CmUC11G211370 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC11G211370
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	50S ribosomal protein L23, chloroplastic
Location	CmU531Chr11: 7771325 .. 7772144 (-)
RNA-Seq Expression	CmUC11G211370
Synteny	CmUC11G211370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGCCTTATTTCTAATTGAGAAGGGCTTCAATAAAAAGAAGATCGTGGGATCAAAGTGGACGTTCAAAATTTCCATGGCCGATTGCATCCCGAGGACTTTCTTGATTGAAAAAGTAGCGTGGCAAGGAAATGATTCAGTTCCAAAGCCAAAGATCGTAATTCTCGAACGAGCAATCGAAAAGATTCTAGAGTATCCTCAGGTTTCGGTATTGTTCCTCCAATGATTGTAGTACCAAGTACTTCTTGCCGAGCTCTAATATGATCAGATTTATAAGTAAGCACGGGCTCTTGCTGATACTACATCAGAGATTATTTTGTTGGGATGGTTACAACAAGATATGGGAGTCACTTTTTCTGGGCCTACTATTCTCATTTGTGACAACAAGAGTGCTATCCAAATAGCACACAATGATGTGTTTCATGAGCGAACAAAACATATCGAAATAGCCAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCTTGGGAAAGGGTAGAAGAATGGGACCTATTATAGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAAATCAAAATACTTAATAGCATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAATCAAGTAAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGAGAGGGGGTACATGTCAAGTATCCGCTTGGGATCATGTCTTCTTAG

mRNA sequence

ATGTGGGCCTTATTTCTAATTGAGAAGGGCTTCAATAAAAAGAAGATCGTGGGATCAAAGTGGACGTTCAAAATTTCCATGGCCGATTGCATCCCGAGGACTTTCTTGATTGAAAAAGTAGCGTGGCAAGGAAATGATTCAGTTCCAAAGCCAAAGATCGTAATTCTCGAACGAGCAATCGAAAAGATTCTAGAGTATCCTCAGGTTTCGGTAATAGCTATGAATAGTCATCGACTCTTGGGAAAGGGTAGAAGAATGGGACCTATTATAGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCGGCCGTAGACAATCAAGTAAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGAGAGGGGGTACATGTCAAGTATCCGCTTGGGATCATGTCTTCTTAG

Coding sequence (CDS)

ATGTGGGCCTTATTTCTAATTGAGAAGGGCTTCAATAAAAAGAAGATCGTGGGATCAAAGTGGACGTTCAAAATTTCCATGGCCGATTGCATCCCGAGGACTTTCTTGATTGAAAAAGTAGCGTGGCAAGGAAATGATTCAGTTCCAAAGCCAAAGATCGTAATTCTCGAACGAGCAATCGAAAAGATTCTAGAGTATCCTCAGGTTTCGGTAATAGCTATGAATAGTCATCGACTCTTGGGAAAGGGTAGAAGAATGGGACCTATTATAGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCGGCCGTAGACAATCAAGTAAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGAGAGGGGGTACATGTCAAGTATCCGCTTGGGATCATGTCTTCTTAG

Protein sequence

MWALFLIEKGFNKKKIVGSKWTFKISMADCIPRTFLIEKVAWQGNDSVPKPKIVILERAIEKILEYPQVSVIAMNSHRLLGKGRRMGPIIGHTMHYRRMIITLQPAVDNQVKSNPRNNLIYGQHRCGKGREGVHVKYPLGIMSS

Homology

[Close]

BLAST of CmUC11G211370 vs. NCBI nr
Match: KAF3946242.1 (hypothetical protein CMV_027466 [Castanea mollissima])

HSP 1 Score: 120.2 bits (300), Expect = 1.5e-23
Identity = 56/62 (90.32%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 69  VSVIAMNSHRLLGKGRRMGPIIGHTMHYRRMIITLQPAVDNQVKSNPRNNLIYGQHRCGK 128
           V VIAMNSHRL GKGRRMGPI+GHTMHYRRMIITLQPAVD+QVKSNPRNNLIYGQH C K
Sbjct: 45  VKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHHCSK 104

Query: 129 GR 131
           GR
Sbjct: 105 GR 106

[Close]

BLAST of CmUC11G211370 vs. NCBI nr
Match: TYI09250.1 (hypothetical protein ES332_A09G058600v1 [Gossypium tomentosum])

HSP 1 Score: 118.2 bits (295), Expect = 5.7e-23
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 74  MNSHRLLGKGRRMGPIIGHTMHYRRMIITLQPAVDNQVKSNPRNNLIYGQHRCGKGR 131
           MNSHRL GKGRRMGPI+GHTMHYRRMIITLQPAVD+QVKSNPRNNLIYGQHRCGKGR
Sbjct: 1   MNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR 57

[Close]

BLAST of CmUC11G211370 vs. NCBI nr
Match: TYI09266.1 (hypothetical protein ES332_A09G060200v1 [Gossypium tomentosum])

HSP 1 Score: 118.2 bits (295), Expect = 5.7e-23
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 74  MNSHRLLGKGRRMGPIIGHTMHYRRMIITLQPAVDNQVKSNPRNNLIYGQHRCGKGR 131
           MNSHRL GKGRRMGPI+GHTMHYRRMIITLQPAVD+QVKSNPRNNLIYGQHRCGKGR
Sbjct: 1   MNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR 57

[Close]

BLAST of CmUC11G211370 vs. NCBI nr
Match: KAG5606025.1 (hypothetical protein H5410_027517 [Solanum commersonii])

HSP 1 Score: 110.5 bits (275), Expect = 1.2e-20
Identity = 54/62 (87.10%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 69  VSVIAMNSHRLLGKGRRMGPIIGHTMHYRRMIITLQPAVDNQVKSNPRNNLIYGQHRCGK 128
           V VIAMNSHRL GK RRMGPI+GHTMHYRRMIITLQP  D+QVKSNPRNNLIYGQ RCGK
Sbjct: 45  VKVIAMNSHRLPGKSRRMGPIMGHTMHYRRMIITLQP--DSQVKSNPRNNLIYGQRRCGK 104

Query: 129 GR 131
           GR
Sbjct: 105 GR 104

[Close]

BLAST of CmUC11G211370 vs. NCBI nr
Match: KAG4119256.1 (hypothetical protein ERO13_D11G067360v2 [Gossypium hirsutum])

HSP 1 Score: 109.0 bits (271), Expect = 3.5e-20
Identity = 54/70 (77.14%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 74  MNSHRLLGKGRRMGPIIGHTMHYRRMIITLQP-------------AVDNQVKSNPRNNLI 131
           MNSHRL GKGRRMGPI+GHTMHYRRMIITLQP             AVD+QVKSNPRNNLI
Sbjct: 1   MNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRTTRNGAVDSQVKSNPRNNLI 60

[Close]

BLAST of CmUC11G211370 vs. ExPASy Swiss-Prot
Match: Q06GJ6 (50S ribosomal protein L23, chloroplastic OS=Piper cenocladum OX=398741 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.5e-13
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 69  VSVIAMNSHRLLGKGRRMGPIIGHTMHYRRMIITLQP 106
           V VIAMNSHRL GKGRRMGPIIGHTMHYRRMIITLQP
Sbjct: 45  VKVIAMNSHRLQGKGRRMGPIIGHTMHYRRMIITLQP 81

[Close]

BLAST of CmUC11G211370 vs. ExPASy Swiss-Prot
Match: A0A378 (50S ribosomal protein L23, chloroplastic OS=Coffea arabica OX=13443 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.8e-12
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 69  VSVIAMNSHRLLGKGRRMGPIIGHTMHYRRMIITLQP 106
           V VIAMNSHRL GKGRRMGPI+GHTMHYRRMIITLQP
Sbjct: 45  VKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP 81

[Close]

BLAST of CmUC11G211370 vs. ExPASy Swiss-Prot
Match: Q4VZK6 (50S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.8e-12
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 69  VSVIAMNSHRLLGKGRRMGPIIGHTMHYRRMIITLQP 106
           V VIAMNSHRL GKGRRMGPI+GHTMHYRRMIITLQP
Sbjct: 45  VKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP 81

[Close]

BLAST of CmUC11G211370 vs. ExPASy Swiss-Prot
Match: Q06GT3 (50S ribosomal protein L23, chloroplastic OS=Drimys granadensis OX=224735 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.8e-12
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 69  VSVIAMNSHRLLGKGRRMGPIIGHTMHYRRMIITLQP 106
           V VIAMNSHRL GKGRRMGPI+GHTMHYRRMIITLQP
Sbjct: 45  VKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP 81

[Close]

BLAST of CmUC11G211370 vs. ExPASy Swiss-Prot
Match: A0ZZ77 (50S ribosomal protein L23, chloroplastic OS=Gossypium barbadense OX=3634 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.8e-12
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 69  VSVIAMNSHRLLGKGRRMGPIIGHTMHYRRMIITLQP 106
           V VIAMNSHRL GKGRRMGPI+GHTMHYRRMIITLQP
Sbjct: 45  VKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP 81

[Close]

BLAST of CmUC11G211370 vs. ExPASy TrEMBL
Match: A0A5D2P0J4 (50S ribosomal protein L2, chloroplastic OS=Gossypium tomentosum OX=34277 GN=ES332_A09G060200v1 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.8e-23
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 74  MNSHRLLGKGRRMGPIIGHTMHYRRMIITLQPAVDNQVKSNPRNNLIYGQHRCGKGR 131
           MNSHRL GKGRRMGPI+GHTMHYRRMIITLQPAVD+QVKSNPRNNLIYGQHRCGKGR
Sbjct: 1   MNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR 57

[Close]

BLAST of CmUC11G211370 vs. ExPASy TrEMBL
Match: A0A5D2P3Y3 (50S ribosomal protein L2, chloroplastic OS=Gossypium tomentosum OX=34277 GN=ES332_A09G058600v1 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.8e-23
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 74  MNSHRLLGKGRRMGPIIGHTMHYRRMIITLQPAVDNQVKSNPRNNLIYGQHRCGKGR 131
           MNSHRL GKGRRMGPI+GHTMHYRRMIITLQPAVD+QVKSNPRNNLIYGQHRCGKGR
Sbjct: 1   MNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR 57

[Close]

BLAST of CmUC11G211370 vs. ExPASy TrEMBL
Match: A0A5D2D6S0 (50S ribosomal protein L2, chloroplastic OS=Gossypium darwinii OX=34276 GN=ES288_D03G093400v1 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.8e-19
Identity = 52/70 (74.29%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 74  MNSHRLLGKGRRMGPIIGHTMHYRRMIITLQP-------------AVDNQVKSNPRNNLI 131
           MNSHRL GKG R+GPI+GHTMHYRRMIITLQP             AVD+QVKSNPRNNLI
Sbjct: 1   MNSHRLPGKGTRLGPIMGHTMHYRRMIITLQPGYSIPPLRTTRNGAVDSQVKSNPRNNLI 60

[Close]

BLAST of CmUC11G211370 vs. ExPASy TrEMBL
Match: A0A411K5D6 (Ribosomal protein L2 OS=Rhabdodendron amazonicum OX=63102 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 7.0e-19
Identity = 57/97 (58.76%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 69  VSVIAMNSHRLLGKGRRMGPIIGHTMHYRRMIITLQP----------------------- 128
           V VIAMNSHRL GKGRRMGPI+GHTMHYRRMIITLQP                       
Sbjct: 45  VKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRTEIKILNSMAIH 104

Query: 129 ------------AVDNQVKSNPRNNLIYGQHRCGKGR 131
                       AVD+QVKSNPRNNLIYGQ RCGKGR
Sbjct: 105 LYKTSTPSTRNGAVDSQVKSNPRNNLIYGQRRCGKGR 141

[Close]

BLAST of CmUC11G211370 vs. ExPASy TrEMBL
Match: A0A2G9G6U0 (Mitochondrial/chloroplast ribosomal protein L2 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_26471 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.0e-18
Identity = 52/75 (69.33%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 69  VSVIAMNSHRLLGKGRRMGPIIGHTMHYRRMIITL-------------QPAVDNQVKSNP 128
           V VIAMNSHRL  KGRRMGPI+GHTMHYRRMIIT+                VD+QVKSNP
Sbjct: 45  VKVIAMNSHRLPVKGRRMGPIMGHTMHYRRMIITMAIHLYKTSTPSTRNGTVDSQVKSNP 104

Query: 129 RNNLIYGQHRCGKGR 131
           RNNLIYGQH CGKGR
Sbjct: 105 RNNLIYGQHHCGKGR 119

[Close]

BLAST of CmUC11G211370 vs. TAIR 10
Match: ATCG00840.1 (ribosomal protein L23.1 )

HSP 1 Score: 68.9 bits (167), Expect = 3.7e-12
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 69  VSVIAMNSHRLLGKGRRMGPIIGHTMHYRRMIITLQP 106
           V VIAMNSHRL GK +RMGPI+GHTMHYRRMIITLQP
Sbjct: 45  VKVIAMNSHRLPGKVKRMGPILGHTMHYRRMIITLQP 81

[Close]

BLAST of CmUC11G211370 vs. TAIR 10
Match: ATCG01300.1 (ribosomal protein L23 )

HSP 1 Score: 68.9 bits (167), Expect = 3.7e-12
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 69  VSVIAMNSHRLLGKGRRMGPIIGHTMHYRRMIITLQP 106
           V VIAMNSHRL GK +RMGPI+GHTMHYRRMIITLQP
Sbjct: 45  VKVIAMNSHRLPGKVKRMGPILGHTMHYRRMIITLQP 81

[Close]

BLAST of CmUC11G211370 vs. TAIR 10
Match: ATCG00830.1 (ribosomal protein L2 )

HSP 1 Score: 50.8 bits (120), Expect = 1.0e-06
Identity = 23/29 (79.31%), Postives = 24/29 (82.76%), Query Frame = 0


Query: 102 TLQPAVDNQVKSNPRNNLIYGQHRCGKGR 131
           T   AVD+QVKSNPRNNLI GQH CGKGR
Sbjct: 13  TRNGAVDSQVKSNPRNNLICGQHHCGKGR 41

[Close]

BLAST of CmUC11G211370 vs. TAIR 10
Match: ATCG01310.1 (ribosomal protein L2 )

HSP 1 Score: 50.8 bits (120), Expect = 1.0e-06
Identity = 23/29 (79.31%), Postives = 24/29 (82.76%), Query Frame = 0


Query: 102 TLQPAVDNQVKSNPRNNLIYGQHRCGKGR 131
           T   AVD+QVKSNPRNNLI GQH CGKGR
Sbjct: 13  TRNGAVDSQVKSNPRNNLICGQHHCGKGR 41

The following BLAST results are available for this feature:

BLAST of CmUC11G211370 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3946242.1	1.5e-23	90.32	hypothetical protein CMV_027466 [Castanea mollissima]	[more]
TYI09250.1	5.7e-23	94.74	hypothetical protein ES332_A09G058600v1 [Gossypium tomentosum]	[more]
TYI09266.1	5.7e-23	94.74	hypothetical protein ES332_A09G060200v1 [Gossypium tomentosum]	[more]
KAG5606025.1	1.2e-20	87.10	hypothetical protein H5410_027517 [Solanum commersonii]	[more]
KAG4119256.1	3.5e-20	77.14	hypothetical protein ERO13_D11G067360v2 [Gossypium hirsutum]	[more]

BLAST of CmUC11G211370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q06GJ6	9.5e-13	94.59	50S ribosomal protein L23, chloroplastic OS=Piper cenocladum OX=398741 GN=rpl23-...	[more]
A0A378	2.8e-12	91.89	50S ribosomal protein L23, chloroplastic OS=Coffea arabica OX=13443 GN=rpl23-A P...	[more]
Q4VZK6	2.8e-12	91.89	50S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl23-A P...	[more]
Q06GT3	2.8e-12	91.89	50S ribosomal protein L23, chloroplastic OS=Drimys granadensis OX=224735 GN=rpl2...	[more]
A0ZZ77	2.8e-12	91.89	50S ribosomal protein L23, chloroplastic OS=Gossypium barbadense OX=3634 GN=rpl2...	[more]

BLAST of CmUC11G211370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D2P0J4	2.8e-23	94.74	50S ribosomal protein L2, chloroplastic OS=Gossypium tomentosum OX=34277 GN=ES33...	[more]
A0A5D2P3Y3	2.8e-23	94.74	50S ribosomal protein L2, chloroplastic OS=Gossypium tomentosum OX=34277 GN=ES33...	[more]
A0A5D2D6S0	1.8e-19	74.29	50S ribosomal protein L2, chloroplastic OS=Gossypium darwinii OX=34276 GN=ES288_...	[more]
A0A411K5D6	7.0e-19	58.76	Ribosomal protein L2 OS=Rhabdodendron amazonicum OX=63102 GN=rpl2 PE=3 SV=1	[more]
A0A2G9G6U0	2.0e-18	69.33	Mitochondrial/chloroplast ribosomal protein L2 OS=Handroanthus impetiginosus OX=...	[more]

BLAST of CmUC11G211370 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00840.1	3.7e-12	86.49	ribosomal protein L23.1	[more]
ATCG01300.1	3.7e-12	86.49	ribosomal protein L23	[more]
ATCG00830.1	1.0e-06	79.31	ribosomal protein L2	[more]
ATCG01310.1	1.0e-06	79.31	ribosomal protein L2	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 65..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC11G211370.1	CmUC11G211370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0009536	plastid
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0016740	transferase activity