CmUC10G199820 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC10G199820
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Glycine-rich RNA-binding protein 4
Location	CmU531Chr10: 31908527 .. 31915741 (-)
RNA-Seq Expression	CmUC10G199820
Synteny	CmUC10G199820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTGTCTCGTGGCGATGGCCGATTCCGTCTTAGGTTTTCAAGTAAATTTCGGCCTTCACAATTTGGGCTCGGCCCATAATGCGGCAAGTTAGGCTTCGAATCTTTGGTACGATTACTCGTCGCCGTCGCCACTCCAGTCAGTCGAACCTCCGGCCGCCGTTCTTTCCACCGCTCTCTCGACTCGAAGATAAACGCATAGTATCACCCTGATACTACTACCATGGAGGCGATCAGAAAAGCGATGGCAATATCCTCCAATCGTCATGTTCTTCCCTCTCTATTTACTCCGCCGTCTCGTCTCGTCTCTTTTAGAGGCATAGCTTCGAAGCTCTTTGTTGGTGGTAAACTCAACGTTTCTCCTCTCTACTCTGTTCATTTTCCGATTCGTTATATCTACTTACTGTTTCAGTCTACGTTTTGGAATTGAAATCACACTTTTTGTTGGTATTTTTCTTTCTATGCTGGTTAACTGTTTCTCTGTTTCTGTGAATTGAGCTAACCATGTATGCTTGAACTAAGGTCTCTCCGATGATCGTACGTTAAGTTTCGTGAAGTATAAACTTTGTTTTAATCTTACAAGTGAAAGTACGACTGTCTAATGTGAGCTTCTGTGTTAATTTACTTCAGGAAACCACGATTGTGGAAAACTCTGTAGAAAACTTTTTGTATTGATATTCATTTCAAAATTGATATCTGTTATATATATTGTAAGGGATTAACATCTGATGGATATGCATACTTTCTCCTAATCTTGATGTCAAAGTTCAAAATGATGGATAGATATAAAAGGAATGTACAGGATTTGTAAAACGTTTCATTCTCATCTTAGGTCACATTTACTTATGGAGAGAAAAATTAGCAGAACTTATACATCCAGCTTTTCCCGCCGAGGGAAACACCAGGAAAAGAAAAAAAACAGATCTAGGAAAACATGGACTCTAGTAAGATTTCATTAGCTAAATTAGGAGTCTTGGTATCCGCAAGCACTAAGCCAACTTTTGAGAGAACTTCCCCTTCACTATTCAACACGTTTCTTTTTTCCAGTACACATTTCCTGAATATGGTCAAGTTTTAAGCCCCAAGCCCATAAGATAATGTAATATAAACCTCCCGAGTAGCCTCATCATCCACTAAGAGTGTAGTGTGGCATGTCTTTGAGTTCTAAGTGGTTTTCCCAAGGGGAATGGGCTTCTTGAATGGGTTTTGAAGGAATGGTCTTGCCTTGATGTCTTCCTAGTGAATCATGGCTTGTGCTTCGGCCCTAAAGAATCTGATAATATAATGAACGTTAGGAAATTGGGTGCAGGGAGTTGAGAGAGGAGGCATTTCTTGGAAGAGAGTAAAATAATCAATGAATTTTACGATACTAAACTTGGATTTTTCTGGTTCTTGATGTCTAAGGGGGGTTCTAAGGATGTTGAGGGTTCTTGAGGAGTAGGATTTGACCCATTTCAATGATTTCTAGGGATTGTAAATTTTATTTTACCGTTCATTCTTAAATATCATTTTTATTTTTATTTGTAATTTTCTCTCTAGGGTTCTTCTAATATTTGCTCTTCGTTTGGGCTTGCGTTCTTGTATGATCCTTGGTTTCGTTCTTTCATTTAACTTAATGGAAATTAGTTCTGGGAGAAAAATAAGATAGTGGTGGACTTGTCGAAGGACCATGGTCCATTTGCTTAGAGCCTTTTGTTTTTTAGTCCTGAAAATGGAAGAGATTTCTTCCCGAAGTGTCAATTGTTAATTTCTCCCCTAGTCTCCAAATGTATCTCAATACTTCATTGAAAAGCTTTAGTATTCACATTCTTGTGTCAGAGAATGTGTTTCCTTTTTCAAATAAAACATTATTGTGTCATAGAAATTTCCCCGTTAATGATATTAATGATATCGGTTGCTTCCTTCTTCCATGAGCCTCAACTCCCTACATCTTTCTGCAATTATATTGGAAGACTGGTGCCTTGATAATTGATTTAAATGAGGGGTTAGTTTGGTCTTATGCCATGTTGAAATTGTTTAGAATTGTCTGACACTTTTGCATTTAAATCCAACAGTTCATTGGCTCTATCGTGGCTTAGTTAAATCAGTCATCCACTTGCATGTTGACACGACAGTCACCGCCTTTGCGTCTATCTATACTTTTCTCCTCAACACCAAGTTTCTCAACCCGTTGATCAATAATATTGGCTTGGTCTTGATCTGACTGGCAACATCTTTTTTTTGTCCTTAGTCATTTTTTGTTTCTTTTAATCAAACCCTTCGTTCAAAAAGATACAACTTTCATAGTTTTCAGGATAAAAGTTTTTGTAAACATTATGAATGTAAAATTATTCATTTTAGACTATTTCCTTCTCAAACCCAAACGTTCATCTTCTAAATTATTCTAATTATTCTAAATAAAGAGTACAATAACTTGTATTTTACAAGTTATCAAAAACCTACTTTGCTTGCCATTGCTCATTGTACTTGATCACTAAAAAACCGACCATAAATCACCCGAAAGAGTTATAAAGGTAGAAGCTCCCTTAAAATCTCATAAGATGAAAACCTATAGAGACCTAGAGTGCATATGCAGCTTTAGCTTTACAAATCTAGGATGTGTAAGGTTCTTGAGCTTAACCTTGATTGTGATAATTGCTGGTGTGTGTGCGTTTTTTGAGGAAACTTTTGGTGTTTTCTTGTTCTGGCAAACTGCCACGTGGACTTGTTCTGTAACTGGATTTGTGGATTTTGAGGAACTGAGCCAATATTTATCCCTCTTTCATTGTTAACCTTTGATCTCAATTTTCTTTACTTCTTTGGAAGATTCTTAAATGTCACATTGACTAATAGAATTGTTTATTATGATTGAAAAAGAACAGAATCATTTGTCTACGAAAATGCTTTTGAGATTTTTGCTCTTGGTGTTATCAGTCAATTCATGTAACAGTACCTTATTCCATATTGAAATCCTCTTTCTGGAATATTTTGCTACAGGACTCTCATTTTACACTACAGACAAGGGACTGTCAGAAGCCTTTTCTCAGTACGGTCAGGTTGTTGAAGGTGACTTCCATTCAGATACTTTAGCTTTCATGTCCAACTCCAACCATGAGAATTTAGTTTCATGGAGCATAACACAATTTTCTCAACTCCAGCTAAAGTCGTGACGGACAGAGTCTCTGATAAGTCAAAGGGATTTGGATTCGTCACCTTTGCATCCGAAGACGAAGCTCATACAGCACTGACCGAGATGAATGGAAAGGTCTGCACTTCCCTCTATCATTACTTTTACATCTTAGAAATTGCGAGCTACCATGCTTTTCTACCCCACGATAAAGAGAAGAATAGTGAACTAATAGACAAACAAAGATTGAATTTAAGTTTAATGGTTATTTGCTGTAGCCTTTGAACGGAAGGGTTATTTTTGTGGACTATGCAAAACCAACATCCAATTTTCGTGGCGGAATTCCTATAGCGAGAGGACCTCCCGAGGAGAAAACTGAAGAATGATTGCTCAAAAAATTTTATGCGATGTCATTTATCGAAAAGAAATTAGCTGAAAAGGAAGGGAACAGTCCCTGTAGCTGTGCATGGGAAGTGTGATTCAGACATGTTCTTTCAGCAATTTGCTTCATGCCAGAGAAGTGTTAAAAGCTTCAGGAAAAAGAGGTCAGCTTGTAGGCATTTTTAAAATTCGTTGAAATTAGATTAACAGATTGATTTTGTCTTTAAAGTATTTTTTCTTCTTATTGGTTAAGTAGTACCCTATTAACTATGGTTAAACTGACGTTCAGACATTTGTCCTTATATTTTCTTAGTTTGCAGATTGCCATATTGTGACAGTAATCTTTCTTTTTGCAGCAATTAGTCTCAGTCTCAGGGTTAAAAATAAGGTTTAAATCTTTTTATTTTTATTTTTTATTTTCGACCTTATTCTACTTTGGTCCCTAGACTTTCAAAATATCTATTATAGTTCTTAAACTCACAACATAGGAAACATTTTGTTCTTCCTAAATCTTAGTCGATTTTGTTAGACACATAATGGATGGGGGGATGAAAATCATAATAATTAATTTTTTAATAGTTCAAAGTCTTAATAAATATTTCAAAAATTTAGAAATAAAAGTGAAATGAAGATATTTCCTCAAAAGAGAGTTTAGAGATTTTAAAAGTTATGAAACTGAGTTTAGGAATCAAAGCCTTATAATATCTCTGGAAATTTTCCTTAGATTAGTCCTTGAGGGAGGTGGTAGTTCTTCATGTGACTTCACATGAGTAACGGATGGAACTATTTTTTTTTTTTTTTTTTTTTTTTCATTTAAATCTTTGAGCTTGAAGGGGAAGGAAAAGAGTCACTAAGTACCGCACGTAATCACTGAGGGAAGGCGAGGGAGTATAATCTTTTATTTATTGTTTGATACATCAGCAGCCTTTTTTAAATGATATATAGTTCACCAACATTAAAAATATTTATAAAGCTAAAACTATAGTGTGAATAAAAGAGGATTATACTCCGTAGTCTTAAGAGTTAGAATTTCTCTTAGGGTAACGCATAGGCAACTTTGATAAGTATGAAGTGTTAGGGCTTTATATTTTGAGGCATAATGGGTGCAAGGTAGCTGCAACTTTATTTCCGGTTTTGATATAGATTATATGCTTATAATCTCTAATTTGGAGGAGCTAGGATTAGGTTGAGGGTAGAGTGGTCAAATTGTGTAGAAATTATTCAGGGAGGCCGAATAAAAGTCCATATAAATATTAAAAGGTTGAGACCAAGTGTGTTTAAAGTCATGGTCTTAATAGTTTACAATTTTAATGACAACCAAATGTAAATGTAACAGGATTAGATATTATTTCTCATGTAAAAAGTAGGTGTGATGTTCTAGTTGTACATGAATTTGGGTACCATGGATTGGCTTCACATTTAATTTTACGGTTTTCTTTGTTTGTGATATAAATTAGACTACATTTAATGTTGTTCTTGAACTGTAAAGTTGGATCTATTTTTCTATTTATTGGATGTACTTTAAAAAGTTGCTAATAAGTTTAGTAACTCATTAGTTAACCATGTATATAGAGGGAAAATTTCTAGTGCTCTCATAACTTGAGGGTTTATTTAAATTTATTTCTGTGTTTATGTTATATTTGTAGTCTCACTTTGATTGAAAATAAAATAAGTAAGAATTTATTTTAATTTAATAAAAAAGCATGAATATTGAGGATAAAGTATTTCAAAAAATTTATTAAAATAATGGATGTTATATTTCAAAAAAATTATTAAATACAAAAGTTTTAGATATGAAAGGCTCTAGTGAGAAACTTTTGAACTGGTTGGAAAATTATGTTTGACCATTTCGATATCCTCTTTTCTTTTATTTATTTATTTCTTTCAAATGGAATTTCGTAGACATTTTAAAGGAGCTTATTAAAATGGTCGAAAAATTAATTATATCTACTACCTTTGGACTTTGACTTCGAATTAGCACAATGACCTATGTGTATTTATTTAGCTATTTATTTTACTTTTAACAATGCCATATCCTAAAAGTTAGGTAACACTTCACATCTTGTTCTAAAATAAGAATAATAATAAAGAGAAAGACTCAACATAACTTATGAAGAACAACCAAACATTATTTAAGGTGACCATTATTGTATTTGTATAATAGGTGTTGACTTCACATTCATTTCTATAAGTTAACTGGCAAGAGGTTTGTTAAAGTGAATATGACTTTATCAAAATGAATATCGCTCAACTAATATATGAGTGTGTTATGACCACAAGGTTCATGTACATTTATCATTTCTTTCGAAATCGTTTATGCTTATACCGTTAAACTAAAAATAAAAACAACTTATAAGAGTTTTACTAAATTGATGATCTTATTTTATTTTATAGTTTTGAATATCATGTAGTAATATTATTGTCCAGATTTGCAAAATATGTATATATTACAATTATTAAGATGAGATTTAAGTTTATTATTATTATTATTTATTTTTTTAATATGTATTATTGACATTGATTTATGTTAAAATTGCAAATTTGCAACTACGTACGAATTCAAAAAACTAAAAATACAAATTTATTTTTTGGGGTACTATTTGTTTTGTTTATTTAGGAAATTTCATCTAAAGAAAAAACAAACACACAAAGTAGCAAACCCAAAAAACCCAAAGGCCAAACACATCATATCTAAAGTCCCTTCTCTCCTCACCTTCATTTCTTTCCTTTCCTTTTTCTTCTCCATAAACTCCTCCAACTTTTTCCTCTCCCTTTTTCCCTTTTTACCCTCCATTGCCCTTTCCAAAATTACCAAACTATCCTTCCCATCCAAGAATGTTCCATCCATGTCCTCCACTTGCAAATTCACTTCCCTCACTTGCAAATTCCCTCCCTCCCATCCTCCGCACGTCACTGCAATCCCGCACTTCACGCACTCTGCCGCCGTTCCTCTCTCACCGCCTAACACGGTCGCGAATTGCACGTGCACCTCCCCGCTCAGCCAGTGCCGCTGCACGCTCACCGGTCGGTAACTCGACAGATTCATCGCCCGCCGTCCAGCGGCGTCGATCATGATCCAGCTTAAACTCAAATCCTCCGCAAGTTCCCGGCAAGTATTTCCGCCGCCGATTGGAAACTTAATCGGCGTTGGAACTACATCCTTAGGATCGAGCATATCGATTCGAAACGGCGAGCAACGGAACCATCCGGAGACGGTCTCTGTCTCGACGACTTTGCTGAAAATCATTTCTCCGCGGTAATAGATATCGACGGCGGAGATCAATTCCGGCGGAAGGTGGCGACGGCGCCGACGATGGCTGTAGGTCGCCGGCGACGGAGGAGAAGAGGTGGAAGTTTCGGAATTATAAGAGAGGCAAGGGAAGGAATCGGAGAAGAAGGACCGAGGACCGTCGGGAAATTCCGAAATCAAAGCGTCGAGGCGCTGCGTCGCCGTCGACGGCCACGTGGAGTGACAGATATCCCCCCAGAGGCTTGGCTCGGCGGTGAGGCGGTGAAGTTGCGATGAAGTGCAGGCGGCGGCGGCGAGGGCCGGTCCGTCGAGACGCGTCAAGATGTGAGTTCGGAGAATATCTGGATGGATGTCTGAAATAGAGGTGGTAGCGCTGTCACCGGCGGCGGAGGAGACCGCCGACGGGGAAAATGTCCGATTAGTTGACATTTTCTTGAATTTTTTGGGTTTTTGATCATTCGGAGGGAAAGTGGGATATT

mRNA sequence

ATTTTGTCTCGTGGCGATGGCCGATTCCGTCTTAGGTTTTCAAGTAAATTTCGGCCTTCACAATTTGGGCTCGGCCCATAATGCGGCAAGTTAGGCTTCGAATCTTTGGTACGATTACTCGTCGCCGTCGCCACTCCAGTCAGTCGAACCTCCGGCCGCCGTTCTTTCCACCGCTCTCTCGACTCGAAGATAAACGCATAGTATCACCCTGATACTACTACCATGGAGGCGATCAGAAAAGCGATGGCAATATCCTCCAATCGTCATGTTCTTCCCTCTCTATTTACTCCGCCGTCTCGTCTCGTCTCTTTTAGAGGCATAGCTTCGAAGCTCTTTGTTGGTGGACTCTCATTTTACACTACAGACAAGGGACTGTCAGAAGCCTTTTCTCAGTACGGTCAGGTTGTTGAAGCTAAAGTCGTGACGGACAGAGTCTCTGATAAGTCAAAGGGATTTGGATTCGTCACCTTTGCATCCGAAGACGAAGCTCATACAGCACTGACCGAGATGAATGGAAAGCCTTTGAACGGAAGGGTTATTTTTGTGGACTATGCAAAACCAACATCCAATTTTCGTGGCGGAATTCCTATAGCGAGAGGACCTCCCGAGGAGAAAACTGAAGAATGATTGCTCAAAAAATTTTATGCGATGTCATTTATCGAAAAGAAATTAGCTGAAAAGGAAGGGAACAGTCCCTGTAGCTGTGCATGGGAAGTGTGATTCAGACATGTTCTTTCAGCAATTTGCTTCATGCCAGAGAAGTGTTAAAAGCTTCAGGAAAAAGAGGAAATTTCATCTAAAGAAAAAACAAACACACAAAGTAGCAAACCCAAAAAACCCAAAGGCCAAACACATCATATCTAAAGTCCCTTCTCTCCTCACCTTCATTTCTTTCCTTTCCTTTTTCTTCTCCATAAACTCCTCCAACTTTTTCCTCTCCCTTTTTCCCTTTTTACCCTCCATTGCCCTTTCCAAAATTACCAAACTATCCTTCCCATCCAAGAATGTTCCATCCATGTCCTCCACTTGCAAATTCACTTCCCTCACTTGCAAATTCCCTCCCTCCCATCCTCCGCACGTCACTGCAATCCCGCACTTCACGCACTCTGCCGCCGTTCCTCTCTCACCGCCTAACACGGTCGCGAATTGCACGTGCACCTCCCCGCTCAGCCAGTGCCGCTGCACGCTCACCGGTCGGTAACTCGACAGATTCATCGCCCGCCGTCCAGCGGCGTCGATCATGATCCAGCTTAAACTCAAATCCTCCGCAAGTTCCCGGCAAGTATTTCCGCCGCCGATTGGAAACTTAATCGGCGTTGGAACTACATCCTTAGGATCGAGCATATCGATTCGAAACGGCGAGCAACGGAACCATCCGGAGACGGTCTCTGTCTCGACGACTTTGCTGAAAATCATTTCTCCGCGGTAATAGATATCGACGGCGGAGATCAATTCCGGCGGAAGGTGGCGACGGCGCCGACGATGGCTGTAGGTCGCCGGCGACGGAGGAGAAGAGGTGGAAGTTTCGGAATTATAAGAGAGGCAAGGGAAGGAATCGGAGAAGAAGGACCGAGGACCGTCGGGAAATTCCGAAATCAAAGCGTCGAGGCGCTGCGTCGCCGTCGACGGCCACGTGGAGTGACAGATATCCCCCCAGAGGCTTGGCTCGGCGGTGAGGCGGTGAAGTTGCGATGAAGTGCAGGCGGCGGCGGCGAGGGCCGGTCCGTCGAGACGCGTCAAGATGTGAGTTCGGAGAATATCTGGATGGATGTCTGAAATAGAGGTGGTAGCGCTGTCACCGGCGGCGGAGGAGACCGCCGACGGGGAAAATGTCCGATTAGTTGACATTTTCTTGAATTTTTTGGGTTTTTGATCATTCGGAGGGAAAGTGGGATATT

Coding sequence (CDS)

ATGGAGGCGATCAGAAAAGCGATGGCAATATCCTCCAATCGTCATGTTCTTCCCTCTCTATTTACTCCGCCGTCTCGTCTCGTCTCTTTTAGAGGCATAGCTTCGAAGCTCTTTGTTGGTGGACTCTCATTTTACACTACAGACAAGGGACTGTCAGAAGCCTTTTCTCAGTACGGTCAGGTTGTTGAAGCTAAAGTCGTGACGGACAGAGTCTCTGATAAGTCAAAGGGATTTGGATTCGTCACCTTTGCATCCGAAGACGAAGCTCATACAGCACTGACCGAGATGAATGGAAAGCCTTTGAACGGAAGGGTTATTTTTGTGGACTATGCAAAACCAACATCCAATTTTCGTGGCGGAATTCCTATAGCGAGAGGACCTCCCGAGGAGAAAACTGAAGAATGA

Protein sequence

MEAIRKAMAISSNRHVLPSLFTPPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVDYAKPTSNFRGGIPIARGPPEEKTEE

Homology

[Close]

BLAST of CmUC10G199820 vs. NCBI nr
Match: XP_038903502.1 (small RNA-binding protein 11, chloroplastic [Benincasa hispida])

HSP 1 Score: 251.1 bits (640), Expect = 5.2e-63
Identity = 128/134 (95.52%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 1   MEAIRKAMAISSNRHVLPSLFTPPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQ 60
           MEAIRKAMAISSNR VLPSLFT PSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQ
Sbjct: 1   MEAIRKAMAISSNRCVLPSLFTLPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVDYAKPTSNFRGG 120
           VVEAKVV DRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVDYAKPTS FR G
Sbjct: 61  VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVDYAKPTSKFRSG 120

Query: 121 IPIARGPPEEKTEE 135
           IPIARGPPEEKT+E
Sbjct: 121 IPIARGPPEEKTDE 134

[Close]

BLAST of CmUC10G199820 vs. NCBI nr
Match: XP_023005174.1 (small RNA-binding protein 11, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 251.1 bits (640), Expect = 5.2e-63
Identity = 126/134 (94.03%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 1   MEAIRKAMAISSNRHVLPSLFTPPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQ 60
           M AIRKAMAISSNR VLPS+FTPPSRL+SFRGIASKLFVGGLSFYT+DKGLSEAFSQYGQ
Sbjct: 1   MAAIRKAMAISSNRCVLPSVFTPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVDYAKPTSNFRGG 120
           VVEAKVV DRVSDKSKGFGFVTFASEDEAHTALTEMNGK LNGRVIFVDYAKPTSNFRGG
Sbjct: 61  VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTSNFRGG 120

Query: 121 IPIARGPPEEKTEE 135
           IPIARGPPEEKT+E
Sbjct: 121 IPIARGPPEEKTDE 134

[Close]

BLAST of CmUC10G199820 vs. NCBI nr
Match: XP_023538908.1 (small RNA-binding protein 11, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 246.9 bits (629), Expect = 9.9e-62
Identity = 124/134 (92.54%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 1   MEAIRKAMAISSNRHVLPSLFTPPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQ 60
           M AIRKAMAISS+R VL SLF PPSRL+SFRGIASKLFVGGLSFYT+DKGLSEAFSQYGQ
Sbjct: 1   MAAIRKAMAISSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVDYAKPTSNFRGG 120
           VVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGK LNGRVIFVDYAKPT+NFRGG
Sbjct: 61  VVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120

Query: 121 IPIARGPPEEKTEE 135
           IPIARGPPEEKT+E
Sbjct: 121 IPIARGPPEEKTDE 134

[Close]

BLAST of CmUC10G199820 vs. NCBI nr
Match: XP_022933740.1 (small RNA-binding protein 11, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 245.7 bits (626), Expect = 2.2e-61
Identity = 123/134 (91.79%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 1   MEAIRKAMAISSNRHVLPSLFTPPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQ 60
           M AIRKAMA+SS+R VL SLF PPSRL+SFRGIASKLFVGGLSFYT+DKGLSEAFSQYGQ
Sbjct: 1   MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVDYAKPTSNFRGG 120
           VVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGK LNGRVIFVDYAKPT+NFRGG
Sbjct: 61  VVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120

Query: 121 IPIARGPPEEKTEE 135
           IPIARGPPEEKT+E
Sbjct: 121 IPIARGPPEEKTDE 134

[Close]

BLAST of CmUC10G199820 vs. NCBI nr
Match: KAG7028125.1 (Small RNA-binding protein 11, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 241.1 bits (614), Expect = 5.4e-60
Identity = 120/134 (89.55%), Postives = 128/134 (95.52%), Query Frame = 0


Query: 1   MEAIRKAMAISSNRHVLPSLFTPPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQ 60
           M AIRKAMA+SS+R VL SLF PPSRL+SFRGIASKLFVGGLSFYT+DKGL+EAFSQYGQ
Sbjct: 1   MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQ 60

Query: 61  VVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVDYAKPTSNFRGG 120
           VVEAKVV DRVSDKSKGFGFVTFAS+DEAHTALTEMNGK LNGRVIFVDYAKPT+NFRGG
Sbjct: 61  VVEAKVVMDRVSDKSKGFGFVTFASDDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120

Query: 121 IPIARGPPEEKTEE 135
           IPIARGPPEEKT+E
Sbjct: 121 IPIARGPPEEKTDE 134

[Close]

BLAST of CmUC10G199820 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.2e-33
Identity = 72/101 (71.29%), Postives = 83/101 (82.18%), Query Frame = 0


Query: 31  RGIASKLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVVTDRVSDKSKGFGFVTFASEDEAH 90
           RG+ASKLF+GGLSF TT++GLSEAFS+ GQVVEA++V DRVSD+SKGFGFVTFAS DEA 
Sbjct: 30  RGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQ 89

Query: 91  TALTEMNGKPLNGRVIFVDYAKPTSNF--RGGIPIARGPPE 130
            AL E NG+ LNGR IFVDYAK   +    GG PIARGPP+
Sbjct: 90  KALMEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPD 130

[Close]

BLAST of CmUC10G199820 vs. ExPASy Swiss-Prot
Match: Q9LIS2 (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.0e-20
Identity = 57/122 (46.72%), Postives = 79/122 (64.75%), Query Frame = 0


Query: 4   IRKAMAISSNRHVLPSLFTPPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQVVE 63
           +R+ ++ SSN  V        S L S R ++SKLFVGGLS+ T D  L +AF+ +G+V E
Sbjct: 11  LRQGVSQSSNGPV-------TSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTE 70

Query: 64  AKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVDYA-----KPTSNFR 121
           A V+ DR + +S+GFGFV+F+ ED A+ A+ EM+GK LNGR I V+ A      P S+F 
Sbjct: 71  ATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSAPRSSFG 125

[Close]

BLAST of CmUC10G199820 vs. ExPASy Swiss-Prot
Match: Q28IQ9 (Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.7e-19
Identity = 50/96 (52.08%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 36  KLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTE 95
           KLFVGGL+F TT++ L + FS+YGQV E  VV DR S +S+GFGFVTF + ++A  A+  
Sbjct: 7   KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66

Query: 96  MNGKPLNGRVIFVDYAKPTSN-----FRGGIPIARG 127
           MNGK ++GR I VD A  +SN     +RGG    RG
Sbjct: 67  MNGKSVDGRQIRVDQAGKSSNDRRGGYRGGSSGGRG 102

[Close]

BLAST of CmUC10G199820 vs. ExPASy Swiss-Prot
Match: P60826 (Cold-inducible RNA-binding protein OS=Cricetulus griseus OX=10029 GN=CIRBP PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 7.0e-18
Identity = 48/96 (50.00%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 36  KLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTE 95
           KLFVGGLSF T ++ L + FS+YGQ+ E  VV DR + +S+GFGFVTF + D+A  A+  
Sbjct: 7   KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 96  MNGKPLNGRVIFVDYAKPTSN-----FRGGIPIARG 127
           MNGK ++GR I VD A  +S+     +RGG    RG
Sbjct: 67  MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRG 102

[Close]

BLAST of CmUC10G199820 vs. ExPASy Swiss-Prot
Match: Q14011 (Cold-inducible RNA-binding protein OS=Homo sapiens OX=9606 GN=CIRBP PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 7.0e-18
Identity = 48/96 (50.00%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 36  KLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTE 95
           KLFVGGLSF T ++ L + FS+YGQ+ E  VV DR + +S+GFGFVTF + D+A  A+  
Sbjct: 7   KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 96  MNGKPLNGRVIFVDYAKPTSN-----FRGGIPIARG 127
           MNGK ++GR I VD A  +S+     +RGG    RG
Sbjct: 67  MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRG 102

[Close]

BLAST of CmUC10G199820 vs. ExPASy TrEMBL
Match: A0A6J1KYF3 (small RNA-binding protein 11, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111498283 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.5e-63
Identity = 126/134 (94.03%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 1   MEAIRKAMAISSNRHVLPSLFTPPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQ 60
           M AIRKAMAISSNR VLPS+FTPPSRL+SFRGIASKLFVGGLSFYT+DKGLSEAFSQYGQ
Sbjct: 1   MAAIRKAMAISSNRCVLPSVFTPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVDYAKPTSNFRGG 120
           VVEAKVV DRVSDKSKGFGFVTFASEDEAHTALTEMNGK LNGRVIFVDYAKPTSNFRGG
Sbjct: 61  VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTSNFRGG 120

Query: 121 IPIARGPPEEKTEE 135
           IPIARGPPEEKT+E
Sbjct: 121 IPIARGPPEEKTDE 134

[Close]

BLAST of CmUC10G199820 vs. ExPASy TrEMBL
Match: A0A6J1F5P0 (small RNA-binding protein 11, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111441037 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.1e-61
Identity = 123/134 (91.79%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 1   MEAIRKAMAISSNRHVLPSLFTPPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQ 60
           M AIRKAMA+SS+R VL SLF PPSRL+SFRGIASKLFVGGLSFYT+DKGLSEAFSQYGQ
Sbjct: 1   MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVDYAKPTSNFRGG 120
           VVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGK LNGRVIFVDYAKPT+NFRGG
Sbjct: 61  VVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120

Query: 121 IPIARGPPEEKTEE 135
           IPIARGPPEEKT+E
Sbjct: 121 IPIARGPPEEKTDE 134

[Close]

BLAST of CmUC10G199820 vs. ExPASy TrEMBL
Match: A0A5A7TKK4 (Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004160 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.4e-58
Identity = 117/134 (87.31%), Postives = 127/134 (94.78%), Query Frame = 0


Query: 1   MEAIRKAMAISSNRHVLPSLFTPPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQ 60
           MEAIRKA+AISSNR VLPSLF PPSRLVSFRGIA+KLFVGGLS+YTTDKGLSEAFSQYGQ
Sbjct: 1   MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVDYAKPTSNFRGG 120
           V+EA VV DRVSDKSKGFGFVTFAS DEAHTAL+EMNGKPLNGRVIFV+YAKPT++ RG 
Sbjct: 61  VIEATVVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGS 120

Query: 121 IPIARGPPEEKTEE 135
           IPIARGPPEEKT++
Sbjct: 121 IPIARGPPEEKTDK 134

[Close]

BLAST of CmUC10G199820 vs. ExPASy TrEMBL
Match: A0A1S3B7I3 (glycine-rich RNA-binding protein 4, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486638 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.4e-58
Identity = 117/134 (87.31%), Postives = 127/134 (94.78%), Query Frame = 0


Query: 1   MEAIRKAMAISSNRHVLPSLFTPPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQ 60
           MEAIRKA+AISSNR VLPSLF PPSRLVSFRGIA+KLFVGGLS+YTTDKGLSEAFSQYGQ
Sbjct: 1   MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVDYAKPTSNFRGG 120
           V+EA VV DRVSDKSKGFGFVTFAS DEAHTAL+EMNGKPLNGRVIFV+YAKPT++ RG 
Sbjct: 61  VIEATVVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGS 120

Query: 121 IPIARGPPEEKTEE 135
           IPIARGPPEEKT++
Sbjct: 121 IPIARGPPEEKTDK 134

[Close]

BLAST of CmUC10G199820 vs. ExPASy TrEMBL
Match: A0A0A0LE31 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G777670 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.5e-58
Identity = 116/134 (86.57%), Postives = 127/134 (94.78%), Query Frame = 0


Query: 1   MEAIRKAMAISSNRHVLPSLFTPPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQ 60
           MEAIRKAMAI+SNR VLPSLF PPSRLVS+RGIA+KLFVGGLS+YTTDKGLSEAFSQYGQ
Sbjct: 1   MEAIRKAMAITSNRRVLPSLFPPPSRLVSYRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVDYAKPTSNFRGG 120
           V+EA VV DRVSDKSKGFGFVTFAS DEAHTAL+EMNGKPLNGRVIFV+YAKPT++ RG 
Sbjct: 61  VIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKPLNGRVIFVNYAKPTTSSRGA 120

Query: 121 IPIARGPPEEKTEE 135
           IPIARGPPEEKT++
Sbjct: 121 IPIARGPPEEKTDK 134

[Close]

BLAST of CmUC10G199820 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 144.1 bits (362), Expect = 8.4e-35
Identity = 72/101 (71.29%), Postives = 83/101 (82.18%), Query Frame = 0


Query: 31  RGIASKLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVVTDRVSDKSKGFGFVTFASEDEAH 90
           RG+ASKLF+GGLSF TT++GLSEAFS+ GQVVEA++V DRVSD+SKGFGFVTFAS DEA 
Sbjct: 30  RGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQ 89

Query: 91  TALTEMNGKPLNGRVIFVDYAKPTSNF--RGGIPIARGPPE 130
            AL E NG+ LNGR IFVDYAK   +    GG PIARGPP+
Sbjct: 90  KALMEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPD 130

[Close]

BLAST of CmUC10G199820 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-21
Identity = 57/122 (46.72%), Postives = 79/122 (64.75%), Query Frame = 0


Query: 4   IRKAMAISSNRHVLPSLFTPPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQVVE 63
           +R+ ++ SSN  V        S L S R ++SKLFVGGLS+ T D  L +AF+ +G+V E
Sbjct: 11  LRQGVSQSSNGPV-------TSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTE 70

Query: 64  AKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVDYA-----KPTSNFR 121
           A V+ DR + +S+GFGFV+F+ ED A+ A+ EM+GK LNGR I V+ A      P S+F 
Sbjct: 71  ATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSAPRSSFG 125

[Close]

BLAST of CmUC10G199820 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-21
Identity = 57/122 (46.72%), Postives = 79/122 (64.75%), Query Frame = 0


Query: 4   IRKAMAISSNRHVLPSLFTPPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQVVE 63
           +R+ ++ SSN  V        S L S R ++SKLFVGGLS+ T D  L +AF+ +G+V E
Sbjct: 11  LRQGVSQSSNGPV-------TSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTE 70

Query: 64  AKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVDYA-----KPTSNFR 121
           A V+ DR + +S+GFGFV+F+ ED A+ A+ EM+GK LNGR I V+ A      P S+F 
Sbjct: 71  ATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSAPRSSFG 125

[Close]

BLAST of CmUC10G199820 vs. TAIR 10
Match: AT4G13850.4 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-19
Identity = 53/113 (46.90%), Postives = 74/113 (65.49%), Query Frame = 0


Query: 10  ISSNRHVLPSLFTPPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVVTD 69
           ISSN +V        S L S R +++KLF+GGLS+ T D  L +AF+ +G VV+AKV+ D
Sbjct: 15  ISSNGNV-----PVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVD 74

Query: 70  RVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVDYA--KPTSNFRGG 121
           R + +S+GFGFV F  E  A  A++EM+GK LNGR I V+ A  +P+  + GG
Sbjct: 75  RETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSGGYGGG 122

[Close]

BLAST of CmUC10G199820 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 93.2 bits (230), Expect = 1.7e-19
Identity = 43/89 (48.31%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 33  IASKLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVVTDRVSDKSKGFGFVTFASEDEAHTA 92
           I+++LFV  LS YTTD+ L + FS +GQ+ EA+++ D  + + KGFGF+TF SED+A  A
Sbjct: 5   ISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKA 64

Query: 93  LTEMNGKPLNGRVIFVDYAKPTSNFRGGI 122
           L  ++GK ++GR+IFV+ AK     R GI
Sbjct: 65  LKSLDGKIVDGRLIFVEVAKNAEEVRAGI 93

The following BLAST results are available for this feature:

BLAST of CmUC10G199820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903502.1	5.2e-63	95.52	small RNA-binding protein 11, chloroplastic [Benincasa hispida]	[more]
XP_023005174.1	5.2e-63	94.03	small RNA-binding protein 11, chloroplastic-like [Cucurbita maxima]	[more]
XP_023538908.1	9.9e-62	92.54	small RNA-binding protein 11, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022933740.1	2.2e-61	91.79	small RNA-binding protein 11, chloroplastic-like [Cucurbita moschata]	[more]
KAG7028125.1	5.4e-60	89.55	Small RNA-binding protein 11, chloroplastic [Cucurbita argyrosperma subsp. argyr...	[more]

BLAST of CmUC10G199820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FFZ6	1.2e-33	71.29	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
Q9LIS2	2.0e-20	46.72	Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q28IQ9	3.7e-19	52.08	Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 S...	[more]
P60826	7.0e-18	50.00	Cold-inducible RNA-binding protein OS=Cricetulus griseus OX=10029 GN=CIRBP PE=2 ...	[more]
Q14011	7.0e-18	50.00	Cold-inducible RNA-binding protein OS=Homo sapiens OX=9606 GN=CIRBP PE=1 SV=1	[more]

BLAST of CmUC10G199820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KYF3	2.5e-63	94.03	small RNA-binding protein 11, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1F5P0	1.1e-61	91.79	small RNA-binding protein 11, chloroplastic-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A5A7TKK4	1.4e-58	87.31	Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3B7I3	1.4e-58	87.31	glycine-rich RNA-binding protein 4, mitochondrial isoform X1 OS=Cucumis melo OX=...	[more]
A0A0A0LE31	2.5e-58	86.57	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G777670 PE=4 SV...	[more]

BLAST of CmUC10G199820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06210.1	8.4e-35	71.29	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G23830.1	1.4e-21	46.72	glycine-rich RNA-binding protein 4	[more]
AT3G23830.2	1.4e-21	46.72	glycine-rich RNA-binding protein 4	[more]
AT4G13850.4	1.3e-19	46.90	glycine-rich RNA-binding protein 2	[more]
AT3G46020.1	1.7e-19	48.31	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 36..109 e-value: 2.7E-28 score: 110.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 37..106 e-value: 2.7E-22 score: 78.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 35..113 score: 20.985703
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 32..131 e-value: 2.1E-30 score: 107.6
None	No IPR available	PANTHER	PTHR15241:SF335	GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL-LIKE	coord: 1..132
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 1..132
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 35..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC10G199820.1	CmUC10G199820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901002	positive regulation of response to salt stress
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding