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI 61
           DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAR +
Sbjct: 203 DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAREL 260

[Close]

BLAST of CmUC11G211530 vs. ExPASy Swiss-Prot
Match: Q33584 (Ribulose bisphosphate carboxylase large chain OS=Lathraea clandestina OX=41911 GN=rbcL PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 3.3e-27
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 3   DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI 61
           DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAR +
Sbjct: 203 DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAREL 260

[Close]

BLAST of CmUC11G211530 vs. ExPASy TrEMBL
Match: R4QG37 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Nolina bigelovii OX=1315764 GN=rbcL PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 7.1e-25
Identity = 56/58 (96.55%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 3   DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI 61
           DENVNSQPFMRWRDRFLFCAEAIYK+QAETGEIKGHYLNATAGTCEEMMKRAVFARR+
Sbjct: 183 DENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMMKRAVFARRL 240

[Close]

BLAST of CmUC11G211530 vs. ExPASy TrEMBL
Match: Q8SLM7 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Cornus suecica OX=164435 GN=rbcL PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.2e-24
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 3   DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI 61
           DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAR +
Sbjct: 185 DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAREL 242

[Close]

BLAST of CmUC11G211530 vs. ExPASy TrEMBL
Match: C4MXK3 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Chuquiraga morenonis OX=516720 GN=rbcL PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.2e-24
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 3   DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI 61
           DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAR +
Sbjct: 189 DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAREL 246

[Close]

BLAST of CmUC11G211530 vs. ExPASy TrEMBL
Match: A0A0F7EX19 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Rubia pallida OX=1650712 GN=rbcL PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.2e-24
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 3   DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI 61
           DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAR +
Sbjct: 185 DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAREL 242

[Close]

BLAST of CmUC11G211530 vs. ExPASy TrEMBL
Match: E5RNG3 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Salvia nipponica var. kisoensis OX=707368 GN=rbcL PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.2e-24
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 3   DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI 61
           DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAR +
Sbjct: 187 DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAREL 244

[Close]

BLAST of CmUC11G211530 vs. TAIR 10
Match: ATCG00490.1 (ribulose-bisphosphate carboxylases )

HSP 1 Score: 120.9 bits (302), Expect = 6.8e-28
Identity = 55/58 (94.83%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 3   DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI 61
           DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEM+KRAVFAR +
Sbjct: 203 DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMIKRAVFAREL 260

[Close]

BLAST of CmUC11G211530 vs. TAIR 10
Match: ATMG00280.1 (Ribulose bisphosphate carboxylase large chain, catalytic domain )

HSP 1 Score: 116.7 bits (291), Expect = 1.3e-26
Identity = 52/58 (89.66%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 3  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI 61
          DENVNSQPFMRWRDRFLFCAEA+YK+QAETG IKGHYLNATAGTCEEM+KRAVFAR +
Sbjct: 35 DENVNSQPFMRWRDRFLFCAEAVYKAQAETGGIKGHYLNATAGTCEEMIKRAVFAREL 92

[Close]

BLAST of CmUC11G211530 vs. TAIR 10
Match: AT2G07732.1 (Ribulose bisphosphate carboxylase large chain, catalytic domain )

HSP 1 Score: 114.8 bits (286), Expect = 4.8e-26
Identity = 51/58 (87.93%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 3  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI 61
          DENVNSQPFMRWRDRFLFCAEA+YK+QAETG IKGHYLNAT GTCEEM+KRAVFAR +
Sbjct: 35 DENVNSQPFMRWRDRFLFCAEAVYKAQAETGGIKGHYLNATPGTCEEMIKRAVFAREL 92

The following BLAST results are available for this feature:

BLAST of CmUC11G211530 vs. NCBI nr


Match Name	E-value	Identity	Description
AGL72352.1	1.5e-24	96.55	ribulose-1,5-bisphosphate carboxylase large subunit, partial [Nolina bigelovii]	[more]
KAG2275616.1	1.9e-24	94.83	hypothetical protein Bca52824_058171 [Brassica carinata]	[more]
YP_009476306.1	2.5e-24	96.55	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Fraxinus excelsio...	[more]
AJB84563.1	2.5e-24	96.55	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Laportea...	[more]
CAJ86723.1	2.5e-24	96.55	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Athanasi...	[more]

BLAST of CmUC11G211530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q05554	3.3e-27	96.55	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Antirrhinum majus OX...	[more]
P28382	3.3e-27	96.55	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Barleria prionitis O...	[more]
P28399	3.3e-27	96.55	Ribulose bisphosphate carboxylase large chain OS=Digitalis purpurea OX=4164 GN=r...	[more]
Q32360	3.3e-27	96.55	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Galium scabrum OX=29...	[more]
Q33584	3.3e-27	96.55	Ribulose bisphosphate carboxylase large chain OS=Lathraea clandestina OX=41911 G...	[more]

BLAST of CmUC11G211530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
R4QG37	7.1e-25	96.55	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Nolina bigelovii OX=...	[more]
Q8SLM7	1.2e-24	96.55	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Cornus suecica OX=16...	[more]
C4MXK3	1.2e-24	96.55	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Chuquiraga morenonis...	[more]
A0A0F7EX19	1.2e-24	96.55	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Rubia pallida OX=165...	[more]
E5RNG3	1.2e-24	96.55	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Salvia nipponica var...	[more]

BLAST of CmUC11G211530 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00490.1	6.8e-28	94.83	ribulose-bisphosphate carboxylases	[more]
ATMG00280.1	1.3e-26	89.66	Ribulose bisphosphate carboxylase large chain, catalytic domain	[more]
AT2G07732.1	4.8e-26	87.93	Ribulose bisphosphate carboxylase large chain, catalytic domain	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	GENE3D	3.20.20.110		coord: 1..84 e-value: 5.7E-23 score: 83.5
IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	SUPERFAMILY	51649	RuBisCo, C-terminal domain	coord: 3..69
IPR000685	Ribulose bisphosphate carboxylase, large subunit, C-terminal	PFAM	PF00016	RuBisCO_large	coord: 3..60 e-value: 3.3E-19 score: 69.2
None	No IPR available	PANTHER	PTHR47910	RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN, CATALYTIC DOMAIN-CONTAINING PROTEIN	coord: 3..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC11G211530.1	CmUC11G211530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
biological_process	GO:0009853	photorespiration
biological_process	GO:0019253	reductive pentose-phosphate cycle
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0016984	ribulose-bisphosphate carboxylase activity