CmUC11G211420 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC11G211420
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	DNA-directed RNA polymerase subunit beta
Location	CmU531Chr11: 7793761 .. 7797358 (+)
RNA-Seq Expression	CmUC11G211420
Synteny	CmUC11G211420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATGGGAAGGTTACAATTCTGAAGATGCGGTACTAATTAGCGAGCGTCTGGTATATGAAGATATTTATACTTCTTTCCACATACGAAAATATGAAATTCAAACTCATGTGACAAGCCACGGACCTGAAAGAATCACTAACGAAATACCACATTTAGAAGCCCGCTTACTCCATAATTTAGACAAAAATGGAATTGTGATGCTGGGATCGTGGGTGGAGACGGGCGAGATTTTAGTAGGTAAATTAACGCCTCAGATGGCGAAAGAATCATCGTATGCCCCGGAAGATAGATTATTACGAGCCATACTTGGCATTCAGGTATCCACTTCAAAAGAAACCTGTCTAAAACTACCTATAGGCGGTAGGGGTCGAGTTATTGATGTGAGATGGATCCAGAAAAAAGGGGGTTCGAGTTATAATCCAGAAATGATTCGTGTATATATTTCACAGAAACGTGAAATCAAAGTAGGCGATAAGGTAGCAGGAAGACATGGAAATAAAGGTATTGTTTCAAAAATTTTGCCTAGAGAAGATATGCCCCATTGTTCCCTGCTCTAACTCCTCCGATTTCCCTTTGCTTTCTTTATTACTTATCGCACGTGCCCAGTCTCAACGTCACTTCGGCTCGATCCCGGATCTGAAACGACGCTACGGGATATAATATATTAAACGACTACATCAATCCTAAGGATCCATAGGCTTAATTGCGGATCTAGCACAACAATAAAAATGTTTAAGTTGTTTCGTCTTAGATTTTGATTTCAATTTTGTATATCTAGCATTTATCAAATTTGAAAAAGGGTCAGAAGAAATGGTTCAATCCTCTTATTTTGATTTCTCGAACCGAGAGATCCATGAATCGGGATCCTAATGCATATAGATACAAATGGTCCAATGGGAGCAAGAATTTCCAGGAACATTTCATTTCTGAGCAGAAGAGCCATTTTAATTTTTAAGTAGTGTTCGATCGATTACGTATTAATCAATATTCGATTGATTGGTCTGAGGTTATCGATAAAAAAGATTTGTCTAAGTCACTTCGTTTCTTTTTGTCCAAGTTACTTGTTTTTTTGTCCAAGTTTCTTCTCTTTTTGTCTAACTCACTTCCTTTTTTCTTTGTGAGTTTCGGGAATATCCCCATTCATAGGTCCGAGATCCACATCTATGAATTGAAAGGTCCGAATGATCAACTCTGCAATCAGTTGTTAGAATCAATAGGTCTTCAAATCGTTCATTTGAAAAAATTGAAACCCTTCTTATTGGATGATCATGATACTTCCCAAAAATCAAAATTTTTGATCAATGGAGGAACAATATCACCATTTTTGTTCAATAAGATACCAAAGTGGATGATTGACTCATTCCATACTAGAAATAATCGCAGGAAATCCTTTGATAACACGGATTCCTATTTCTCAATGATATCCCACGATCAAGACAATTGGCTAAATCCCCCCCATCCCTACTTGACTAAGCTAAGGAACTACTGAAAATGGCACGAAATCACAGACGGAAGTAATCAATCACGCTACTCATACGGGAATATGAAAGCTACTAGGCCTGCTTAGGCCTGTTGATGGCGGATGGAAGTACCGAGGTGCGTTTGGATCAAAAGCCAATAGCTGAAGACAAGAGATTCATATGAGAAAACATAAGTAAACGCGCCTCTGCTTGAGCCTCCAAAGATAAAGGTACATGAACAGCCATTTGATCCCCATCAAAGTCGGCATTGAATCCCTTACAAACTAATGGATGTAAACAAATAGCACGTCCTTCCACTAAAATAGGTTGGAAGGCTTGGATGCCTAATCTATGCAGAGTAGGCGCTCTATTTAGCAATATGGGATGCCCCTGCATAACTTCCTGAAGTATTTCCCATACAATGGGTTCTTTTTTCCGAATTTTACTCTTAGCAACTCCTATGTTCGAAGCAAAATGTTGTCGAATTAGACCACGAATTAAAAATGTCTGGAAAAGCTCTATTGCGATTTCGCGAGGCAATCCACATCGATGTAATGAAAGTGAGGGACCTACAACAATCACAGAACGTCCTGAATAATCGACCCGTTTGCCAAGCAGAGTCTCCCGAAATCTTCCCTCTTTGCCTTCAATTACATCGGAAAACGACTTGTAAACCTTATTATGGCCATCCCTCATTGGTTGTTCGTGGATTCCATTATCAAGAAGTGTATCCACGGCTTCTTGTACCAATTTCTCCTGACACATTACTAATTCTCCTGGCGTAGATCTACTTGTTGTTAATAGATCAATAAGAGTATTGTTCCGATAGATAACTCTTCTATAGAGTTCATTAATATCCGAGCTCATTAGTTTACCCCCATCTATCTGAATGATCGGTCTCAGCTCGGGAGGAAGAACAGGTAATAGACATAAAACCATCCATTCGGGTTCTATATTTGTTCGAATAAAATGCTTAGCTAATTCCATACGTCTAACCAAAAAATCCTTTCTTCTTCCAACTTTTCGATCTCTGAATAATCCACCTTTTGCGGGATTATTCCCGATATAATCATAAAAAGCTAATTTTTCAGGAATTTTAGACCAAGCTTCTGATAAACTTTGATTTTCGGCTAACCCGACACTAACTCGTCGATATATTTCTTGCTGGAAGTATCCCTGATCATATATATTTGTACGTTATTAGACAAAATATATTAGCTAACCAAAGAAATTTTTAATGGGTGTAGTTCCTATTAAGAAATTTCATTAAGGGCCTCTTGAATCAAAATAATTTGTTTTACAGTTCTATTTCTTTCAGAGGGCAATATGAATATTCTATTATGTTCTATCAACACACAAAAAGGGTTATACGATATATCTGGTGTGGAAGTCGGCCAACATTTGTATTGGCAAATAGGAGGTTTCCAAGTACATGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTTCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCGACGATGAAGCTTATCCCCCATCGTCTCACTGGCCGACCTTGACCCCTCTTATTTTGAGATCATATCTAGTATTCAGAGTTTGCCTGGACACAGTGGGGAAGATAGTTTTGAGAAGGAGAAACGGCATGAGAAAGATGCGGTGGAGTTCGTCTCGGAATCAAGAAACCGAATAGGGTAGACATAAAAAGCTCTGCCCACGCCTGAAACAGAGGAAGAAGAAGAAGAGAGGCAGCTGACTTCTCGAAAAGAAAAAGGAGGATATGAAATAACCATAGTGGATGCAGCGAATGGGCGTCAAGTGGTTGATATTATCCCTCCAGGACCAGAACTTCTTGTTTCAGAGGGCGAATCTATCAAACTTGATCAACCATTAACGAGTAATCCTAATGTGGGAGGATTTGGTCAGGGTTCGAAACAAAAATCGAATGGACTTCTTCGCCTTCCTTCATGTCGTAGCCTTAGCTTATCGACGGGTCTTGCATTAGATACATACAGCATTTTCTTTGACTCATGCCTTGGAGAAGAACGTTCTTTGTTTGAGTTTGAAGTCGTTACCTTGCGGGAGCCACCTGGGCGAGACCCTTCTCTCCTTTTTTGA

mRNA sequence

ATGCCATGGGAAGGTTACAATTCTGAAGATGCGGTACTAATTAGCGAGCGTCTGGTATATGAAGATATTTATACTTCTTTCCACATACGAAAATATGAAATTCAAACTCATGTGACAAGCCACGGACCTGAAAGAATCACTAACGAAATACCACATTTAGAAGCCCGCTTACTCCATAATTTAGACAAAAATGGAATTGTGATGCTGGGATCGTGGGTGGAGACGGGCGAGATTTTAGTAGGTAAATTAACGCCTCAGATGGCGAAAGAATCATCGTATGCCCCGGAAGATAGATTATTACGAGCCATACTTGGCATTCAGGTATCCACTTCAAAAGAAACCTGTCTAAAACTACCTATAGGCGGTAGGGGTCGAGTTATTGATGTGAGATGGATCCAGAAAAAAGGGGGTTCGAGTTATAATCCAGAAATGATTCGTGTATATATTTCACAGAAACGTGAAATCAAAGTAGGCGATAAGGTAGCAGGAAGACATGGAAATAAAGAGGAAGAAGAAGAAGAGAGGCAGCTGACTTCTCGAAAAGAAAAAGGAGGATATGAAATAACCATAGTGGATGCAGCGAATGGGCGTCAAGTGGTTGATATTATCCCTCCAGGACCAGAACTTCTTGTTTCAGAGGGCGAATCTATCAAACTTGATCAACCATTAACGAGTAATCCTAATGTGGGAGGATTTGGTCAGGGTTCGAAACAAAAATCGAATGGACTTCTTCGCCTTCCTTCATGTCGTAGCCTTAGCTTATCGACGGGTCTTGCATTAGATACATACAGCATTTTCTTTGACTCATGCCTTGGAGAAGAACGTTCTTTGTTTGAGTTTGAAGTCGTTACCTTGCGGGAGCCACCTGGGCGAGACCCTTCTCTCCTTTTTTGA

Coding sequence (CDS)

ATGCCATGGGAAGGTTACAATTCTGAAGATGCGGTACTAATTAGCGAGCGTCTGGTATATGAAGATATTTATACTTCTTTCCACATACGAAAATATGAAATTCAAACTCATGTGACAAGCCACGGACCTGAAAGAATCACTAACGAAATACCACATTTAGAAGCCCGCTTACTCCATAATTTAGACAAAAATGGAATTGTGATGCTGGGATCGTGGGTGGAGACGGGCGAGATTTTAGTAGGTAAATTAACGCCTCAGATGGCGAAAGAATCATCGTATGCCCCGGAAGATAGATTATTACGAGCCATACTTGGCATTCAGGTATCCACTTCAAAAGAAACCTGTCTAAAACTACCTATAGGCGGTAGGGGTCGAGTTATTGATGTGAGATGGATCCAGAAAAAAGGGGGTTCGAGTTATAATCCAGAAATGATTCGTGTATATATTTCACAGAAACGTGAAATCAAAGTAGGCGATAAGGTAGCAGGAAGACATGGAAATAAAGAGGAAGAAGAAGAAGAGAGGCAGCTGACTTCTCGAAAAGAAAAAGGAGGATATGAAATAACCATAGTGGATGCAGCGAATGGGCGTCAAGTGGTTGATATTATCCCTCCAGGACCAGAACTTCTTGTTTCAGAGGGCGAATCTATCAAACTTGATCAACCATTAACGAGTAATCCTAATGTGGGAGGATTTGGTCAGGGTTCGAAACAAAAATCGAATGGACTTCTTCGCCTTCCTTCATGTCGTAGCCTTAGCTTATCGACGGGTCTTGCATTAGATACATACAGCATTTTCTTTGACTCATGCCTTGGAGAAGAACGTTCTTTGTTTGAGTTTGAAGTCGTTACCTTGCGGGAGCCACCTGGGCGAGACCCTTCTCTCCTTTTTTGA

Protein sequence

MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLHNLDKNGIVMLGSWVETGEILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNKEEEEEERQLTSRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGSKQKSNGLLRLPSCRSLSLSTGLALDTYSIFFDSCLGEERSLFEFEVVTLREPPGRDPSLLF

Homology

[Close]

BLAST of CmUC11G211420 vs. NCBI nr
Match: AHM89856.1 (RNA polymerase beta subunit [Lagenaria siceraria])

HSP 1 Score: 340.1 bits (871), Expect = 1.9e-89
Identity = 166/168 (98.81%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLHN 60
           MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLL N
Sbjct: 660 MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 719

Query: 61  LDKNGIVMLGSWVETGEILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 120
           LDKNGIVMLGSWVETG+ILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI
Sbjct: 720 LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 779

Query: 121 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 169
           GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK
Sbjct: 780 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 827

[Close]

BLAST of CmUC11G211420 vs. NCBI nr
Match: YP_009753166.1 (RNA polymerase subunit beta [Trichosanthes truncata] >QIT06238.1 RNA polymerase subunit beta [Trichosanthes truncata])

HSP 1 Score: 340.1 bits (871), Expect = 1.9e-89
Identity = 166/168 (98.81%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLHN 60
           MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLL N
Sbjct: 660 MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 719

Query: 61  LDKNGIVMLGSWVETGEILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 120
           LDKNGIVMLGSWVETG+ILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI
Sbjct: 720 LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 779

Query: 121 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 169
           GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK
Sbjct: 780 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 827

[Close]

BLAST of CmUC11G211420 vs. NCBI nr
Match: YP_009752827.1 (RNA polymerase subunit beta [Baijiania yunnanensis] >QIT05899.1 RNA polymerase subunit beta [Baijiania yunnanensis])

HSP 1 Score: 340.1 bits (871), Expect = 1.9e-89
Identity = 166/168 (98.81%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLHN 60
           MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLL N
Sbjct: 660 MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 719

Query: 61  LDKNGIVMLGSWVETGEILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 120
           LDKNGIVMLGSWVETG+ILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI
Sbjct: 720 LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 779

Query: 121 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 169
           GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK
Sbjct: 780 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 827

[Close]

BLAST of CmUC11G211420 vs. NCBI nr
Match: AHM88854.1 (RNA polymerase beta subunit, partial [Lagenaria siceraria])

HSP 1 Score: 340.1 bits (871), Expect = 1.9e-89
Identity = 166/168 (98.81%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLHN 60
           MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLL N
Sbjct: 648 MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 707

Query: 61  LDKNGIVMLGSWVETGEILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 120
           LDKNGIVMLGSWVETG+ILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI
Sbjct: 708 LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 767

Query: 121 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 169
           GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK
Sbjct: 768 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 815

[Close]

BLAST of CmUC11G211420 vs. NCBI nr
Match: YP_009753697.1 (RNA polymerase subunit beta [Trichosanthes nervifolia] >QIT05308.1 RNA polymerase subunit beta [Trichosanthes nervifolia])

HSP 1 Score: 340.1 bits (871), Expect = 1.9e-89
Identity = 166/168 (98.81%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLHN 60
           MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLL N
Sbjct: 660 MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 719

Query: 61  LDKNGIVMLGSWVETGEILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 120
           LDKNGIVMLGSWVETG+ILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI
Sbjct: 720 LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 779

Query: 121 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 169
           GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK
Sbjct: 780 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 827

[Close]

BLAST of CmUC11G211420 vs. ExPASy Swiss-Prot
Match: Q4VZP1 (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3 SV=2)

HSP 1 Score: 334.7 bits (857), Expect = 1.0e-90
Identity = 163/168 (97.02%), Postives = 166/168 (98.81%), Query Frame = 0


Query: 1   MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLHN 60
           MPWEGYN EDAVLISERL+YEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLL N
Sbjct: 660 MPWEGYNFEDAVLISERLIYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLCN 719

Query: 61  LDKNGIVMLGSWVETGEILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 120
           LDKNGIVMLGSWVETG+ILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI
Sbjct: 720 LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 779

Query: 121 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 169
           GGRGRVIDVRWIQKKGGSSYNPE+IRVYISQKREIKVGDKVAGRHGNK
Sbjct: 780 GGRGRVIDVRWIQKKGGSSYNPEIIRVYISQKREIKVGDKVAGRHGNK 827

[Close]

BLAST of CmUC11G211420 vs. ExPASy Swiss-Prot
Match: Q09X25 (DNA-directed RNA polymerase subunit beta OS=Morus indica OX=248361 GN=rpoB PE=3 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 2.6e-89
Identity = 160/168 (95.24%), Postives = 163/168 (97.02%), Query Frame = 0


Query: 1   MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLHN 60
           MPWEGYNSEDAVLI+ERLVYEDIYTSFHIRKYEI THVTSHGPERITNEIPHLEA LL N
Sbjct: 660 MPWEGYNSEDAVLINERLVYEDIYTSFHIRKYEIHTHVTSHGPERITNEIPHLEAHLLRN 719

Query: 61  LDKNGIVMLGSWVETGEILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 120
           LDKNGIVMLGSWVETG+ILVGKLTPQMAKESSYAPEDRLLRAILGIQ+S SKETCLKLPI
Sbjct: 720 LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQISISKETCLKLPI 779

Query: 121 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 169
           GGRGRVIDVRWIQKKGGSSYNPE IRVYISQKREIKVGDKVAGRHGNK
Sbjct: 780 GGRGRVIDVRWIQKKGGSSYNPETIRVYISQKREIKVGDKVAGRHGNK 827

[Close]

BLAST of CmUC11G211420 vs. ExPASy Swiss-Prot
Match: A0A327 (DNA-directed RNA polymerase subunit beta OS=Coffea arabica OX=13443 GN=rpoB PE=3 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 5.7e-89
Identity = 160/168 (95.24%), Postives = 163/168 (97.02%), Query Frame = 0


Query: 1   MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLHN 60
           MPWEGYN EDAVLISERLVYEDIYTSFHIRKYEIQTHVTS GPER+TNEIPHLEA LL N
Sbjct: 656 MPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSQGPERVTNEIPHLEAHLLRN 715

Query: 61  LDKNGIVMLGSWVETGEILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 120
           LDK+GIVMLGSWVETG+ILVGKLTPQM KESSYAPEDRLLRAILGIQVSTSKETCLKLPI
Sbjct: 716 LDKSGIVMLGSWVETGDILVGKLTPQMVKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 775

Query: 121 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 169
           GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK
Sbjct: 776 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 823

[Close]

BLAST of CmUC11G211420 vs. ExPASy Swiss-Prot
Match: A0ZZ27 (DNA-directed RNA polymerase subunit beta OS=Gossypium barbadense OX=3634 GN=rpoB PE=3 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 7.5e-89
Identity = 160/168 (95.24%), Postives = 163/168 (97.02%), Query Frame = 0


Query: 1   MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLHN 60
           MPWEGYN EDAVLISERLVYEDIYTSFHIRKYEIQTHVTS GPERITNEIPHLEA LL N
Sbjct: 660 MPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRN 719

Query: 61  LDKNGIVMLGSWVETGEILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 120
           LDKNGIVMLGSWVETG+ILVGKLTPQ+AKESSYAPEDRLLRAILGIQVSTSKETCLKLPI
Sbjct: 720 LDKNGIVMLGSWVETGDILVGKLTPQVAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 779

Query: 121 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 169
           GGRGRVIDVRW+QKKGGSSYNPE IRVYISQKREIKVGDKVAGRHGNK
Sbjct: 780 GGRGRVIDVRWVQKKGGSSYNPETIRVYISQKREIKVGDKVAGRHGNK 827

[Close]

BLAST of CmUC11G211420 vs. ExPASy Swiss-Prot
Match: Q2L8Z9 (DNA-directed RNA polymerase subunit beta OS=Gossypium hirsutum OX=3635 GN=rpoB PE=3 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 7.5e-89
Identity = 160/168 (95.24%), Postives = 163/168 (97.02%), Query Frame = 0


Query: 1   MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLHN 60
           MPWEGYN EDAVLISERLVYEDIYTSFHIRKYEIQTHVTS GPERITNEIPHLEA LL N
Sbjct: 660 MPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRN 719

Query: 61  LDKNGIVMLGSWVETGEILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 120
           LDKNGIVMLGSWVETG+ILVGKLTPQ+AKESSYAPEDRLLRAILGIQVSTSKETCLKLPI
Sbjct: 720 LDKNGIVMLGSWVETGDILVGKLTPQVAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 779

Query: 121 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 169
           GGRGRVIDVRW+QKKGGSSYNPE IRVYISQKREIKVGDKVAGRHGNK
Sbjct: 780 GGRGRVIDVRWVQKKGGSSYNPETIRVYISQKREIKVGDKVAGRHGNK 827

[Close]

BLAST of CmUC11G211420 vs. ExPASy TrEMBL
Match: A0A6H0ETN6 (DNA-directed RNA polymerase subunit beta OS=Trichosanthes kirilowii OX=3677 GN=rpoB PE=3 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 9.2e-90
Identity = 166/168 (98.81%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLHN 60
           MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLL N
Sbjct: 660 MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 719

Query: 61  LDKNGIVMLGSWVETGEILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 120
           LDKNGIVMLGSWVETG+ILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI
Sbjct: 720 LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 779

Query: 121 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 169
           GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK
Sbjct: 780 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 827

[Close]

BLAST of CmUC11G211420 vs. ExPASy TrEMBL
Match: A0A1P8LDX8 (DNA-directed RNA polymerase subunit beta OS=Citrullus mucosospermus OX=519315 GN=rpoB PE=3 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 9.2e-90
Identity = 166/168 (98.81%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLHN 60
           MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLL N
Sbjct: 660 MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 719

Query: 61  LDKNGIVMLGSWVETGEILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 120
           LDKNGIVMLGSWVETG+ILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI
Sbjct: 720 LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 779

Query: 121 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 169
           GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK
Sbjct: 780 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 827

[Close]

BLAST of CmUC11G211420 vs. ExPASy TrEMBL
Match: A0A6M3RVI4 (DNA-directed RNA polymerase subunit beta OS=Trichosanthes kirilowii var. japonica OX=61011 GN=rpoB PE=3 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 9.2e-90
Identity = 166/168 (98.81%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLHN 60
           MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLL N
Sbjct: 660 MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 719

Query: 61  LDKNGIVMLGSWVETGEILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 120
           LDKNGIVMLGSWVETG+ILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI
Sbjct: 720 LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 779

Query: 121 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 169
           GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK
Sbjct: 780 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 827

[Close]

BLAST of CmUC11G211420 vs. ExPASy TrEMBL
Match: A0A2Z2CGF9 (DNA-directed RNA polymerase subunit beta OS=Coccinia grandis OX=387127 GN=rpoB PE=3 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 9.2e-90
Identity = 166/168 (98.81%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLHN 60
           MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLL N
Sbjct: 660 MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 719

Query: 61  LDKNGIVMLGSWVETGEILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 120
           LDKNGIVMLGSWVETG+ILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI
Sbjct: 720 LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 779

Query: 121 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 169
           GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK
Sbjct: 780 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 827

[Close]

BLAST of CmUC11G211420 vs. ExPASy TrEMBL
Match: X2F5U4 (DNA-directed RNA polymerase subunit beta OS=Lagenaria siceraria OX=3668 GN=rpoB PE=3 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 9.2e-90
Identity = 166/168 (98.81%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLHN 60
           MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLL N
Sbjct: 660 MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 719

Query: 61  LDKNGIVMLGSWVETGEILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 120
           LDKNGIVMLGSWVETG+ILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI
Sbjct: 720 LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 779

Query: 121 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 169
           GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK
Sbjct: 780 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 827

[Close]

BLAST of CmUC11G211420 vs. TAIR 10
Match: ATCG00190.1 (RNA polymerase subunit beta )

HSP 1 Score: 320.5 bits (820), Expect = 1.5e-87
Identity = 156/168 (92.86%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 1   MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLHN 60
           MPWEGYN EDAVLISE LVY DIYTSFHIRKYEIQTHVT+ GPERIT EIPHLE RLL N
Sbjct: 662 MPWEGYNFEDAVLISECLVYGDIYTSFHIRKYEIQTHVTTQGPERITKEIPHLEGRLLRN 721

Query: 61  LDKNGIVMLGSWVETGEILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 120
           LDKNGIVMLGSWVETG+ILVGKLTPQ+AKESSYAPEDRLLRAILGIQVSTSKETCLKLPI
Sbjct: 722 LDKNGIVMLGSWVETGDILVGKLTPQVAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 781

Query: 121 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 169
           GGRGRVIDVRW+QKKGGSSYNPE+IRVYISQKREIKVGDKVAGRHGNK
Sbjct: 782 GGRGRVIDVRWVQKKGGSSYNPEIIRVYISQKREIKVGDKVAGRHGNK 829

[Close]

BLAST of CmUC11G211420 vs. TAIR 10
Match: ATCG00540.1 (photosynthetic electron transfer A )

HSP 1 Score: 105.5 bits (262), Expect = 7.3e-23
Identity = 51/59 (86.44%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 180 RKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGSKQ 239
           RKEKGGYEITIVDA+NGR+V+DIIP G ELLVSEGESIKLDQPLTSNPNVGGFGQG  +
Sbjct: 219 RKEKGGYEITIVDASNGREVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQGDAE 277

The following BLAST results are available for this feature:

BLAST of CmUC11G211420 vs. NCBI nr


Match Name	E-value	Identity	Description
AHM89856.1	1.9e-89	98.81	RNA polymerase beta subunit [Lagenaria siceraria]	[more]
YP_009753166.1	1.9e-89	98.81	RNA polymerase subunit beta [Trichosanthes truncata] >QIT06238.1 RNA polymerase ...	[more]
YP_009752827.1	1.9e-89	98.81	RNA polymerase subunit beta [Baijiania yunnanensis] >QIT05899.1 RNA polymerase s...	[more]
AHM88854.1	1.9e-89	98.81	RNA polymerase beta subunit, partial [Lagenaria siceraria]	[more]
YP_009753697.1	1.9e-89	98.81	RNA polymerase subunit beta [Trichosanthes nervifolia] >QIT05308.1 RNA polymeras...	[more]

BLAST of CmUC11G211420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP1	1.0e-90	97.02	DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3...	[more]
Q09X25	2.6e-89	95.24	DNA-directed RNA polymerase subunit beta OS=Morus indica OX=248361 GN=rpoB PE=3 ...	[more]
A0A327	5.7e-89	95.24	DNA-directed RNA polymerase subunit beta OS=Coffea arabica OX=13443 GN=rpoB PE=3...	[more]
A0ZZ27	7.5e-89	95.24	DNA-directed RNA polymerase subunit beta OS=Gossypium barbadense OX=3634 GN=rpoB...	[more]
Q2L8Z9	7.5e-89	95.24	DNA-directed RNA polymerase subunit beta OS=Gossypium hirsutum OX=3635 GN=rpoB P...	[more]

BLAST of CmUC11G211420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6H0ETN6	9.2e-90	98.81	DNA-directed RNA polymerase subunit beta OS=Trichosanthes kirilowii OX=3677 GN=r...	[more]
A0A1P8LDX8	9.2e-90	98.81	DNA-directed RNA polymerase subunit beta OS=Citrullus mucosospermus OX=519315 GN...	[more]
A0A6M3RVI4	9.2e-90	98.81	DNA-directed RNA polymerase subunit beta OS=Trichosanthes kirilowii var. japonic...	[more]
A0A2Z2CGF9	9.2e-90	98.81	DNA-directed RNA polymerase subunit beta OS=Coccinia grandis OX=387127 GN=rpoB P...	[more]
X2F5U4	9.2e-90	98.81	DNA-directed RNA polymerase subunit beta OS=Lagenaria siceraria OX=3668 GN=rpoB ...	[more]

BLAST of CmUC11G211420 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00190.1	1.5e-87	92.86	RNA polymerase subunit beta	[more]
ATCG00540.1	7.3e-23	86.44	photosynthetic electron transfer A	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002325	Cytochrome f	PRINTS	PR00610	CYTOCHROMEF	coord: 220..240 score: 66.67 coord: 199..219 score: 71.43
IPR002325	Cytochrome f	PFAM	PF01333	Apocytochr_F_C	coord: 179..236 e-value: 4.8E-17 score: 62.1
IPR002325	Cytochrome f	PROSITE	PS51010	CYTF	coord: 180..238 score: 16.918091
None	No IPR available	GENE3D	2.40.50.100		coord: 176..225 e-value: 5.5E-20 score: 73.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..180
None	No IPR available	PANTHER	PTHR20856:SF30	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA	coord: 1..168
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 1..168
IPR014724	RNA polymerase Rpb2, OB-fold	GENE3D	2.40.50.150		coord: 23..166 e-value: 2.1E-48 score: 166.3
IPR007120	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain	PFAM	PF00562	RNA_pol_Rpb2_6	coord: 1..168 e-value: 1.9E-45 score: 155.6
IPR015712	DNA-directed RNA polymerase, subunit 2	PANTHER	PTHR20856	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	coord: 1..168
IPR011054	Rudiment single hybrid motif	SUPERFAMILY	51246	Rudiment single hybrid motif	coord: 180..226

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC11G211420.1	CmUC11G211420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0031361	integral component of thylakoid membrane
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0032549	ribonucleoside binding