CmUC11G205070 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC11G205070
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	DNA-directed RNA polymerase subunit beta'
Location	CmU531Chr11: 1455910 .. 1456163 (-)
RNA-Seq Expression	CmUC11G205070
Synteny	CmUC11G205070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGATTGGTATAAACATCAACAACTCCGAATTGGATTAGTTTCTCCTCAACAAATAAGTGCTTGGGCCAATAAAACCCAACCTAATGGCGAGATAGTTGGGGAGGTAACAAAACTTTATCTTTACTTTTCATTAAAAAACCAATAAACCTGAAAAAGAAAGATGGACTATTTTGTGAAAGAATTTTGGGGCCTATAAAAAGCGGGATTTGTGCTTGTGGAAATTATCGAGTAATTGGAGATAAAAAATAA

mRNA sequence

ATGATCGATTGGTATAAACATCAACAACTCCGAATTGGATTAGTTTCTCCTCAACAAATAAGTGCTTGGGCCAATAAAACCCAACCTAATGGCGAGATAGTTGGGGAGAAAGATGGACTATTTTGTGAAAGAATTTTGGGGCCTATAAAAAGCGGGATTTGTGCTTGTGGAAATTATCGAGTAATTGGAGATAAAAAATAA

Coding sequence (CDS)

ATGATCGATTGGTATAAACATCAACAACTCCGAATTGGATTAGTTTCTCCTCAACAAATAAGTGCTTGGGCCAATAAAACCCAACCTAATGGCGAGATAGTTGGGGAGAAAGATGGACTATTTTGTGAAAGAATTTTGGGGCCTATAAAAAGCGGGATTTGTGCTTGTGGAAATTATCGAGTAATTGGAGATAAAAAATAA

Protein sequence

MIDWYKHQQLRIGLVSPQQISAWANKTQPNGEIVGEKDGLFCERILGPIKSGICACGNYRVIGDKK

Homology

[Close]

BLAST of CmUC11G205070 vs. NCBI nr
Match: AHM88912.1 (RNA polymerase beta [Lagenaria siceraria])

HSP 1 Score: 127.5 bits (319), Expect = 4.3e-26
Identity = 63/81 (77.78%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1  MIDWYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERI 60
          MID YKHQQLRIGLVSPQQISAWANKT PNGEIVG               EKDGLFCERI
Sbjct: 1  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61 LGPIKSGICACGNYRVIGDKK 67
           GPIKSGICACGNYRVIGDKK
Sbjct: 61 FGPIKSGICACGNYRVIGDKK 81

[Close]

BLAST of CmUC11G205070 vs. NCBI nr
Match: YP_247590.2 (RNA polymerase beta' subunit [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 4.3e-26
Identity = 63/81 (77.78%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1  MIDWYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERI 60
          MID YKHQQLRIGLVSPQQISAWANKT PNGEIVG               EKDGLFCERI
Sbjct: 1  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61 LGPIKSGICACGNYRVIGDKK 67
           GPIKSGICACGNYRVIGDKK
Sbjct: 61 FGPIKSGICACGNYRVIGDKK 81

[Close]

BLAST of CmUC11G205070 vs. NCBI nr
Match: ASY96794.1 (RNA polymerase beta' subunit [Cucumis melo var. momordica] >ASY96968.1 RNA polymerase beta' subunit [Cucumis melo var. cantalupo] >ASY97316.1 RNA polymerase beta' subunit [Cucumis melo var. flexuosus] >ASY97055.1 RNA polymerase beta' subunit [Cucumis melo var. cantalupo] >ASY97229.1 RNA polymerase beta' subunit [Cucumis melo var. cantalupo])

HSP 1 Score: 127.5 bits (319), Expect = 4.3e-26
Identity = 63/81 (77.78%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1  MIDWYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERI 60
          MID YKHQQLRIGLVSPQQISAWANKT PNGEIVG               EKDGLFCERI
Sbjct: 1  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61 LGPIKSGICACGNYRVIGDKK 67
           GPIKSGICACGNYRVIGDKK
Sbjct: 61 FGPIKSGICACGNYRVIGDKK 81

[Close]

BLAST of CmUC11G205070 vs. NCBI nr
Match: AHM88970.1 (RNA polymerase beta [Lagenaria siceraria])

HSP 1 Score: 127.5 bits (319), Expect = 4.3e-26
Identity = 63/81 (77.78%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1  MIDWYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERI 60
          MID YKHQQLRIGLVSPQQISAWANKT PNGEIVG               EKDGLFCERI
Sbjct: 1  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61 LGPIKSGICACGNYRVIGDKK 67
           GPIKSGICACGNYRVIGDKK
Sbjct: 61 FGPIKSGICACGNYRVIGDKK 81

[Close]

BLAST of CmUC11G205070 vs. NCBI nr
Match: YP_009751644.1 (RNA polymerase beta' subunit [Hodgsonia heteroclita] >QIT04377.1 RNA polymerase beta' subunit [Hodgsonia heteroclita])

HSP 1 Score: 127.5 bits (319), Expect = 4.3e-26
Identity = 63/81 (77.78%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1  MIDWYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERI 60
          MID YKHQQLRIGLVSPQQISAWANKT PNGEIVG               EKDGLFCERI
Sbjct: 1  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61 LGPIKSGICACGNYRVIGDKK 67
           GPIKSGICACGNYRVIGDKK
Sbjct: 61 FGPIKSGICACGNYRVIGDKK 81

[Close]

BLAST of CmUC11G205070 vs. ExPASy Swiss-Prot
Match: Q4VZP2 (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE=3 SV=3)

HSP 1 Score: 127.5 bits (319), Expect = 5.6e-29
Identity = 63/81 (77.78%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1  MIDWYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERI 60
          MID YKHQQLRIGLVSPQQISAWANKT PNGEIVG               EKDGLFCERI
Sbjct: 1  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61 LGPIKSGICACGNYRVIGDKK 67
           GPIKSGICACGNYRVIGDKK
Sbjct: 61 FGPIKSGICACGNYRVIGDKK 81

[Close]

BLAST of CmUC11G205070 vs. ExPASy Swiss-Prot
Match: A6MM27 (DNA-directed RNA polymerase subunit beta' OS=Buxus microphylla OX=153571 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.8e-27
Identity = 60/81 (74.07%), Postives = 62/81 (76.54%), Query Frame = 0


Query: 1  MIDWYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERI 60
          MID YKHQQLRIGLVSPQQISAWANK  PNGEIVG               E+DGLFCERI
Sbjct: 1  MIDRYKHQQLRIGLVSPQQISAWANKILPNGEIVGEVTKPYTFHYKTNKPERDGLFCERI 60

Query: 61 LGPIKSGICACGNYRVIGDKK 67
           GPIKSGICACGNYRVIGD+K
Sbjct: 61 FGPIKSGICACGNYRVIGDEK 81

[Close]

BLAST of CmUC11G205070 vs. ExPASy Swiss-Prot
Match: B1A926 (DNA-directed RNA polymerase subunit beta' OS=Carica papaya OX=3649 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.8e-27
Identity = 60/81 (74.07%), Postives = 62/81 (76.54%), Query Frame = 0


Query: 1  MIDWYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERI 60
          MID YKHQQLRIGLVSPQQISAWAN+  PNGEIVG               EKDGLFCERI
Sbjct: 1  MIDRYKHQQLRIGLVSPQQISAWANRILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61 LGPIKSGICACGNYRVIGDKK 67
           GPIKSGICACGNYRVIGD+K
Sbjct: 61 FGPIKSGICACGNYRVIGDEK 81

[Close]

BLAST of CmUC11G205070 vs. ExPASy Swiss-Prot
Match: P60287 (DNA-directed RNA polymerase subunit beta' OS=Amborella trichopoda OX=13333 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.0e-27
Identity = 59/81 (72.84%), Postives = 62/81 (76.54%), Query Frame = 0


Query: 1  MIDWYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERI 60
          MID YKHQQLRIGLVSPQQI+AWANK  PNGE+VG               EKDGLFCERI
Sbjct: 1  MIDRYKHQQLRIGLVSPQQITAWANKILPNGEMVGEVTKPYTFHYKSNKPEKDGLFCERI 60

Query: 61 LGPIKSGICACGNYRVIGDKK 67
           GPIKSGICACGNYRVIGD+K
Sbjct: 61 FGPIKSGICACGNYRVIGDEK 81

[Close]

BLAST of CmUC11G205070 vs. ExPASy Swiss-Prot
Match: Q7YJX9 (DNA-directed RNA polymerase subunit beta' OS=Calycanthus floridus var. glaucus OX=212734 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.0e-27
Identity = 59/81 (72.84%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 1  MIDWYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERI 60
          MID YKHQQLRIG VSPQQI AWANKT PNGEI+G               EKDGLFCERI
Sbjct: 1  MIDRYKHQQLRIGSVSPQQIRAWANKTLPNGEIIGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61 LGPIKSGICACGNYRVIGDKK 67
           GPIKSGICACGNYRVIGD+K
Sbjct: 61 FGPIKSGICACGNYRVIGDEK 81

[Close]

BLAST of CmUC11G205070 vs. ExPASy TrEMBL
Match: A0A218KG20 (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus var. hardwickii OX=319220 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.1e-26
Identity = 63/81 (77.78%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1  MIDWYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERI 60
          MID YKHQQLRIGLVSPQQISAWANKT PNGEIVG               EKDGLFCERI
Sbjct: 1  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61 LGPIKSGICACGNYRVIGDKK 67
           GPIKSGICACGNYRVIGDKK
Sbjct: 61 FGPIKSGICACGNYRVIGDKK 81

[Close]

BLAST of CmUC11G205070 vs. ExPASy TrEMBL
Match: A0A6M3S6B8 (DNA-directed RNA polymerase subunit beta' OS=Trichosanthes kirilowii OX=3677 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.1e-26
Identity = 63/81 (77.78%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1  MIDWYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERI 60
          MID YKHQQLRIGLVSPQQISAWANKT PNGEIVG               EKDGLFCERI
Sbjct: 1  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61 LGPIKSGICACGNYRVIGDKK 67
           GPIKSGICACGNYRVIGDKK
Sbjct: 61 FGPIKSGICACGNYRVIGDKK 81

[Close]

BLAST of CmUC11G205070 vs. ExPASy TrEMBL
Match: A0A1X9Q1T5 (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.1e-26
Identity = 63/81 (77.78%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1  MIDWYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERI 60
          MID YKHQQLRIGLVSPQQISAWANKT PNGEIVG               EKDGLFCERI
Sbjct: 1  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61 LGPIKSGICACGNYRVIGDKK 67
           GPIKSGICACGNYRVIGDKK
Sbjct: 61 FGPIKSGICACGNYRVIGDKK 81

[Close]

BLAST of CmUC11G205070 vs. ExPASy TrEMBL
Match: A0A249RZJ2 (DNA-directed RNA polymerase subunit beta' OS=Cucumis melo var. cantalupensis OX=3658 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.1e-26
Identity = 63/81 (77.78%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1  MIDWYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERI 60
          MID YKHQQLRIGLVSPQQISAWANKT PNGEIVG               EKDGLFCERI
Sbjct: 1  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61 LGPIKSGICACGNYRVIGDKK 67
           GPIKSGICACGNYRVIGDKK
Sbjct: 61 FGPIKSGICACGNYRVIGDKK 81

[Close]

BLAST of CmUC11G205070 vs. ExPASy TrEMBL
Match: A0A1P8LE65 (DNA-directed RNA polymerase subunit gamma OS=Citrullus mucosospermus OX=519315 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.1e-26
Identity = 63/81 (77.78%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1  MIDWYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERI 60
          MID YKHQQLRIGLVSPQQISAWANKT PNGEIVG               EKDGLFCERI
Sbjct: 1  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61 LGPIKSGICACGNYRVIGDKK 67
           GPIKSGICACGNYRVIGDKK
Sbjct: 61 FGPIKSGICACGNYRVIGDKK 81

[Close]

BLAST of CmUC11G205070 vs. TAIR 10
Match: ATCG00180.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 120.9 bits (302), Expect = 3.8e-28
Identity = 60/81 (74.07%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 1  MIDWYKHQQLRIGLVSPQQISAWANKTQPNGEIVG---------------EKDGLFCERI 60
          MID YKHQQLRIGLVSPQQISAWA K  PNGEIVG               EKDGLFCERI
Sbjct: 1  MIDRYKHQQLRIGLVSPQQISAWATKIIPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61 LGPIKSGICACGNYRVIGDKK 67
           GPIKSGICACGNYRVIGD+K
Sbjct: 61 FGPIKSGICACGNYRVIGDEK 81

The following BLAST results are available for this feature:

BLAST of CmUC11G205070 vs. NCBI nr


Match Name	E-value	Identity	Description
AHM88912.1	4.3e-26	77.78	RNA polymerase beta [Lagenaria siceraria]	[more]
YP_247590.2	4.3e-26	77.78	RNA polymerase beta' subunit [Cucumis sativus]	[more]
ASY96794.1	4.3e-26	77.78	RNA polymerase beta' subunit [Cucumis melo var. momordica] >ASY96968.1 RNA polym...	[more]
AHM88970.1	4.3e-26	77.78	RNA polymerase beta [Lagenaria siceraria]	[more]
YP_009751644.1	4.3e-26	77.78	RNA polymerase beta' subunit [Hodgsonia heteroclita] >QIT04377.1 RNA polymerase ...	[more]

BLAST of CmUC11G205070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP2	5.6e-29	77.78	DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE...	[more]
A6MM27	1.8e-27	74.07	DNA-directed RNA polymerase subunit beta' OS=Buxus microphylla OX=153571 GN=rpoC...	[more]
B1A926	1.8e-27	74.07	DNA-directed RNA polymerase subunit beta' OS=Carica papaya OX=3649 GN=rpoC1 PE=3...	[more]
P60287	4.0e-27	72.84	DNA-directed RNA polymerase subunit beta' OS=Amborella trichopoda OX=13333 GN=rp...	[more]
Q7YJX9	4.0e-27	72.84	DNA-directed RNA polymerase subunit beta' OS=Calycanthus floridus var. glaucus O...	[more]

BLAST of CmUC11G205070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A218KG20	2.1e-26	77.78	DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus var. hardwickii OX=...	[more]
A0A6M3S6B8	2.1e-26	77.78	DNA-directed RNA polymerase subunit beta' OS=Trichosanthes kirilowii OX=3677 GN=...	[more]
A0A1X9Q1T5	2.1e-26	77.78	DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE...	[more]
A0A249RZJ2	2.1e-26	77.78	DNA-directed RNA polymerase subunit beta' OS=Cucumis melo var. cantalupensis OX=...	[more]
A0A1P8LE65	2.1e-26	77.78	DNA-directed RNA polymerase subunit gamma OS=Citrullus mucosospermus OX=519315 G...	[more]

BLAST of CmUC11G205070 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00180.1	3.8e-28	74.07	DNA-directed RNA polymerase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 6..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC11G205070.1	CmUC11G205070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009536	plastid
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016779	nucleotidyltransferase activity