CmUC11G204080 (gene) Watermelon (USVL531) v1

Overview
NameCmUC11G204080
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionUnknown protein
LocationCmU531Chr11: 393173 .. 393631 (+)
RNA-Seq ExpressionCmUC11G204080
SyntenyCmUC11G204080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGGGACTCCATATACCGGCTCCGGCGCCAAGTATTGCTGGTACGACGGACCGGCCACAAGCGGCGCAGCGATTTCGGCTCCGTCCAGATGTTCCGATTGCATTGAAGGCGGCGGAAAGGTCCGATCGTCTAGCCATGGCGGAAGTGGGGGAGCTGAGGGCTGCTGGGTTGCGGAGGAGCAATTGCAAGTGCAGCAATGGCACGGCGGCGGAGGGAAATGGTAGGGATTGTGGGTTTTCTTTGGCTTCTTGTTTTTGGACCAGAATTTGAGTTTCTTCTTGGTGGCTTTCAGCATTGTTTGGATTTTGTTTTGTGGTGTTAGTGGAAGGAAGGAAGGAGGAGGAGGAAGATTGGTTTTTGGGTGTGGATTTCTTTGGGAAAAGGGGGAATTCATTGATTGCTTTGCTTCTTTCAAATCTTCCGACCGTTGCTTTCTTCTTTTGTCTACTTTTTAG

mRNA sequence

ATGATCGGGACTCCATATACCGGCTCCGGCGCCAAGTATTGCTGGTACGACGGACCGGCCACAAGCGGCGCAGCGATTTCGGCTCCGTCCAGATGTTCCGATTGCATTGAAGGCGGCGGAAAGGTCCGATCGTCTAGCCATGGCGGAAGTGGGGGAGCTGAGGGCTGCTGGGTTGCGGAGGAGCAATTGCAAGTGCAGCAATGGCACGGCGGCGGAGGGAAATGCATTGTTTGGATTTTGTTTTGTGGTGTTAGTGGAAGGAAGGAAGGAGGAGGAGGAAGATTGGTTTTTGGGTGTGGATTTCTTTGGGAAAAGGGGGAATTCATTGATTGCTTTGCTTCTTTCAAATCTTCCGACCGTTGCTTTCTTCTTTTGTCTACTTTTTAG

Coding sequence (CDS)

ATGATCGGGACTCCATATACCGGCTCCGGCGCCAAGTATTGCTGGTACGACGGACCGGCCACAAGCGGCGCAGCGATTTCGGCTCCGTCCAGATGTTCCGATTGCATTGAAGGCGGCGGAAAGGTCCGATCGTCTAGCCATGGCGGAAGTGGGGGAGCTGAGGGCTGCTGGGTTGCGGAGGAGCAATTGCAAGTGCAGCAATGGCACGGCGGCGGAGGGAAATGCATTGTTTGGATTTTGTTTTGTGGTGTTAGTGGAAGGAAGGAAGGAGGAGGAGGAAGATTGGTTTTTGGGTGTGGATTTCTTTGGGAAAAGGGGGAATTCATTGATTGCTTTGCTTCTTTCAAATCTTCCGACCGTTGCTTTCTTCTTTTGTCTACTTTTTAG

Protein sequence

MIGTPYTGSGAKYCWYDGPATSGAAISAPSRCSDCIEGGGKVRSSSHGGSGGAEGCWVAEEQLQVQQWHGGGGKCIVWILFCGVSGRKEGGGGRLVFGCGFLWEKGEFIDCFASFKSSDRCFLLLSTF
Homology
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BLAST of CmUC11G204080 vs. NCBI nr
Match: KAG7032441.1 (hypothetical protein SDJN02_06486, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 112.8 bits (281), Expect = 2.1e-21
Identity = 58/73 (79.45%), Postives = 61/73 (83.56%), Query Frame = 0 

Query: 1   MIGTPYTGSGAKYCWYDGPATSGAAISAPSRCSDCIEGGGKVRSSSHGGSGGAEGCWVAE 60
           MIGTPYTGSG+ YCWY G ATSGAAISA S CS    GGGK+RSSSHGGSGGAEG W+AE
Sbjct: 170 MIGTPYTGSGSMYCWYSGAATSGAAISASSGCS----GGGKIRSSSHGGSGGAEG-WIAE 229

Query: 61  EQLQVQQWHGGGG 74
           EQ QVQQW GGGG
Sbjct: 230 EQWQVQQWQGGGG 237

The following BLAST results are available for this feature:
BLAST of CmUC11G204080 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7032441.12.1e-2179.45hypothetical protein SDJN02_06486, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmUC11G204080 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC11G204080 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC11G204080 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC11G204080.1CmUC11G204080.1mRNA