CmUC11G211280 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC11G211280
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Photosystem I P700 chlorophyll a apoprotein A1
Location	CmU531Chr11: 7749601 .. 7751109 (-)
RNA-Seq Expression	CmUC11G211280
Synteny	CmUC11G211280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCGAAAGCCTGACGGAGCAATGCCGCGCTTTGCTAAGGAACGAAGCTTCGTGTTTGTTTTTCTTCAAACCCCCAATCCGCTCTCGCTCGCCGCTACTAACGGGGTCTCGGTTGATTTCCCTTCCTTTAGCTACTCAGATGTTTCAATTCGCTAAGTTTGAAAAGTCCAAAGAGCGCAGACTAGCTGAACTCAAAAGTGTAAGCCTGATTAGTGAAGTCTTAAAAACTTCATAGAATTCAATGAATGATCAACCATTCCATTTGTGCTTGAAGCAAGTAGGCGACGCGAATCTATGGTTTCTATGTTTCAATGGGATACCAATTGCTTGGATGCCCTTGTTTGAAAGCCGGAAACCTGGAATAGTAGAAAGCAGCGGTAAGAGACCGATTGAACAGCTTTTCTTGGCTAGAATAGCTCTATTTGAACTAGTTGAAGCGGTAGTGGAAGGTACCGTTTTCCCTCAATCAGTTTGTTGGGAAGGCAGGAGTAGAATAGAAGACTAAAAGCATCGCGATCGAGTGATGTAGGTGCACAAGAGTACTTCGCGCCACAACCATCTCTTTTTTATAGGTTCTACGGACCGATGCCTGCTGCTTCATCTGGGAGAAAAGAATCATTGATATGCCGGTCATTAGAAGGAAGAACCTGATTTTCTTTTTCTTTCAAGGCACGATTCCTTACCAGTTATTCTGACGTCCTGTATGATTGCAGGGTTGTTCGGGAATCCCTTTGCAACTTCCTGGACGTTCATACATACTTTTTCTTTAGTCTTTCAATTACAATATAGTTTCTAATAATAAATAAAGGAAATGGAGAGCAAATTGAAGAAATGACCTTAAATCTTAGTGTCCTGACTCCGAATCGAATTATTTGGGATTCAGAAGTGAAAGAAATCATTTTAGTTACGAATAGTGGCCAAATTGGTGTATTACCAGATCACGCACCACTCGCCTTTTTCTCGGCTAAAGCTAGCTCTGTGATCTGCTTTCTTTGGAGATAACGGACGCAGGATATTCATTCTCATTCTCATTCTCATTCTCATTCTCATTCTCATTGGTGAGATTGAGAGTTTCTTGCTCCTTAATCGCGGAGCAGCATACCGAAAAAAAAAAGGCCCTGTAGGTTCAAGTCACACTTTTAGCTTGCTATAAGCTGGGCTCAGGGACAGCAGTCAGCCGACGAAAAAAAGAATCGACCGTTTAAGTATTCAAAATTTTACTAAAAAAATATATATAAAGCGGTGCAAATATATATGTCTATATATCTATCTATATTGAATTATATTGAATTGCAGATACAGAAATGATAGAATCATTTTGGATCGGACCAAATACGGGTCTCCGATAATTGGTGCATTAGTCTTTGCAGCCTTAATGCTTTTTGCCGGTTGGTTTCATTATCACAAGGCTGCTCCTAAATTGGCTTGGTTCCAAGATGTCGAATCCATGTTGAATCACCATTTAGCGGGTCTGTTAGGACTTGGGCCGCCCAAAACCTGGAGCTAA

mRNA sequence

ATGGGCGAAAGCCTGACGGAGCAATGCCGCGCTTTGCTAAGGAACGAAGCTTCGTGTTTGTTTTTCTTCAAACCCCCAATCCGCTCTCGCTCGCCGCTACTAACGGGGTCTCGGTTGATTTCCCTTCCTTTAGCTACTCAGATGTTTCAATTCGCTAAGTTTGAAAAGTCCAAAGAGCGCAGACTAGCTGAACTCAAAAGTCAAGTAGGCGACGCGAATCTATGGTTTCTATGTTTCAATGGGATACCAATTGCTTGGATGCCCTTGTTTGAAAGCCGGAAACCTGGAATAGTAGAAAGCAGCGGTAAGAGACCGATTGAACAGCTTTTCTTGGCTAGAATAGCTCTATTTGAACTAGTTGAAGCGGTAGTGGAAGGTGCACAAGAGTACTTCGCGCCACAACCATCTCTTTTTTATAGGTTCTACGGACCGATGCCTGCTGCTTCATCTGGGAGAAAAGAATCATTGATATGCCGATACAGAAATGATAGAATCATTTTGGATCGGACCAAATACGGGTCTCCGATAATTGGTGCATTAGTCTTTGCAGCCTTAATGCTTTTTGCCGGTTGGTTTCATTATCACAAGGCTGCTCCTAAATTGGCTTGGTTCCAAGATGTCGAATCCATGTTGAATCACCATTTAGCGGGTCTGTTAGGACTTGGGCCGCCCAAAACCTGGAGCTAA

Coding sequence (CDS)

ATGGGCGAAAGCCTGACGGAGCAATGCCGCGCTTTGCTAAGGAACGAAGCTTCGTGTTTGTTTTTCTTCAAACCCCCAATCCGCTCTCGCTCGCCGCTACTAACGGGGTCTCGGTTGATTTCCCTTCCTTTAGCTACTCAGATGTTTCAATTCGCTAAGTTTGAAAAGTCCAAAGAGCGCAGACTAGCTGAACTCAAAAGTCAAGTAGGCGACGCGAATCTATGGTTTCTATGTTTCAATGGGATACCAATTGCTTGGATGCCCTTGTTTGAAAGCCGGAAACCTGGAATAGTAGAAAGCAGCGGTAAGAGACCGATTGAACAGCTTTTCTTGGCTAGAATAGCTCTATTTGAACTAGTTGAAGCGGTAGTGGAAGGTGCACAAGAGTACTTCGCGCCACAACCATCTCTTTTTTATAGGTTCTACGGACCGATGCCTGCTGCTTCATCTGGGAGAAAAGAATCATTGATATGCCGATACAGAAATGATAGAATCATTTTGGATCGGACCAAATACGGGTCTCCGATAATTGGTGCATTAGTCTTTGCAGCCTTAATGCTTTTTGCCGGTTGGTTTCATTATCACAAGGCTGCTCCTAAATTGGCTTGGTTCCAAGATGTCGAATCCATGTTGAATCACCATTTAGCGGGTCTGTTAGGACTTGGGCCGCCCAAAACCTGGAGCTAA

Protein sequence

MGESLTEQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKERRLAELKSQVGDANLWFLCFNGIPIAWMPLFESRKPGIVESSGKRPIEQLFLARIALFELVEAVVEGAQEYFAPQPSLFYRFYGPMPAASSGRKESLICRYRNDRIILDRTKYGSPIIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGPPKTWS

Homology

[Close]

BLAST of CmUC11G211280 vs. NCBI nr
Match: OIT35639.1 (putative mitochondrial protein, partial [Nicotiana attenuata])

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-19
Identity = 63/95 (66.32%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 7  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKERRLA-EL 66
          ++   LLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLAT+MFQFAKFEKSKERRLA EL
Sbjct: 6  KEVNTLLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATKMFQFAKFEKSKERRLATEL 65

Query: 67 KSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI 98
                 + W    NGI   P A   +  S+ PGI
Sbjct: 66 GYGFPIGDPWIT--NGISPWPFASKNVLPSQCPGI 98

[Close]

BLAST of CmUC11G211280 vs. NCBI nr
Match: YP_173374.1 (hypothetical protein NitaMp027 [Nicotiana tabacum] >YP_173501.1 hypothetical protein NitaMp164 [Nicotiana tabacum] >OIT02104.1 putative mitochondrial protein [Nicotiana attenuata] >OIT22081.1 putative mitochondrial protein [Nicotiana attenuata] >OIT29650.1 putative mitochondrial protein [Nicotiana attenuata] >OIT34301.1 putative mitochondrial protein [Nicotiana attenuata] >OIT34302.1 putative mitochondrial protein [Nicotiana attenuata])

HSP 1 Score: 105.9 bits (263), Expect = 4.6e-19
Identity = 62/95 (65.26%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 7  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKERRLA-EL 66
          ++   LLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLAT+MFQFAKFEKSKERRLA EL
Sbjct: 6  KEVNTLLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATKMFQFAKFEKSKERRLATEL 65

Query: 67 KSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI 98
                 + W    +GI   P A   +  S+ PGI
Sbjct: 66 GYGFPIGDPWIT--DGISPWPFASESVLPSQCPGI 98

[Close]

BLAST of CmUC11G211280 vs. NCBI nr
Match: QVJ97967.1 (hypothetical protein [Apium graveolens])

HSP 1 Score: 104.4 bits (259), Expect = 1.3e-18
Identity = 62/95 (65.26%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 7  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKERRLA-EL 66
          ++   LLRNEASCLFFFKPPIRSRSPLLT SRLISLPLATQMFQFAKFEKSKERRLA EL
Sbjct: 6  KEVNTLLRNEASCLFFFKPPIRSRSPLLTESRLISLPLATQMFQFAKFEKSKERRLATEL 65

Query: 67 KSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI 98
                 + W    +GI   P A   +  S+ PGI
Sbjct: 66 GYGFPIGDPWIT--DGISPWPFASESVLPSQCPGI 98

[Close]

BLAST of CmUC11G211280 vs. NCBI nr
Match: TXG46219.1 (hypothetical protein EZV62_028250 [Acer yangbiense] >TXG46255.1 hypothetical protein EZV62_028286 [Acer yangbiense])

HSP 1 Score: 103.6 bits (257), Expect = 2.3e-18
Identity = 62/95 (65.26%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 7   EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKERRLA-EL 66
           ++   LLRNEAS LFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKERRLA EL
Sbjct: 467 KEVNTLLRNEASSLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKERRLATEL 526

Query: 67  KSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI 98
                  + W    +GI   P A   +  S+ PGI
Sbjct: 527 GYGFPIGDPWIT--DGISPWPFASESVLPSQCPGI 559

[Close]

BLAST of CmUC11G211280 vs. NCBI nr
Match: KZM80319.1 (hypothetical protein DCAR_031801 [Daucus carota subsp. sativus] >KZM87143.1 hypothetical protein DCAR_024277 [Daucus carota subsp. sativus])

HSP 1 Score: 103.6 bits (257), Expect = 2.3e-18
Identity = 62/90 (68.89%), Postives = 66/90 (73.33%), Query Frame = 0


Query: 12 LLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKERRLA-ELKSQVG 71
          LLRNEASCLFFFKPPIRSRSPLLT SRLISLPLATQMFQFAKFEKSKERRLA EL     
Sbjct: 11 LLRNEASCLFFFKPPIRSRSPLLTESRLISLPLATQMFQFAKFEKSKERRLATELGYGFP 70

Query: 72 DANLWFLCFNGI---PIAWMPLFESRKPGI 98
            + W    +GI   P A   +  S+ PGI
Sbjct: 71 IGDPWIT--DGISPWPFASESVLPSQCPGI 98

[Close]

BLAST of CmUC11G211280 vs. ExPASy Swiss-Prot
Match: Q3V534 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Acorus calamus OX=4465 GN=psaA PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.3e-20
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 177 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG 223
           IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG
Sbjct: 161 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG 206

[Close]

BLAST of CmUC11G211280 vs. ExPASy Swiss-Prot
Match: A4QJB5 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Aethionema cordifolium OX=434059 GN=psaA PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.3e-20
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 177 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG 223
           IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG
Sbjct: 161 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG 206

[Close]

BLAST of CmUC11G211280 vs. ExPASy Swiss-Prot
Match: A4QJJ9 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Aethionema grandiflorum OX=72657 GN=psaA PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.3e-20
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 177 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG 223
           IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG
Sbjct: 161 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG 206

[Close]

BLAST of CmUC11G211280 vs. ExPASy Swiss-Prot
Match: Q70Y03 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Amborella trichopoda OX=13333 GN=psaA PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.3e-20
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 177 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG 223
           IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG
Sbjct: 161 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG 206

[Close]

BLAST of CmUC11G211280 vs. ExPASy Swiss-Prot
Match: A4QK18 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Arabis hirsuta OX=78191 GN=psaA PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.3e-20
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 177 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG 223
           IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG
Sbjct: 161 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG 206

[Close]

BLAST of CmUC11G211280 vs. ExPASy TrEMBL
Match: A0A314L3P4 (Putative mitochondrial protein (Fragment) OS=Nicotiana attenuata OX=49451 GN=A4A49_57720 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 5.9e-20
Identity = 63/95 (66.32%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 7  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKERRLA-EL 66
          ++   LLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLAT+MFQFAKFEKSKERRLA EL
Sbjct: 6  KEVNTLLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATKMFQFAKFEKSKERRLATEL 65

Query: 67 KSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI 98
                 + W    NGI   P A   +  S+ PGI
Sbjct: 66 GYGFPIGDPWIT--NGISPWPFASKNVLPSQCPGI 98

[Close]

BLAST of CmUC11G211280 vs. ExPASy TrEMBL
Match: Q5M9R1 (Uncharacterized protein OS=Nicotiana tabacum OX=4097 GN=orf138c PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.2e-19
Identity = 62/95 (65.26%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 7  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKERRLA-EL 66
          ++   LLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLAT+MFQFAKFEKSKERRLA EL
Sbjct: 6  KEVNTLLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATKMFQFAKFEKSKERRLATEL 65

Query: 67 KSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI 98
                 + W    +GI   P A   +  S+ PGI
Sbjct: 66 GYGFPIGDPWIT--DGISPWPFASESVLPSQCPGI 98

[Close]

BLAST of CmUC11G211280 vs. ExPASy TrEMBL
Match: A0A1J6INJ4 (Putative mitochondrial protein OS=Nicotiana attenuata OX=49451 GN=A4A49_32027 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.2e-19
Identity = 62/95 (65.26%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 7  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKERRLA-EL 66
          ++   LLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLAT+MFQFAKFEKSKERRLA EL
Sbjct: 6  KEVNTLLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATKMFQFAKFEKSKERRLATEL 65

Query: 67 KSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI 98
                 + W    +GI   P A   +  S+ PGI
Sbjct: 66 GYGFPIGDPWIT--DGISPWPFASESVLPSQCPGI 98

[Close]

BLAST of CmUC11G211280 vs. ExPASy TrEMBL
Match: A0A161X3X2 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_024277 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-18
Identity = 62/90 (68.89%), Postives = 66/90 (73.33%), Query Frame = 0


Query: 12 LLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKERRLA-ELKSQVG 71
          LLRNEASCLFFFKPPIRSRSPLLT SRLISLPLATQMFQFAKFEKSKERRLA EL     
Sbjct: 11 LLRNEASCLFFFKPPIRSRSPLLTESRLISLPLATQMFQFAKFEKSKERRLATELGYGFP 70

Query: 72 DANLWFLCFNGI---PIAWMPLFESRKPGI 98
            + W    +GI   P A   +  S+ PGI
Sbjct: 71 IGDPWIT--DGISPWPFASESVLPSQCPGI 98

[Close]

BLAST of CmUC11G211280 vs. ExPASy TrEMBL
Match: A0A5C7GP19 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_028250 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-18
Identity = 62/95 (65.26%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 7   EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKERRLA-EL 66
           ++   LLRNEAS LFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKERRLA EL
Sbjct: 467 KEVNTLLRNEASSLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKERRLATEL 526

Query: 67  KSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI 98
                  + W    +GI   P A   +  S+ PGI
Sbjct: 527 GYGFPIGDPWIT--DGISPWPFASESVLPSQCPGI 559

[Close]

BLAST of CmUC11G211280 vs. TAIR 10
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 100.1 bits (248), Expect = 2.4e-21
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 177 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG 223
           IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG
Sbjct: 161 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG 206

[Close]

BLAST of CmUC11G211280 vs. TAIR 10
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 48.5 bits (114), Expect = 8.2e-06
Identity = 21/43 (48.84%), Postives = 29/43 (67.44%), Query Frame = 0


Query: 180 LVFAALMLFAGWFHYH-KAAPKLAWFQDVESMLNHHLAGLLGL 222
           L  +AL L  GW H   K  P+++WF++ ES LNHHL+GL G+
Sbjct: 143 LFLSALSLIGGWLHLQPKWKPRVSWFKNAESRLNHHLSGLFGV 185

The following BLAST results are available for this feature:

BLAST of CmUC11G211280 vs. NCBI nr


Match Name	E-value	Identity	Description
OIT35639.1	1.2e-19	66.32	putative mitochondrial protein, partial [Nicotiana attenuata]	[more]
YP_173374.1	4.6e-19	65.26	hypothetical protein NitaMp027 [Nicotiana tabacum] >YP_173501.1 hypothetical pro...	[more]
QVJ97967.1	1.3e-18	65.26	hypothetical protein [Apium graveolens]	[more]
TXG46219.1	2.3e-18	65.26	hypothetical protein EZV62_028250 [Acer yangbiense] >TXG46255.1 hypothetical pro...	[more]
KZM80319.1	2.3e-18	68.89	hypothetical protein DCAR_031801 [Daucus carota subsp. sativus] >KZM87143.1 hypo...	[more]

BLAST of CmUC11G211280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3V534	3.3e-20	100.00	Photosystem I P700 chlorophyll a apoprotein A1 OS=Acorus calamus OX=4465 GN=psaA...	[more]
A4QJB5	3.3e-20	100.00	Photosystem I P700 chlorophyll a apoprotein A1 OS=Aethionema cordifolium OX=4340...	[more]
A4QJJ9	3.3e-20	100.00	Photosystem I P700 chlorophyll a apoprotein A1 OS=Aethionema grandiflorum OX=726...	[more]
Q70Y03	3.3e-20	100.00	Photosystem I P700 chlorophyll a apoprotein A1 OS=Amborella trichopoda OX=13333 ...	[more]
A4QK18	3.3e-20	100.00	Photosystem I P700 chlorophyll a apoprotein A1 OS=Arabis hirsuta OX=78191 GN=psa...	[more]

BLAST of CmUC11G211280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A314L3P4	5.9e-20	66.32	Putative mitochondrial protein (Fragment) OS=Nicotiana attenuata OX=49451 GN=A4A...	[more]
Q5M9R1	2.2e-19	65.26	Uncharacterized protein OS=Nicotiana tabacum OX=4097 GN=orf138c PE=4 SV=1	[more]
A0A1J6INJ4	2.2e-19	65.26	Putative mitochondrial protein OS=Nicotiana attenuata OX=49451 GN=A4A49_32027 PE...	[more]
A0A161X3X2	1.1e-18	68.89	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_024277 ...	[more]
A0A5C7GP19	1.1e-18	65.26	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_028250 PE=4 SV=1	[more]

BLAST of CmUC11G211280 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00350.1	2.4e-21	100.00	Photosystem I, PsaA/PsaB protein	[more]
ATCG00340.1	8.2e-06	48.84	Photosystem I, PsaA/PsaB protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001280	Photosystem I PsaA/PsaB	PRINTS	PR00257	PHOTSYSPSAAB	coord: 172..196 score: 49.76 coord: 211..228 score: 38.83
IPR001280	Photosystem I PsaA/PsaB	PFAM	PF00223	PsaA_PsaB	coord: 176..222 e-value: 2.8E-19 score: 68.9
IPR036408	Photosystem I PsaA/PsaB superfamily	GENE3D	1.20.1130.10	Photosystem I PsaA/PsaB	coord: 166..225 e-value: 1.2E-17 score: 65.0
IPR036408	Photosystem I PsaA/PsaB superfamily	SUPERFAMILY	81558	Photosystem I subunits PsaA/PsaB	coord: 177..222
IPR006243	Photosystem I PsaA	PANTHER	PTHR30128:SF60	PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1	coord: 176..223
None	No IPR available	PANTHER	PTHR30128	OUTER MEMBRANE PROTEIN, OMPA-RELATED	coord: 176..223

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC11G211280.1	CmUC11G211280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0015979	photosynthesis
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0042651	thylakoid membrane
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0046872	metal ion binding