CmUC11G211410 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC11G211410
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	DNA-directed RNA polymerase subunit beta''
Location	CmU531Chr11: 7787791 .. 7790371 (+)
RNA-Seq Expression	CmUC11G211410
Synteny	CmUC11G211410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCACTAAATACTTTTCGAGAGATCTCCTCCAAATCACTAGTATGGCTATCGAAATCGTGAGCATCAGCATGAAGGTTCCAGATCCCAGCATTGGAATGGTCTTAGTTTTTGAATATTCAGACAATTAAAAAAAACATTGAGACAGTTATGAATTCCATCGAGTTTCCCTTACTTGATCGAACAACCCAAACTTCCGTTATTTCAACTACATCAAATGATCTTTCAAATTGGTCAAGACTCTCCAGTTTATGGCCGCTTCTCTATGGTACCAGTTGTTGCTTCATTGAATTCGCTTCATTAATAGGTTCACGATTCGACGCTTTAGTCTACGGTCAGATGAATGAACCGCCGGGAGCTCGTATGAGAGTTGGTTTAACTGCCCTAACTATGGCGGAATATTTCCGAGATGTTAATGAACAAGACGTGCTTCTATTTATCGACAATATCTTCCGTTTCGTTCAAGGCCGAGTAGGCGGATTGGTCCGAGTGGAGAAAAAAAAAAGGATTGAACTCAAAATATTTTCTGGAGATATACATTTTCCTCGAGAGATGGATAAGATATCCCGACACAATGGCATCTTGATACCACCTGAAAGAGTAAAAAAAAATTCTAAGAAATCAAAAAAATTGAAAAATTGGATTTATGTCCAGTGGATCACACCTACCAAGAAAAAGTATTTTGTTTTTGTTCGACCTGTAATCATATATGAACTAACCGACGGTATAAATTTAGTAACACTTTTCCCACAGGATCTATTACAAGAAAGGGATAATCTGGAGCTTAGAGTTGTCAATTATATCCTTTATGGAAATGGCAAACCAATTCGAGGAATTTCTGGCACAAGCATTCAATTAGTTCGGACTTGTTTATTGTTGAATTGGGACCGAGACAAAAAAAGCTCTTCTCTCAAAGAAGCGCGCGCTTCCTTTGTTGAAGTAACTACAAATGGTCTGGTTCGAAATTTCCTACGAATAGACTTAGTGAAATCCGATACTTCGTATATCAGAAAAAGGAAAGAGCCGTCAGGTTCAGGATTGATCTTTAATAATGAGTCAGATCGCACCAATATCAATCCATTTTTTTCTATTTATTCCAAGACAAGGGTTCGCTTAATCATAATAATTATCTCGATATATGATACCAAAAACCAGCCTTATGACTGATAAGGTAAGGGGTTTCAAAAGAAAAAACAAAATGACAATTCTACGTGTGATAGAAAAAAATGGAGATCTTCTTTTTTTTTTCAGTGTGCGCGCAGTGGAAGCACCTAAAGGTGAATTTGGTGTCTTTCTGGTCAGTAATGGAAGCAATCGTTCTTACCGTCGTAAAATAAGAGCACCTGGCTCTGCCCATTCACAAACCTCCACGCTCTTTAGCACAAGATTTTGAGTCTCGCGTGTCTACCATTTCACCACCAAGGCATCTTGAAAGTGAATCATATTCCATGAATATGATATCTATCTAGTGTGATGTATGGAATATATGACAAAGGTGGAGTTTTAGAGTATTTCTATTGCTCGGTTTTTTTATTAGTTTTTAAGTAGAATGTTCATTATGATGAGTTGTAGTCGATTAGGAGAACAGCTATGTCACTACAGGGTTTACTCTTCCTCATGTGTCATTATTCATATTTTATGTCCTGGGACATAGATATTCGAGATATTCATAATATGATTCCCTATAGATACCTACATCCATATAGATATATTGATTTTATATCGCAAACATTCGTCGCCCGATCTGTTATATATTTTCAATTTTTAAAGACTTATAATTTATTTCCTCAGATATGATGTTTACGCATGTATAATCGCTTTTTCGAATTCCTTTTCACCGGGTGTGAATCATGATAAAGGGAAAAATCCCAGAATTTGGTGGAAAAACCGCCAATGCCTTGCGTTTTCTTCCAAAAATCCTCAACTTTCATTTATCCGCATACTCGTTCATCCATTCTTAAGCTTGATCGGTGTCATAACCTGGGACCTTGCAAACACCCACTCCTCGCCCGTCGCGCGTGGTCGTCGCGTGAAGGTCTTTGTTTTTATGTGCTGCTATTTCTTTCTCGCTTGCTTATCTCTTTGCCTTTCGGTCTCCGCAAAGTCGTAAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAAGGAAGTTGGTGACCTGATGACAGGGGAGCCGGCGACCGAAGCCCCGATGAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGCGAAGTCTCTTATTCTTAATAAAATCAGACTTTCCTCCTTTCTAAGCAAGAGAAGGGCTTTCTGGCTAATGATATAGATGAATCACTTGAATCAGTTGACTGCTTTCTTACGAATGCTTTCTGACTGTGGGATGATAAGAAAACCCAACAAGGGGTAGTACAGGAATATTCACCTGTTGTCCATCGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCGGAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCGACATTCTCGCACGTAATTCGTTAA

mRNA sequence

ATGGGCACTAAATACTTTTCGAGAGATCTCCTCCAAATCACTAGTATGGCTATCGAAATCGTGAGCATCAGCATGAAGGTTCCAGATCCCAGCATTGGAATGATGAATGAACCGCCGGGAGCTCGTATGAGAGTTGGTTTAACTGCCCTAACTATGGCGGAATATTTCCGAGATGTTAATGAACAAGACGTGCTTCTATTTATCGACAATATCTTCCGTTTCGTTCAAGGCCGAGTAGGCGGATTGTGGATCACACCTACCAAGAAAAAGTATTTTGTTTTTGTTCGACCTGTAATCATATATGAACTAACCGACGGTATAAATTTAGTAACACTTTTCCCACAGGATCTATTACAAGAAAGGGATAATCTGGAGCTTAGAGTTGTCAATTATATCCTTTATGGAAATGGCAAACCAATTCGAGGAATTTCTGGCACAAGCATTCAATTAGTTCGGACTTGTTTATTGTTGAATTGGGACCGAGACAAAAAAAGCTCTTCTCTCAAAGAAGCGCGCGCTTCCTTTGTTGAAGTAACTACAAATGGTCTGGTTCGAAATTTCCTACGAATAGACTTAGTGAAATCCGATACTTCGTATATCAGAAAAAGGAAAGAGCCGTCAGGTTCAGGATTGATCTTTAATAATGAATATGATGTTTACGCATGTATAATCGCTTTTTCGAATTCCTTTTCACCGGGTGTGAATCATGATAAAGGGAAAAATCCCAGAATTTGGTGGAAAAACCGCCAATGCCTTGCGTTTTCTTCCAAAAATCCTCAACTTTCATTTATCCGCATACTCGTTCATCCATTCTTAAGCTTGATCGGTGTCATAACCTGGGACCTTGCAAACACCCACTCCTCGCCCGTCGCGCGTGGTCGTCGCGTGAAGTGCCGGAAGGTCAAGGAAGTTGGTGACCTGATGACAGGGGAGCCGGCGACCGAAGCCCCGATGAACGGCGGCCGTAACTATAACGGTCCTAAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCGGAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCGACATTCTCGCACGTAATTCGTTAA

Coding sequence (CDS)

ATGGGCACTAAATACTTTTCGAGAGATCTCCTCCAAATCACTAGTATGGCTATCGAAATCGTGAGCATCAGCATGAAGGTTCCAGATCCCAGCATTGGAATGATGAATGAACCGCCGGGAGCTCGTATGAGAGTTGGTTTAACTGCCCTAACTATGGCGGAATATTTCCGAGATGTTAATGAACAAGACGTGCTTCTATTTATCGACAATATCTTCCGTTTCGTTCAAGGCCGAGTAGGCGGATTGTGGATCACACCTACCAAGAAAAAGTATTTTGTTTTTGTTCGACCTGTAATCATATATGAACTAACCGACGGTATAAATTTAGTAACACTTTTCCCACAGGATCTATTACAAGAAAGGGATAATCTGGAGCTTAGAGTTGTCAATTATATCCTTTATGGAAATGGCAAACCAATTCGAGGAATTTCTGGCACAAGCATTCAATTAGTTCGGACTTGTTTATTGTTGAATTGGGACCGAGACAAAAAAAGCTCTTCTCTCAAAGAAGCGCGCGCTTCCTTTGTTGAAGTAACTACAAATGGTCTGGTTCGAAATTTCCTACGAATAGACTTAGTGAAATCCGATACTTCGTATATCAGAAAAAGGAAAGAGCCGTCAGGTTCAGGATTGATCTTTAATAATGAATATGATGTTTACGCATGTATAATCGCTTTTTCGAATTCCTTTTCACCGGGTGTGAATCATGATAAAGGGAAAAATCCCAGAATTTGGTGGAAAAACCGCCAATGCCTTGCGTTTTCTTCCAAAAATCCTCAACTTTCATTTATCCGCATACTCGTTCATCCATTCTTAAGCTTGATCGGTGTCATAACCTGGGACCTTGCAAACACCCACTCCTCGCCCGTCGCGCGTGGTCGTCGCGTGAAGTGCCGGAAGGTCAAGGAAGTTGGTGACCTGATGACAGGGGAGCCGGCGACCGAAGCCCCGATGAACGGCGGCCGTAACTATAACGGTCCTAAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCGGAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCGACATTCTCGCACGTAATTCGTTAA

Protein sequence

MGTKYFSRDLLQITSMAIEIVSISMKVPDPSIGMMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQGRVGGLWITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSLKEARASFVEVTTNGLVRNFLRIDLVKSDTSYIRKRKEPSGSGLIFNNEYDVYACIIAFSNSFSPGVNHDKGKNPRIWWKNRQCLAFSSKNPQLSFIRILVHPFLSLIGVITWDLANTHSSPVARGRRVKCRKVKEVGDLMTGEPATEAPMNGGRNYNGPKALTHPPWTNLAEEPLGFRGIGFSPMFALLKPTFSHVIR

Homology

[Close]

BLAST of CmUC11G211410 vs. NCBI nr
Match: APW82621.1 (RNA polymerase beta'' subunit [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 270.8 bits (691), Expect = 1.7e-68
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 83  WITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRG 142
           WITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRG
Sbjct: 769 WITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRG 828

Query: 143 ISGTSIQLVRTCLLLNWDRDKKSSSLKEARASFVEVTTNGLVRNFLRIDLVKSDTSYIRK 202
           ISGTSIQLVRTCLLLNWDRDKKSSSL+EARASFVEVTTNGLVRNFLRIDLVKSDTSYIRK
Sbjct: 829 ISGTSIQLVRTCLLLNWDRDKKSSSLEEARASFVEVTTNGLVRNFLRIDLVKSDTSYIRK 888

Query: 203 RKEPSGSGLIFNNEYD 219
           RKEPSGSGLIFNNE D
Sbjct: 889 RKEPSGSGLIFNNESD 904

[Close]

BLAST of CmUC11G211410 vs. NCBI nr
Match: YP_009431547.1 (RNA polymerase beta'' subunit [Citrullus amarus] >APW82536.1 RNA polymerase beta'' subunit [Citrullus lanatus subsp. vulgaris] >ASY96148.1 RNA polymerase beta'' subunit [Citrullus amarus])

HSP 1 Score: 270.8 bits (691), Expect = 1.7e-68
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 83  WITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRG 142
           WITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRG
Sbjct: 769 WITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRG 828

Query: 143 ISGTSIQLVRTCLLLNWDRDKKSSSLKEARASFVEVTTNGLVRNFLRIDLVKSDTSYIRK 202
           ISGTSIQLVRTCLLLNWDRDKKSSSL+EARASFVEVTTNGLVRNFLRIDLVKSDTSYIRK
Sbjct: 829 ISGTSIQLVRTCLLLNWDRDKKSSSLEEARASFVEVTTNGLVRNFLRIDLVKSDTSYIRK 888

Query: 203 RKEPSGSGLIFNNEYD 219
           RKEPSGSGLIFNNE D
Sbjct: 889 RKEPSGSGLIFNNESD 904

[Close]

BLAST of CmUC11G211410 vs. NCBI nr
Match: APW82451.1 (RNA polymerase beta'' subunit [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 270.8 bits (691), Expect = 1.7e-68
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 83  WITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRG 142
           WITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRG
Sbjct: 769 WITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRG 828

Query: 143 ISGTSIQLVRTCLLLNWDRDKKSSSLKEARASFVEVTTNGLVRNFLRIDLVKSDTSYIRK 202
           ISGTSIQLVRTCLLLNWDRDKKSSSL+EARASFVEVTTNGLVRNFLRIDLVKSDTSYIRK
Sbjct: 829 ISGTSIQLVRTCLLLNWDRDKKSSSLEEARASFVEVTTNGLVRNFLRIDLVKSDTSYIRK 888

Query: 203 RKEPSGSGLIFNNEYD 219
           RKEPSGSGLIFNNE D
Sbjct: 889 RKEPSGSGLIFNNESD 904

[Close]

BLAST of CmUC11G211410 vs. NCBI nr
Match: QZL38671.1 (RNA polymerase beta'' subunit [Citrullus ecirrhosus])

HSP 1 Score: 270.8 bits (691), Expect = 1.7e-68
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 83  WITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRG 142
           WITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRG
Sbjct: 765 WITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRG 824

Query: 143 ISGTSIQLVRTCLLLNWDRDKKSSSLKEARASFVEVTTNGLVRNFLRIDLVKSDTSYIRK 202
           ISGTSIQLVRTCLLLNWDRDKKSSSL+EARASFVEVTTNGLVRNFLRIDLVKSDTSYIRK
Sbjct: 825 ISGTSIQLVRTCLLLNWDRDKKSSSLEEARASFVEVTTNGLVRNFLRIDLVKSDTSYIRK 884

Query: 203 RKEPSGSGLIFNNEYD 219
           RKEPSGSGLIFNNE D
Sbjct: 885 RKEPSGSGLIFNNESD 900

[Close]

BLAST of CmUC11G211410 vs. NCBI nr
Match: YP_009325979.1 (RNA polymerase beta'' subunit [Citrullus lanatus] >YP_009348021.1 RNA polymerase beta'' subunit [Citrullus mucosospermus] >APW82876.1 RNA polymerase beta'' subunit [Citrullus lanatus subsp. vulgaris] >APD52470.1 RNA polymerase beta'' subunit [Citrullus lanatus] >APW82706.1 RNA polymerase beta'' subunit [Citrullus mucosospermus] >APW82791.1 RNA polymerase beta'' subunit [Citrullus mucosospermus] >APW82961.1 RNA polymerase beta'' subunit [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 270.8 bits (691), Expect = 1.7e-68
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 83  WITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRG 142
           WITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRG
Sbjct: 769 WITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRG 828

Query: 143 ISGTSIQLVRTCLLLNWDRDKKSSSLKEARASFVEVTTNGLVRNFLRIDLVKSDTSYIRK 202
           ISGTSIQLVRTCLLLNWDRDKKSSSL+EARASFVEVTTNGLVRNFLRIDLVKSDTSYIRK
Sbjct: 829 ISGTSIQLVRTCLLLNWDRDKKSSSLEEARASFVEVTTNGLVRNFLRIDLVKSDTSYIRK 888

Query: 203 RKEPSGSGLIFNNEYD 219
           RKEPSGSGLIFNNE D
Sbjct: 889 RKEPSGSGLIFNNESD 904

[Close]

BLAST of CmUC11G211410 vs. ExPASy Swiss-Prot
Match: Q4VZP3 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 4.5e-67
Identity = 125/136 (91.91%), Postives = 131/136 (96.32%), Query Frame = 0


Query: 83  WITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRG 142
           WITPTKKKYFVFVRPVIIYEL DGINLV LFPQDLLQERDNLELRV NYILYGNGKPIRG
Sbjct: 769 WITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQERDNLELRVANYILYGNGKPIRG 828

Query: 143 ISGTSIQLVRTCLLLNWDRDKKSSSLKEARASFVEVTTNGLVRNFLRIDLVKSDTSYIRK 202
           ISGTSIQLVRTCLLLNWDRDKKSSS+++ARASFVEV+TNGLVRNFLRIDL KSDT+YIRK
Sbjct: 829 ISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYIRK 888

Query: 203 RKEPSGSGLIFNNEYD 219
           RK+PSGSGLIFNNE D
Sbjct: 889 RKDPSGSGLIFNNESD 904

[Close]

BLAST of CmUC11G211410 vs. ExPASy Swiss-Prot
Match: Q3C1G9 (DNA-directed RNA polymerase subunit beta'' OS=Nicotiana sylvestris OX=4096 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 7.9e-56
Identity = 108/174 (62.07%), Postives = 137/174 (78.74%), Query Frame = 0


Query: 84  ITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGI 143
           ITP+KKK+FV VRPV+ YE+TDGINL TLFP D LQERDN++LR+VNYILYGNGKPIRGI
Sbjct: 768 ITPSKKKFFVLVRPVVTYEITDGINLATLFPPDPLQERDNVQLRIVNYILYGNGKPIRGI 827

Query: 144 SGTSIQLVRTCLLLNWDRDKKSSSLKEARASFVEVTTNGLVRNFLRIDLVKSDTSYIRKR 203
           S TSIQLVRTCL+LNW++DKKSSS +EARASFVE+ TNGL+R+FLRI+LVKS  SYI KR
Sbjct: 828 SDTSIQLVRTCLVLNWNQDKKSSSCEEARASFVEIRTNGLIRHFLRINLVKSPISYIGKR 887

Query: 204 KEPSGSGLIFNNEYDV-----YACIIAFSNS-FSPGVNHDKGKNPRIWWKNRQC 252
            +PSGSGL+ +N  D      ++ I ++S +     +N  +G    +  +N++C
Sbjct: 888 NDPSGSGLLSDNGSDCTNINPFSSIYSYSKAKIQQSINQPQGTIHTLLNRNKEC 941

[Close]

BLAST of CmUC11G211410 vs. ExPASy Swiss-Prot
Match: P38550 (DNA-directed RNA polymerase subunit beta'' OS=Nicotiana tabacum OX=4097 GN=rpoC2 PE=3 SV=2)

HSP 1 Score: 219.2 bits (557), Expect = 7.9e-56
Identity = 108/174 (62.07%), Postives = 137/174 (78.74%), Query Frame = 0


Query: 84  ITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGI 143
           ITP+KKK+FV VRPV+ YE+TDGINL TLFP D LQERDN++LR+VNYILYGNGKPIRGI
Sbjct: 768 ITPSKKKFFVLVRPVVTYEITDGINLATLFPPDPLQERDNVQLRIVNYILYGNGKPIRGI 827

Query: 144 SGTSIQLVRTCLLLNWDRDKKSSSLKEARASFVEVTTNGLVRNFLRIDLVKSDTSYIRKR 203
           S TSIQLVRTCL+LNW++DKKSSS +EARASFVE+ TNGL+R+FLRI+LVKS  SYI KR
Sbjct: 828 SDTSIQLVRTCLVLNWNQDKKSSSCEEARASFVEIRTNGLIRHFLRINLVKSPISYIGKR 887

Query: 204 KEPSGSGLIFNNEYDV-----YACIIAFSNS-FSPGVNHDKGKNPRIWWKNRQC 252
            +PSGSGL+ +N  D      ++ I ++S +     +N  +G    +  +N++C
Sbjct: 888 NDPSGSGLLSDNGSDCTNINPFSSIYSYSKAKIQQSINQPQGTIHTLLNRNKEC 941

[Close]

BLAST of CmUC11G211410 vs. ExPASy Swiss-Prot
Match: Q33C48 (DNA-directed RNA polymerase subunit beta'' OS=Nicotiana tomentosiformis OX=4098 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.0e-55
Identity = 107/174 (61.49%), Postives = 137/174 (78.74%), Query Frame = 0


Query: 84  ITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGI 143
           ITP+KK++FV VRPV+ YE+TDGINL TLFP D LQERDN++LR+VNYILYGNGKPIRGI
Sbjct: 768 ITPSKKRFFVLVRPVVTYEITDGINLATLFPPDPLQERDNVQLRIVNYILYGNGKPIRGI 827

Query: 144 SGTSIQLVRTCLLLNWDRDKKSSSLKEARASFVEVTTNGLVRNFLRIDLVKSDTSYIRKR 203
           S TSIQLVRTCL+LNW++DKKSSS +EARASFVE+ TNGL+R+FLRI+LVKS  SYI KR
Sbjct: 828 SDTSIQLVRTCLVLNWNQDKKSSSCEEARASFVEIRTNGLIRHFLRINLVKSPISYIGKR 887

Query: 204 KEPSGSGLIFNNEYDV-----YACIIAFSNS-FSPGVNHDKGKNPRIWWKNRQC 252
            +PSGSGL+ +N  D      ++ I ++S +     +N  +G    +  +N++C
Sbjct: 888 NDPSGSGLLSDNGSDCTNINPFSSIYSYSKAKIQQSLNQPQGTIHTLLNRNKEC 941

[Close]

BLAST of CmUC11G211410 vs. ExPASy Swiss-Prot
Match: Q2MIJ7 (DNA-directed RNA polymerase subunit beta'' OS=Solanum bulbocastanum OX=147425 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 5.1e-55
Identity = 107/174 (61.49%), Postives = 137/174 (78.74%), Query Frame = 0


Query: 84  ITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGI 143
           ITP+KK++FV VRPV+ YE+TDGINL TLFP D LQERDN++LR+VNYILYGNGKPIRGI
Sbjct: 768 ITPSKKRFFVLVRPVVTYEITDGINLGTLFPPDPLQERDNVQLRIVNYILYGNGKPIRGI 827

Query: 144 SGTSIQLVRTCLLLNWDRDKKSSSLKEARASFVEVTTNGLVRNFLRIDLVKSDTSYIRKR 203
           S TSIQLVRTCL+LNW++DKKSSS +EARASFVE+ TNGL+R+FLRI+LVKS  SYI KR
Sbjct: 828 SDTSIQLVRTCLVLNWNQDKKSSSCEEARASFVEIRTNGLIRHFLRINLVKSPISYIGKR 887

Query: 204 KEPSGSGLIFNNEYDV-----YACIIAFSNS-FSPGVNHDKGKNPRIWWKNRQC 252
            +PSGSGL+ +N  D      ++ I ++S +     +N  +G    +  +N++C
Sbjct: 888 NDPSGSGLLSDNGSDCTNINPFSAIYSYSKAKIQQSLNQPQGTIHTLLNRNKEC 941

[Close]

BLAST of CmUC11G211410 vs. ExPASy TrEMBL
Match: A0A1P8LFL6 (DNA-directed RNA polymerase OS=Citrullus mucosospermus OX=519315 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 8.5e-69
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 83  WITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRG 142
           WITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRG
Sbjct: 769 WITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRG 828

Query: 143 ISGTSIQLVRTCLLLNWDRDKKSSSLKEARASFVEVTTNGLVRNFLRIDLVKSDTSYIRK 202
           ISGTSIQLVRTCLLLNWDRDKKSSSL+EARASFVEVTTNGLVRNFLRIDLVKSDTSYIRK
Sbjct: 829 ISGTSIQLVRTCLLLNWDRDKKSSSLEEARASFVEVTTNGLVRNFLRIDLVKSDTSYIRK 888

Query: 203 RKEPSGSGLIFNNEYD 219
           RKEPSGSGLIFNNE D
Sbjct: 889 RKEPSGSGLIFNNESD 904

[Close]

BLAST of CmUC11G211410 vs. ExPASy TrEMBL
Match: A0A1P8LF52 (DNA-directed RNA polymerase OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 8.5e-69
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 83  WITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRG 142
           WITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRG
Sbjct: 769 WITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRG 828

Query: 143 ISGTSIQLVRTCLLLNWDRDKKSSSLKEARASFVEVTTNGLVRNFLRIDLVKSDTSYIRK 202
           ISGTSIQLVRTCLLLNWDRDKKSSSL+EARASFVEVTTNGLVRNFLRIDLVKSDTSYIRK
Sbjct: 829 ISGTSIQLVRTCLLLNWDRDKKSSSLEEARASFVEVTTNGLVRNFLRIDLVKSDTSYIRK 888

Query: 203 RKEPSGSGLIFNNEYD 219
           RKEPSGSGLIFNNE D
Sbjct: 889 RKEPSGSGLIFNNESD 904

[Close]

BLAST of CmUC11G211410 vs. ExPASy TrEMBL
Match: A0A343A8A0 (DNA-directed RNA polymerase subunit beta'' OS=Citrullus lanatus OX=3654 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 8.5e-69
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 83  WITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRG 142
           WITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRG
Sbjct: 769 WITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRG 828

Query: 143 ISGTSIQLVRTCLLLNWDRDKKSSSLKEARASFVEVTTNGLVRNFLRIDLVKSDTSYIRK 202
           ISGTSIQLVRTCLLLNWDRDKKSSSL+EARASFVEVTTNGLVRNFLRIDLVKSDTSYIRK
Sbjct: 829 ISGTSIQLVRTCLLLNWDRDKKSSSLEEARASFVEVTTNGLVRNFLRIDLVKSDTSYIRK 888

Query: 203 RKEPSGSGLIFNNEYD 219
           RKEPSGSGLIFNNE D
Sbjct: 889 RKEPSGSGLIFNNESD 904

[Close]

BLAST of CmUC11G211410 vs. ExPASy TrEMBL
Match: A0A249RX35 (DNA-directed RNA polymerase subunit beta'' OS=Citrullus amarus OX=1567104 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 8.5e-69
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 83  WITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRG 142
           WITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRG
Sbjct: 769 WITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRG 828

Query: 143 ISGTSIQLVRTCLLLNWDRDKKSSSLKEARASFVEVTTNGLVRNFLRIDLVKSDTSYIRK 202
           ISGTSIQLVRTCLLLNWDRDKKSSSL+EARASFVEVTTNGLVRNFLRIDLVKSDTSYIRK
Sbjct: 829 ISGTSIQLVRTCLLLNWDRDKKSSSLEEARASFVEVTTNGLVRNFLRIDLVKSDTSYIRK 888

Query: 203 RKEPSGSGLIFNNEYD 219
           RKEPSGSGLIFNNE D
Sbjct: 889 RKEPSGSGLIFNNESD 904

[Close]

BLAST of CmUC11G211410 vs. ExPASy TrEMBL
Match: A0A1P8LDF2 (DNA-directed RNA polymerase OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 8.5e-69
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 83  WITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRG 142
           WITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRG
Sbjct: 769 WITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRG 828

Query: 143 ISGTSIQLVRTCLLLNWDRDKKSSSLKEARASFVEVTTNGLVRNFLRIDLVKSDTSYIRK 202
           ISGTSIQLVRTCLLLNWDRDKKSSSL+EARASFVEVTTNGLVRNFLRIDLVKSDTSYIRK
Sbjct: 829 ISGTSIQLVRTCLLLNWDRDKKSSSLEEARASFVEVTTNGLVRNFLRIDLVKSDTSYIRK 888

Query: 203 RKEPSGSGLIFNNEYD 219
           RKEPSGSGLIFNNE D
Sbjct: 889 RKEPSGSGLIFNNESD 904

[Close]

BLAST of CmUC11G211410 vs. TAIR 10
Match: ATCG00170.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 186.8 bits (473), Expect = 3.1e-47
Identity = 99/178 (55.62%), Postives = 121/178 (67.98%), Query Frame = 0


Query: 84  ITPTKKKYFVFVRPVIIYELTDGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGI 143
           ITPTKKK+FV VRPV  YE+ D INL TLFPQDL +E+DN++LRV NYILYGNGKP RGI
Sbjct: 766 ITPTKKKFFVLVRPVATYEIADSINLATLFPQDLFREKDNIQLRVFNYILYGNGKPTRGI 825

Query: 144 SGTSIQLVRTCLLLNWDRDKKSSSLKEARASFVEVTTNGLVRNFLRIDLVKSDTSYIRKR 203
           S TSIQLVRTCL+LNWD   K+SSL+E RA FVEV+T GL+++F+RI LVKS  SYIRKR
Sbjct: 826 SDTSIQLVRTCLVLNWD---KNSSLEEVRAFFVEVSTKGLIQDFIRIGLVKSHISYIRKR 885

Query: 204 KEPSGSGLIFNNEYDVYACIIAFSNSFSPGVNHDKGKNPRIWWKNRQ---CLAFSSKN 259
                SGLI  +  + +  I   S      +  + G       +N++    L  SS N
Sbjct: 886 NNSPDSGLISADHMNPFYSISPKSGILQQSLRQNHGTIRMFLNRNKESQSLLILSSSN 940

[Close]

BLAST of CmUC11G211410 vs. TAIR 10
Match: ATCG00480.1 (ATP synthase subunit beta )

HSP 1 Score: 89.7 bits (221), Expect = 5.1e-18
Identity = 43/44 (97.73%), Postives = 43/44 (97.73%), Query Frame = 0


Query: 33  GMMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQ 77
           G MNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQ
Sbjct: 237 GQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQ 280

[Close]

BLAST of CmUC11G211410 vs. TAIR 10
Match: AT5G08670.1 (ATP synthase alpha/beta family protein )

HSP 1 Score: 76.3 bits (186), Expect = 5.9e-14
Identity = 36/44 (81.82%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 33  GMMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQ 77
           G MNEPPGAR RVGLT LT+AEYFRD   QDVLLFIDNIFRF Q
Sbjct: 297 GQMNEPPGARARVGLTGLTVAEYFRDAEGQDVLLFIDNIFRFTQ 340

[Close]

BLAST of CmUC11G211410 vs. TAIR 10
Match: AT5G08680.1 (ATP synthase alpha/beta family protein )

HSP 1 Score: 76.3 bits (186), Expect = 5.9e-14
Identity = 36/44 (81.82%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 33  GMMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQ 77
           G MNEPPGAR RVGLT LT+AEYFRD   QDVLLFIDNIFRF Q
Sbjct: 300 GQMNEPPGARARVGLTGLTVAEYFRDAEGQDVLLFIDNIFRFTQ 343

[Close]

BLAST of CmUC11G211410 vs. TAIR 10
Match: AT5G08690.1 (ATP synthase alpha/beta family protein )

HSP 1 Score: 76.3 bits (186), Expect = 5.9e-14
Identity = 36/44 (81.82%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 33  GMMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQ 77
           G MNEPPGAR RVGLT LT+AEYFRD   QDVLLFIDNIFRF Q
Sbjct: 297 GQMNEPPGARARVGLTGLTVAEYFRDAEGQDVLLFIDNIFRFTQ 340

The following BLAST results are available for this feature:

BLAST of CmUC11G211410 vs. NCBI nr


Match Name	E-value	Identity	Description
APW82621.1	1.7e-68	98.53	RNA polymerase beta'' subunit [Citrullus lanatus subsp. vulgaris]	[more]
YP_009431547.1	1.7e-68	98.53	RNA polymerase beta'' subunit [Citrullus amarus] >APW82536.1 RNA polymerase beta...	[more]
APW82451.1	1.7e-68	98.53	RNA polymerase beta'' subunit [Citrullus lanatus subsp. vulgaris]	[more]
QZL38671.1	1.7e-68	98.53	RNA polymerase beta'' subunit [Citrullus ecirrhosus]	[more]
YP_009325979.1	1.7e-68	98.53	RNA polymerase beta'' subunit [Citrullus lanatus] >YP_009348021.1 RNA polymerase...	[more]

BLAST of CmUC11G211410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP3	4.5e-67	91.91	DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 P...	[more]
Q3C1G9	7.9e-56	62.07	DNA-directed RNA polymerase subunit beta'' OS=Nicotiana sylvestris OX=4096 GN=rp...	[more]
P38550	7.9e-56	62.07	DNA-directed RNA polymerase subunit beta'' OS=Nicotiana tabacum OX=4097 GN=rpoC2...	[more]
Q33C48	3.0e-55	61.49	DNA-directed RNA polymerase subunit beta'' OS=Nicotiana tomentosiformis OX=4098 ...	[more]
Q2MIJ7	5.1e-55	61.49	DNA-directed RNA polymerase subunit beta'' OS=Solanum bulbocastanum OX=147425 GN...	[more]

BLAST of CmUC11G211410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1P8LFL6	8.5e-69	98.53	DNA-directed RNA polymerase OS=Citrullus mucosospermus OX=519315 GN=rpoC2 PE=3 S...	[more]
A0A1P8LF52	8.5e-69	98.53	DNA-directed RNA polymerase OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=rp...	[more]
A0A343A8A0	8.5e-69	98.53	DNA-directed RNA polymerase subunit beta'' OS=Citrullus lanatus OX=3654 GN=rpoC2...	[more]
A0A249RX35	8.5e-69	98.53	DNA-directed RNA polymerase subunit beta'' OS=Citrullus amarus OX=1567104 GN=rpo...	[more]
A0A1P8LDF2	8.5e-69	98.53	DNA-directed RNA polymerase OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=rp...	[more]

BLAST of CmUC11G211410 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00170.1	3.1e-47	55.62	DNA-directed RNA polymerase family protein	[more]
ATCG00480.1	5.1e-18	97.73	ATP synthase subunit beta	[more]
AT5G08670.1	5.9e-14	81.82	ATP synthase alpha/beta family protein	[more]
AT5G08680.1	5.9e-14	81.82	ATP synthase alpha/beta family protein	[more]
AT5G08690.1	5.9e-14	81.82	ATP synthase alpha/beta family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000194	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	PFAM	PF00006	ATP-synt_ab	coord: 34..76 e-value: 7.7E-9 score: 35.5
None	No IPR available	GENE3D	3.40.50.12240		coord: 31..78 e-value: 2.0E-15 score: 58.4
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 83..227
None	No IPR available	PANTHER	PTHR19376:SF47	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA''	coord: 83..227
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 33..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC11G211410.1	CmUC11G211410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0008270	zinc ion binding