CmUC11G211430 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC11G211430
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	DNA-directed RNA polymerase subunit beta'
Location	CmU531Chr11: 7795296 .. 7796781 (-)
RNA-Seq Expression	CmUC11G211430
Synteny	CmUC11G211430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGAAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCATGTACTTGGAAACCTCCTATTTGCCAATACAAATGTTGGCCGACTTCCACACCAGATATATCGTATAACCCTTTTTGTGTGTTGATAGAACATAATAGAATATTCATATTGCCCTCTGAAAGAAATAGAACTGTAAAACAAATTATTTTGATTCAAGAGGCCCTTAATGAAATTTCTTAATAGGAACTACACCCATTAAAAATTTCTTTGGTTAGCTAATATATTTTGTCTAATAACGTACAAATATATATGATCAGGGATACTTCCAGCAAGAAATATATCGACGAGTTAGTGTCGGGTTAGCCGAAAATCAAAGTTTATCAGAAGCTTGGTCTAAAATTCCTGAAAAATTAGCTTTTTATGATTATATCGGGAATAATCCCGCAAAAGGTGGATTATTCAGAGATCGAAAAGTTGGAAGAAGAAAGGATTTTTTGGTTAGACGTATGGAATTAGCTAAGCATTTTATTCGAACAAATATAGAACCCGAATGGATGGTTTTATGTCTATTACCTGTTCTTCCTCCCGAGCTGAGACCGATCATTCAGATAGATGGGGGTAAACTAATGAGCTCGGATATTAATGAACTCTATAGAAGAGTTATCTATCGGAACAATACTCTTATTGATCTATTAACAACAAGTAGATCTACGCCAGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCACGAACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGGGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAGGTCCCTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGGAAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCATATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAAGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCCGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTTCAGCTATTGGCTTTTGATCCAAACGCACCTCGGTACTTCCATCCGCCATCAACAGGCCTAAGCAGGCCTAGTAGCTTTCATATTCCCGTATGA

mRNA sequence

ATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGAAGGTAGGGGTGCAGAGACAGCCAGGAGAACCCGAATGGATGGTTTTATGTCTATTACCTGTTCTTCCTCCCGAGCTGAGACCGATCATTCAGATAGATGGGGGTAAACTAATGAGCTCGGATATTAATGAACTCTATAGAAGAGTTATCTATCGGAACAATACTCTTATTGATCTATTAACAACAAGTAGATCTACGCCAGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCACGAACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGGGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAGGTCCCTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGGAAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCATATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAAGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCCGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGCTATTGGCTTTTGATCCAAACGCACCTCGGTACTTCCATCCGCCATCAACAGGCCTAAGCAGGCCTAGTAGCTTTCATATTCCCGTATGA

Coding sequence (CDS)

ATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGAAGGTAGGGGTGCAGAGACAGCCAGGAGAACCCGAATGGATGGTTTTATGTCTATTACCTGTTCTTCCTCCCGAGCTGAGACCGATCATTCAGATAGATGGGGGTAAACTAATGAGCTCGGATATTAATGAACTCTATAGAAGAGTTATCTATCGGAACAATACTCTTATTGATCTATTAACAACAAGTAGATCTACGCCAGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCACGAACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGGGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAGGTCCCTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGGAAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCATATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAAGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCCGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGCTATTGGCTTTTGATCCAAACGCACCTCGGTACTTCCATCCGCCATCAACAGGCCTAAGCAGGCCTAGTAGCTTTCATATTCCCGTATGA

Protein sequence

MGDKLHRREGNSPDHQLRPLNDRSVIKKVGVQRQPGEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIHEQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIRKKEPIVWEILQEVMQGHPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAELLAFDPNAPRYFHPPSTGLSRPSSFHIPV

Homology

[Close]

BLAST of CmUC11G211430 vs. NCBI nr
Match: AHM88912.1 (RNA polymerase beta [Lagenaria siceraria])

HSP 1 Score: 498.0 bits (1281), Expect = 5.8e-137
Identity = 245/249 (98.39%), Postives = 247/249 (99.20%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE
Sbjct: 260 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 319

Query: 97  LVMCQEKLVQEAVDTLLDNGIHEQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 156
           LVMCQEKLVQEAVDTLLDNGI  QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS
Sbjct: 320 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIRKKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIR+KEPIVWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 439

Query: 217 ILQEVMQGHPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQGHP+LLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 499

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 500 PLSLEAQAE 508

[Close]

BLAST of CmUC11G211430 vs. NCBI nr
Match: ASY96794.1 (RNA polymerase beta' subunit [Cucumis melo var. momordica] >ASY96968.1 RNA polymerase beta' subunit [Cucumis melo var. cantalupo] >ASY97316.1 RNA polymerase beta' subunit [Cucumis melo var. flexuosus] >ASY97055.1 RNA polymerase beta' subunit [Cucumis melo var. cantalupo] >ASY97229.1 RNA polymerase beta' subunit [Cucumis melo var. cantalupo])

HSP 1 Score: 498.0 bits (1281), Expect = 5.8e-137
Identity = 245/249 (98.39%), Postives = 247/249 (99.20%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE
Sbjct: 261 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 320

Query: 97  LVMCQEKLVQEAVDTLLDNGIHEQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 156
           LVMCQEKLVQEAVDTLLDNGI  QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS
Sbjct: 321 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 380

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIRKKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIR+KEPIVWE
Sbjct: 381 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 440

Query: 217 ILQEVMQGHPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQGHP+LLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 441 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 500

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 501 PLSLEAQAE 509

[Close]

BLAST of CmUC11G211430 vs. NCBI nr
Match: AHM88970.1 (RNA polymerase beta [Lagenaria siceraria])

HSP 1 Score: 498.0 bits (1281), Expect = 5.8e-137
Identity = 245/249 (98.39%), Postives = 247/249 (99.20%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE
Sbjct: 260 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 319

Query: 97  LVMCQEKLVQEAVDTLLDNGIHEQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 156
           LVMCQEKLVQEAVDTLLDNGI  QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS
Sbjct: 320 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIRKKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIR+KEPIVWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 439

Query: 217 ILQEVMQGHPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQGHP+LLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 499

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 500 PLSLEAQAE 508

[Close]

BLAST of CmUC11G211430 vs. NCBI nr
Match: YP_009560826.1 (RpoC1 [Trichosanthes kirilowii] >YP_009752403.1 RNA polymerase beta' subunit [Trichosanthes tricuspidata] >YP_009753696.1 RNA polymerase beta' subunit [Trichosanthes nervifolia] >QAB33258.1 RpoC1 [Trichosanthes kirilowii] >QIT04799.1 RNA polymerase beta' subunit [Trichosanthes tricuspidata] >QIT05307.1 RNA polymerase beta' subunit [Trichosanthes nervifolia])

HSP 1 Score: 498.0 bits (1281), Expect = 5.8e-137
Identity = 245/249 (98.39%), Postives = 247/249 (99.20%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE
Sbjct: 260 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 319

Query: 97  LVMCQEKLVQEAVDTLLDNGIHEQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 156
           LVMCQEKLVQEAVDTLLDNGI  QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS
Sbjct: 320 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIRKKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIR+KEPIVWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 439

Query: 217 ILQEVMQGHPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQGHP+LLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 499

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 500 PLSLEAQAE 508

[Close]

BLAST of CmUC11G211430 vs. NCBI nr
Match: AHM91152.1 (RNA polymerase beta, partial [Lagenaria siceraria])

HSP 1 Score: 498.0 bits (1281), Expect = 5.8e-137
Identity = 245/249 (98.39%), Postives = 247/249 (99.20%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE
Sbjct: 260 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 319

Query: 97  LVMCQEKLVQEAVDTLLDNGIHEQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 156
           LVMCQEKLVQEAVDTLLDNGI  QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS
Sbjct: 320 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIRKKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIR+KEPIVWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 439

Query: 217 ILQEVMQGHPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQGHP+LLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 499

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 500 PLSLEAQAE 508

[Close]

BLAST of CmUC11G211430 vs. ExPASy Swiss-Prot
Match: Q4VZP2 (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE=3 SV=3)

HSP 1 Score: 498.0 bits (1281), Expect = 7.6e-140
Identity = 245/249 (98.39%), Postives = 247/249 (99.20%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE
Sbjct: 260 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 319

Query: 97  LVMCQEKLVQEAVDTLLDNGIHEQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 156
           LVMCQEKLVQEAVDTLLDNGI  QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS
Sbjct: 320 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIRKKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIR+KEPIVWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 439

Query: 217 ILQEVMQGHPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQGHP+LLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 499

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 500 PLSLEAQAE 508

[Close]

BLAST of CmUC11G211430 vs. ExPASy Swiss-Prot
Match: Q8HVY4 (DNA-directed RNA polymerase subunit beta' OS=Glycine max OX=3847 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 495.7 bits (1275), Expect = 3.8e-139
Identity = 242/249 (97.19%), Postives = 247/249 (99.20%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE
Sbjct: 262 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 321

Query: 97  LVMCQEKLVQEAVDTLLDNGIHEQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 156
           LVMCQEKLVQEAVDTLLDNGI  QPMRDGHNKVYKSFSD+IEGKEGRFRETLLGKRVDYS
Sbjct: 322 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDIIEGKEGRFRETLLGKRVDYS 381

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIRKKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR+HFASNIG+AKSKIR+KEPIVWE
Sbjct: 382 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRKHFASNIGIAKSKIREKEPIVWE 441

Query: 217 ILQEVMQGHPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQGHP+LLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 442 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 501

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 502 PLSLEAQAE 510

[Close]

BLAST of CmUC11G211430 vs. ExPASy Swiss-Prot
Match: Q09X26 (DNA-directed RNA polymerase subunit beta' OS=Morus indica OX=248361 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 491.5 bits (1264), Expect = 7.1e-138
Identity = 239/249 (95.98%), Postives = 245/249 (98.39%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE
Sbjct: 260 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 319

Query: 97  LVMCQEKLVQEAVDTLLDNGIHEQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 156
           LVMCQEKLVQEAVDTL DNGI  QPMRDGHNKVYKSFSD+IEGKEGRFRETLLGKRVDYS
Sbjct: 320 LVMCQEKLVQEAVDTLFDNGIRGQPMRDGHNKVYKSFSDIIEGKEGRFRETLLGKRVDYS 379

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIRKKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQHFASNIGVAKSKIR+KEP+VWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWE 439

Query: 217 ILQEVMQGHPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQ+VMQGHP+LLNRAPTLHRLGIQAFQPILVEG AICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 440 ILQDVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHV 499

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 500 PLSLEAQAE 508

[Close]

BLAST of CmUC11G211430 vs. ExPASy Swiss-Prot
Match: Q9BBS8 (DNA-directed RNA polymerase subunit beta' OS=Lotus japonicus OX=34305 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 491.1 bits (1263), Expect = 9.2e-138
Identity = 240/249 (96.39%), Postives = 246/249 (98.80%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE
Sbjct: 262 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 321

Query: 97  LVMCQEKLVQEAVDTLLDNGIHEQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 156
           LVMCQEKLVQEAVDTLLDNGI  QPM+DGHNKVYKSFSD+IEGKEGRFRETLLGKRVDYS
Sbjct: 322 LVMCQEKLVQEAVDTLLDNGIRGQPMKDGHNKVYKSFSDIIEGKEGRFRETLLGKRVDYS 381

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIRKKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIR LIR+HFASNIGVAKSKIR+KEPIVWE
Sbjct: 382 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRSLIRKHFASNIGVAKSKIREKEPIVWE 441

Query: 217 ILQEVMQGHPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVM+GHPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMA+HV
Sbjct: 442 ILQEVMRGHPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAIHV 501

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 502 PLSLEAQAE 510

[Close]

BLAST of CmUC11G211430 vs. ExPASy Swiss-Prot
Match: Q8S8Y0 (DNA-directed RNA polymerase subunit beta' OS=Atropa belladonna OX=33113 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 490.7 bits (1262), Expect = 1.2e-137
Identity = 240/249 (96.39%), Postives = 244/249 (97.99%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTL DLLTTSRSTPGE
Sbjct: 260 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 319

Query: 97  LVMCQEKLVQEAVDTLLDNGIHEQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 156
           LVMCQEKLVQEAVDTLLDNGI  QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS
Sbjct: 320 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIRKKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAKSKIR+KEPIVWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWE 439

Query: 217 ILQEVMQGHPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQGHP+LLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHV 499

Query: 277 PLSLEAQAE 286
           PLSLEAQ E
Sbjct: 500 PLSLEAQVE 508

[Close]

BLAST of CmUC11G211430 vs. ExPASy TrEMBL
Match: A0A218KG20 (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus var. hardwickii OX=319220 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 498.0 bits (1281), Expect = 2.8e-137
Identity = 245/249 (98.39%), Postives = 247/249 (99.20%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE
Sbjct: 260 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 319

Query: 97  LVMCQEKLVQEAVDTLLDNGIHEQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 156
           LVMCQEKLVQEAVDTLLDNGI  QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS
Sbjct: 320 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIRKKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIR+KEPIVWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 439

Query: 217 ILQEVMQGHPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQGHP+LLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 499

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 500 PLSLEAQAE 508

[Close]

BLAST of CmUC11G211430 vs. ExPASy TrEMBL
Match: A0A6M3S6B8 (DNA-directed RNA polymerase subunit beta' OS=Trichosanthes kirilowii OX=3677 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 498.0 bits (1281), Expect = 2.8e-137
Identity = 245/249 (98.39%), Postives = 247/249 (99.20%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE
Sbjct: 261 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 320

Query: 97  LVMCQEKLVQEAVDTLLDNGIHEQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 156
           LVMCQEKLVQEAVDTLLDNGI  QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS
Sbjct: 321 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 380

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIRKKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIR+KEPIVWE
Sbjct: 381 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 440

Query: 217 ILQEVMQGHPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQGHP+LLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 441 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 500

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 501 PLSLEAQAE 509

[Close]

BLAST of CmUC11G211430 vs. ExPASy TrEMBL
Match: A0A1X9Q1T5 (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 498.0 bits (1281), Expect = 2.8e-137
Identity = 245/249 (98.39%), Postives = 247/249 (99.20%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE
Sbjct: 260 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 319

Query: 97  LVMCQEKLVQEAVDTLLDNGIHEQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 156
           LVMCQEKLVQEAVDTLLDNGI  QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS
Sbjct: 320 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIRKKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIR+KEPIVWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 439

Query: 217 ILQEVMQGHPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQGHP+LLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 499

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 500 PLSLEAQAE 508

[Close]

BLAST of CmUC11G211430 vs. ExPASy TrEMBL
Match: A0A249RZJ2 (DNA-directed RNA polymerase subunit beta' OS=Cucumis melo var. cantalupensis OX=3658 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 498.0 bits (1281), Expect = 2.8e-137
Identity = 245/249 (98.39%), Postives = 247/249 (99.20%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE
Sbjct: 261 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 320

Query: 97  LVMCQEKLVQEAVDTLLDNGIHEQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 156
           LVMCQEKLVQEAVDTLLDNGI  QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS
Sbjct: 321 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 380

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIRKKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIR+KEPIVWE
Sbjct: 381 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 440

Query: 217 ILQEVMQGHPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQGHP+LLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 441 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 500

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 501 PLSLEAQAE 509

[Close]

BLAST of CmUC11G211430 vs. ExPASy TrEMBL
Match: A0A1P8LE65 (DNA-directed RNA polymerase subunit gamma OS=Citrullus mucosospermus OX=519315 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 498.0 bits (1281), Expect = 2.8e-137
Identity = 245/249 (98.39%), Postives = 247/249 (99.20%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE
Sbjct: 261 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 320

Query: 97  LVMCQEKLVQEAVDTLLDNGIHEQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 156
           LVMCQEKLVQEAVDTLLDNGI  QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS
Sbjct: 321 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 380

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIRKKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIR+KEPIVWE
Sbjct: 381 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 440

Query: 217 ILQEVMQGHPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQGHP+LLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 441 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 500

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 501 PLSLEAQAE 509

[Close]

BLAST of CmUC11G211430 vs. TAIR 10
Match: ATCG00180.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 485.3 bits (1248), Expect = 3.6e-137
Identity = 237/249 (95.18%), Postives = 244/249 (97.99%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQI+GGKLMSSDINELYRRVIYRNNTL DLLTTSRSTPGE
Sbjct: 260 EPEWMVLCLLPVLPPELRPIIQIEGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 319

Query: 97  LVMCQEKLVQEAVDTLLDNGIHEQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 156
           LVMCQEKLVQEAVDTLLDNGI  QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS
Sbjct: 320 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIRKKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAKS+IR+K+PIVWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSQIREKKPIVWE 439

Query: 217 ILQEVMQGHPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQGHP+LLNRAPTLHRLGIQ+FQPILVEGR ICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQSFQPILVEGRTICLHPLVCKGFNADFDGDQMAVHV 499

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 500 PLSLEAQAE 508

[Close]

BLAST of CmUC11G211430 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 122.1 bits (305), Expect = 8.0e-28
Identity = 91/328 (27.74%), Postives = 149/328 (45.43%), Query Frame = 0


Query: 4   KLHRREGNSPDHQLRPLN-------DR--SVIKKV--------GVQRQPGEPEWMVLCLL 63
           K+ R++ + PD    P         DR  SV+K++        G   +   P+WM+L +L
Sbjct: 191 KIQRKKNDEPDQLPEPAERKQTLGADRVLSVLKRISDADCQLLGFNPKFARPDWMILEVL 250

Query: 64  PVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQ 123
           P+ PP +RP + +D       D+      +I  N  L          P  ++    +L+Q
Sbjct: 251 PIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENL--KRQEKNGAPAHIISEFTQLLQ 310

Query: 124 EAVDTLLDNGIHEQP-MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGP 183
             + T  DN +  QP       +  KS    ++ KEGR R  L+GKRVD+S R+VI   P
Sbjct: 311 FHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP 370

Query: 184 SLSLHRCGLPREIAIEL--------FQTFLIRGLI--RQHFASNIGVAKSKIR------- 243
           ++++   G+P  IA+ L        +    ++ L+    H       AK  IR       
Sbjct: 371 TINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLD 430

Query: 244 ----KKE-----PIVWEILQEVMQGHPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLV 288
               KK       + +++ + +  G  +L NR P+LH++ I   +  ++      L+  V
Sbjct: 431 LRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSV 490

[Close]

BLAST of CmUC11G211430 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 105.5 bits (262), Expect = 7.8e-23
Identity = 75/277 (27.08%), Postives = 134/277 (48.38%), Query Frame = 0


Query: 38  PEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGEL 97
           PE +++  + V P  +RP + I G +   +D+    +++I  N +L  +L+   S+P  +
Sbjct: 250 PENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTSSPKNM 309

Query: 98  VMCQEKLVQEAVDTLLDN---GIHEQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVD 157
            +     VQ  V   +++   G   QP     + + +     ++GK GRFR  L GKRV+
Sbjct: 310 QVWD--TVQIEVARYINSEVRGCQNQPEEHPLSGILQR----LKGKGGRFRANLSGKRVE 369

Query: 158 YSGRSVIVVGPSLSLHRCGLPREIA-------------IELFQTFLIRGLIRQHFASN-- 217
           ++GR+VI   P+L +   G+P  +A             IE  +  +  G  +   A N  
Sbjct: 370 FTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVR 429

Query: 218 ---------IGVAKSKIRKKEPIVWEILQEVMQGHPILLNRAPTLHRLGIQAFQPILVEG 277
                    +G  + +I  +  I   + + + +G  +L NR P+LHR+ I   +  ++  
Sbjct: 430 YPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARIMPW 489

Query: 278 RAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAELL 288
           R +  +  VC  +NADFDGD+M +HVP + EA+ E +
Sbjct: 490 RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAI 520

[Close]

BLAST of CmUC11G211430 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 105.5 bits (262), Expect = 7.8e-23
Identity = 75/277 (27.08%), Postives = 134/277 (48.38%), Query Frame = 0


Query: 38  PEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGEL 97
           PE +++  + V P  +RP + I G +   +D+    +++I  N +L  +L+   S+P  +
Sbjct: 260 PENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTSSPKNM 319

Query: 98  VMCQEKLVQEAVDTLLDN---GIHEQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVD 157
            +     VQ  V   +++   G   QP     + + +     ++GK GRFR  L GKRV+
Sbjct: 320 QVWD--TVQIEVARYINSEVRGCQNQPEEHPLSGILQR----LKGKGGRFRANLSGKRVE 379

Query: 158 YSGRSVIVVGPSLSLHRCGLPREIA-------------IELFQTFLIRGLIRQHFASN-- 217
           ++GR+VI   P+L +   G+P  +A             IE  +  +  G  +   A N  
Sbjct: 380 FTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVR 439

Query: 218 ---------IGVAKSKIRKKEPIVWEILQEVMQGHPILLNRAPTLHRLGIQAFQPILVEG 277
                    +G  + +I  +  I   + + + +G  +L NR P+LHR+ I   +  ++  
Sbjct: 440 YPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARIMPW 499

Query: 278 RAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAELL 288
           R +  +  VC  +NADFDGD+M +HVP + EA+ E +
Sbjct: 500 RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAI 530

[Close]

BLAST of CmUC11G211430 vs. TAIR 10
Match: AT1G63020.1 (nuclear RNA polymerase D1A )

HSP 1 Score: 81.6 bits (200), Expect = 1.2e-15
Identity = 68/267 (25.47%), Postives = 124/267 (46.44%), Query Frame = 0


Query: 43  LCLLPVLPPELRP---IIQIDGGKLMSSDINELYRRVI-YRNNTLIDLLTTSRSTPGELV 102
           L   PV P   R    + Q +G +L+  +   +Y++++ +  NTL             ++
Sbjct: 220 LTSFPVTPNGYRVTEIVHQFNGARLIFDERTRIYKKLVGFEGNTL--------ELSSRVM 279

Query: 103 MCQE--KLVQEAVDTLLDNGIHEQPMRDGHNKVYKSFSDVIEGKEGRF-RETLLGKRVDY 162
            C +  +L  E V +  D+              Y+  SD  +    RF ++ LLGKR D+
Sbjct: 280 ECMQYSRLFSETVSSSKDSA-----------NPYQKKSDTPKLCGLRFMKDVLLGKRSDH 339

Query: 163 SGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASN-----IGVAKSKIRKK 222
           + R+V+V  PSL L+  G+P  IA  L  +  +    ++   ++     +   +  +R+ 
Sbjct: 340 TFRTVVVGDPSLKLNEIGIPESIAKRLQVSEHLNQCNKERLVTSFVPTLLDNKEMHVRRG 399

Query: 223 EPIVW----------EILQEVMQGHPILLNRAPTLHRLGIQAFQ-PILVEGRAICLHPLV 282
           + +V           +I + +M G  +L+NR P++H+  + A    IL     + L+P+ 
Sbjct: 400 DRLVAIQVNDLQTGDKIFRSLMDGDTVLMNRPPSIHQHSLIAMTVRILPTTSVVSLNPIC 459

Query: 283 CKGFNADFDGDQMAVHVPLSLEAQAEL 287
           C  F  DFDGD +  +VP S++A+ EL
Sbjct: 460 CLPFRGDFDGDCLHGYVPQSIQAKVEL 467

The following BLAST results are available for this feature:

BLAST of CmUC11G211430 vs. NCBI nr


Match Name	E-value	Identity	Description
AHM88912.1	5.8e-137	98.39	RNA polymerase beta [Lagenaria siceraria]	[more]
ASY96794.1	5.8e-137	98.39	RNA polymerase beta' subunit [Cucumis melo var. momordica] >ASY96968.1 RNA polym...	[more]
AHM88970.1	5.8e-137	98.39	RNA polymerase beta [Lagenaria siceraria]	[more]
YP_009560826.1	5.8e-137	98.39	RpoC1 [Trichosanthes kirilowii] >YP_009752403.1 RNA polymerase beta' subunit [Tr...	[more]
AHM91152.1	5.8e-137	98.39	RNA polymerase beta, partial [Lagenaria siceraria]	[more]

BLAST of CmUC11G211430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP2	7.6e-140	98.39	DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE...	[more]
Q8HVY4	3.8e-139	97.19	DNA-directed RNA polymerase subunit beta' OS=Glycine max OX=3847 GN=rpoC1 PE=3 S...	[more]
Q09X26	7.1e-138	95.98	DNA-directed RNA polymerase subunit beta' OS=Morus indica OX=248361 GN=rpoC1 PE=...	[more]
Q9BBS8	9.2e-138	96.39	DNA-directed RNA polymerase subunit beta' OS=Lotus japonicus OX=34305 GN=rpoC1 P...	[more]
Q8S8Y0	1.2e-137	96.39	DNA-directed RNA polymerase subunit beta' OS=Atropa belladonna OX=33113 GN=rpoC1...	[more]

BLAST of CmUC11G211430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A218KG20	2.8e-137	98.39	DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus var. hardwickii OX=...	[more]
A0A6M3S6B8	2.8e-137	98.39	DNA-directed RNA polymerase subunit beta' OS=Trichosanthes kirilowii OX=3677 GN=...	[more]
A0A1X9Q1T5	2.8e-137	98.39	DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE...	[more]
A0A249RZJ2	2.8e-137	98.39	DNA-directed RNA polymerase subunit beta' OS=Cucumis melo var. cantalupensis OX=...	[more]
A0A1P8LE65	2.8e-137	98.39	DNA-directed RNA polymerase subunit gamma OS=Citrullus mucosospermus OX=519315 G...	[more]

BLAST of CmUC11G211430 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00180.1	3.6e-137	95.18	DNA-directed RNA polymerase family protein	[more]
AT4G35800.1	8.0e-28	27.74	RNA polymerase II large subunit	[more]
AT5G60040.1	7.8e-23	27.08	nuclear RNA polymerase C1	[more]
AT5G60040.2	7.8e-23	27.08	nuclear RNA polymerase C1	[more]
AT1G63020.1	1.2e-15	25.47	nuclear RNA polymerase D1A	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006592	RNA polymerase, N-terminal	SMART	SM00663	rpolaneu7	coord: 39..305 e-value: 8.0E-123 score: 424.0
None	No IPR available	GENE3D	1.10.40.90		coord: 178..220 e-value: 1.4E-16 score: 62.3
None	No IPR available	GENE3D	2.40.40.20		coord: 141..299 e-value: 7.9E-41 score: 141.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 33..285
None	No IPR available	PANTHER	PTHR19376:SF54	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA'	coord: 33..285
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 31..288
IPR000722	RNA polymerase, alpha subunit	PFAM	PF00623	RNA_pol_Rpb1_2	coord: 204..287 e-value: 1.7E-25 score: 90.1 coord: 150..197 e-value: 1.5E-7 score: 31.8
IPR007080	RNA polymerase Rpb1, domain 1	PFAM	PF04997	RNA_pol_Rpb1_1	coord: 26..148 e-value: 2.0E-32 score: 112.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC11G211430.1	CmUC11G211430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0008270	zinc ion binding