CmUC10G195240 (gene) Watermelon (USVL531) v1

Overview
NameCmUC10G195240
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionUnknown protein
LocationCmU531Chr10: 26719402 .. 26719917 (+)
RNA-Seq ExpressionCmUC10G195240
SyntenyCmUC10G195240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTGACTCACTTTTAAAGTTAGGGTATGAGTGCAATAATGGAAGCAACTCTAATTTGACATTGACCTTTGACGCCAAGTGTCGAGGATTTTTCAACCAAATCGATTGAATTTGTTCTTCGAAAATTTGTGCATGGCCTTCGCCACAAGGTTTCTTCGCCCGCTCCCCAGAGCTTTGGTGTTCGCTTCGTCTTCATCTTCTTACTTCTTCAATCCCCCCAGATTCTGTATGTTTTATGCTATCTTTGCTTTCTAAACTTCCTTCCATTGTTTTTTGATTCCTTCCTTTCGTCTGATTGCTGTACTGTTCCCAATTTTAGGTTGTGTGAAATTTGAGCCCTTCAAATCGTTTCCCACGAACTTCGGATCATTACTCTGCAACCGCGTTTCTAATCGCGGACTTGCATTTTCTGGCGCTAAAGGAACTTATCAACGGAAGTCTCCTTTGATAGGCAAGCTTGAGTTCTTCAACTTTTCATATTCCCAATCATCTGCTGCATATCAAGTCTATCTGTAA

mRNA sequence

CTTTGACTCACTTTTAAAGTTAGGGTATGAGTGCAATAATGGAAGCAACTCTAATTTGACATTGACCTTTGACGCCAAGTGTCGAGGATTTTTCAACCAAATCGATTGAATTTGTTCTTCGAAAATTTGTGCATGGCCTTCGCCACAAGGTTTCTTCGCCCGCTCCCCAGAGCTTTGGTGTTCGCTTCGTCTTCATCTTCTTACTTCTTCAATCCCCCCAGATTCTGTTGTGTGAAATTTGAGCCCTTCAAATCGTTTCCCACGAACTTCGGATCATTACTCTGCAACCGCGTTTCTAATCGCGGACTTGCATTTTCTGGCGCTAAAGGAACTTATCAACGGAAGTCTCCTTTGATAGGCAAGCTTGAGTTCTTCAACTTTTCATATTCCCAATCATCTGCTGCATATCAAGTCTATCTGTAA

Coding sequence (CDS)

ATGGCCTTCGCCACAAGGTTTCTTCGCCCGCTCCCCAGAGCTTTGGTGTTCGCTTCGTCTTCATCTTCTTACTTCTTCAATCCCCCCAGATTCTGTTGTGTGAAATTTGAGCCCTTCAAATCGTTTCCCACGAACTTCGGATCATTACTCTGCAACCGCGTTTCTAATCGCGGACTTGCATTTTCTGGCGCTAAAGGAACTTATCAACGGAAGTCTCCTTTGATAGGCAAGCTTGAGTTCTTCAACTTTTCATATTCCCAATCATCTGCTGCATATCAAGTCTATCTGTAA

Protein sequence

MAFATRFLRPLPRALVFASSSSSYFFNPPRFCCVKFEPFKSFPTNFGSLLCNRVSNRGLAFSGAKGTYQRKSPLIGKLEFFNFSYSQSSAAYQVYL
Homology
[Close]
BLAST of CmUC10G195240 vs. NCBI nr
Match: XP_038903549.1 (uncharacterized protein LOC120090109 [Benincasa hispida])

HSP 1 Score: 128.3 bits (321), Expect = 3.7e-26
Identity = 63/76 (82.89%), Postives = 66/76 (86.84%), Query Frame = 0 

Query: 1  MAFATRFLRPLPRALVFASSSSSYFFNPPRFCCVKFEPFKSFPTNFGSLLCNRVSNRGLA 60
          MAFA +FLRPLPRA VFASSSSS FFNP RFCCVKF+ FKSFPTNFGSLLCNR+SN  LA
Sbjct: 1  MAFAPKFLRPLPRAFVFASSSSSSFFNPVRFCCVKFQHFKSFPTNFGSLLCNRISNFRLA 60

Query: 61 FSGAKGTYQRKSPLIG 77
          FSGA G Y RKSPLIG
Sbjct: 61 FSGANGIYLRKSPLIG 76

[Close]
BLAST of CmUC10G195240 vs. NCBI nr
Match: XP_004141102.1 (uncharacterized protein LOC101216879 [Cucumis sativus] >KGN59691.1 hypothetical protein Csa_001414 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 2.3e-20
Identity = 57/80 (71.25%), Postives = 61/80 (76.25%), Query Frame = 0 

Query: 1  MAFATRFLRPLPRALVFA----SSSSSYFFNPPRFCCVKFEPFKSFPTNFGSLLCNRVSN 60
          MAFA++FLRPLPRA VFA    SSSSS F NP RFCC KFEPFK FPTNFGS LCNR+ N
Sbjct: 1  MAFASKFLRPLPRAFVFASSSSSSSSSSFLNPARFCCAKFEPFKLFPTNFGSFLCNRLPN 60

Query: 61 RGLAFSGAKGTYQRKSPLIG 77
            LAFSGAKG Y    PL+G
Sbjct: 61 LRLAFSGAKGIY---LPLVG 77

[Close]
BLAST of CmUC10G195240 vs. NCBI nr
Match: TYK00818.1 (uncharacterized protein E5676_scaffold1545G00190 [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 6.7e-20
Identity = 57/77 (74.03%), Postives = 60/77 (77.92%), Query Frame = 0 

Query: 1  MAFATRFLRPLPRALVFA-SSSSSYFFNPPRFCCVKFEPFKSFPTNFGSLLCNRVSNRGL 60
          MAFA++FLRPLPRA VFA SSSSS  FNP RFCC KFEPF  FPTNFGS LCNR+ N  L
Sbjct: 1  MAFASKFLRPLPRAFVFASSSSSSSSFNPARFCCAKFEPFTLFPTNFGSFLCNRLPNLRL 60

Query: 61 AFSGAKGTYQRKSPLIG 77
          AFSGAKG Y    PLIG
Sbjct: 61 AFSGAKGIY---LPLIG 74

[Close]
BLAST of CmUC10G195240 vs. NCBI nr
Match: XP_008443551.1 (PREDICTED: uncharacterized protein LOC103487112 isoform X1 [Cucumis melo] >KAA0053647.1 uncharacterized protein E6C27_scaffold135G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 6.7e-20
Identity = 57/77 (74.03%), Postives = 60/77 (77.92%), Query Frame = 0 

Query: 1  MAFATRFLRPLPRALVFA-SSSSSYFFNPPRFCCVKFEPFKSFPTNFGSLLCNRVSNRGL 60
          MAFA++FLRPLPRA VFA SSSSS  FNP RFCC KFEPF  FPTNFGS LCNR+ N  L
Sbjct: 1  MAFASKFLRPLPRAFVFASSSSSSSSFNPARFCCAKFEPFTLFPTNFGSFLCNRLPNLRL 60

Query: 61 AFSGAKGTYQRKSPLIG 77
          AFSGAKG Y    PLIG
Sbjct: 61 AFSGAKGIY---LPLIG 74

[Close]
BLAST of CmUC10G195240 vs. NCBI nr
Match: XP_008443552.1 (PREDICTED: uncharacterized protein LOC103487112 isoform X2 [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 8.8e-20
Identity = 57/79 (72.15%), Postives = 61/79 (77.22%), Query Frame = 0 

Query: 1  MAFATRFLRPLPRALVFA-SSSSSYFFNPPRFCCVKFEPFKSFPTNFGSLLCNRVSNRGL 60
          MAFA++FLRPLPRA VFA SSSSS  FNP RFCC KFEPF  FPTNFGS LCNR+ N  L
Sbjct: 1  MAFASKFLRPLPRAFVFASSSSSSSSFNPARFCCAKFEPFTLFPTNFGSFLCNRLPNLRL 60

Query: 61 AFSGAKGTYQRKSPLIGKL 79
          AFSGAKG Y    PLI +L
Sbjct: 61 AFSGAKGIY---LPLIDRL 76

[Close]
BLAST of CmUC10G195240 vs. ExPASy TrEMBL
Match: A0A0A0LI06 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G838700 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.1e-20
Identity = 57/80 (71.25%), Postives = 61/80 (76.25%), Query Frame = 0 

Query: 1  MAFATRFLRPLPRALVFA----SSSSSYFFNPPRFCCVKFEPFKSFPTNFGSLLCNRVSN 60
          MAFA++FLRPLPRA VFA    SSSSS F NP RFCC KFEPFK FPTNFGS LCNR+ N
Sbjct: 1  MAFASKFLRPLPRAFVFASSSSSSSSSSFLNPARFCCAKFEPFKLFPTNFGSFLCNRLPN 60

Query: 61 RGLAFSGAKGTYQRKSPLIG 77
            LAFSGAKG Y    PL+G
Sbjct: 61 LRLAFSGAKGIY---LPLVG 77

[Close]
BLAST of CmUC10G195240 vs. ExPASy TrEMBL
Match: A0A5D3BP24 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00190 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.2e-20
Identity = 57/77 (74.03%), Postives = 60/77 (77.92%), Query Frame = 0 

Query: 1  MAFATRFLRPLPRALVFA-SSSSSYFFNPPRFCCVKFEPFKSFPTNFGSLLCNRVSNRGL 60
          MAFA++FLRPLPRA VFA SSSSS  FNP RFCC KFEPF  FPTNFGS LCNR+ N  L
Sbjct: 1  MAFASKFLRPLPRAFVFASSSSSSSSFNPARFCCAKFEPFTLFPTNFGSFLCNRLPNLRL 60

Query: 61 AFSGAKGTYQRKSPLIG 77
          AFSGAKG Y    PLIG
Sbjct: 61 AFSGAKGIY---LPLIG 74

[Close]
BLAST of CmUC10G195240 vs. ExPASy TrEMBL
Match: A0A5A7UGM7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G00180 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.2e-20
Identity = 57/77 (74.03%), Postives = 60/77 (77.92%), Query Frame = 0 

Query: 1  MAFATRFLRPLPRALVFA-SSSSSYFFNPPRFCCVKFEPFKSFPTNFGSLLCNRVSNRGL 60
          MAFA++FLRPLPRA VFA SSSSS  FNP RFCC KFEPF  FPTNFGS LCNR+ N  L
Sbjct: 1  MAFASKFLRPLPRAFVFASSSSSSSSFNPARFCCAKFEPFTLFPTNFGSFLCNRLPNLRL 60

Query: 61 AFSGAKGTYQRKSPLIG 77
          AFSGAKG Y    PLIG
Sbjct: 61 AFSGAKGIY---LPLIG 74

[Close]
BLAST of CmUC10G195240 vs. ExPASy TrEMBL
Match: A0A1S3B8A6 (uncharacterized protein LOC103487112 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487112 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.2e-20
Identity = 57/77 (74.03%), Postives = 60/77 (77.92%), Query Frame = 0 

Query: 1  MAFATRFLRPLPRALVFA-SSSSSYFFNPPRFCCVKFEPFKSFPTNFGSLLCNRVSNRGL 60
          MAFA++FLRPLPRA VFA SSSSS  FNP RFCC KFEPF  FPTNFGS LCNR+ N  L
Sbjct: 1  MAFASKFLRPLPRAFVFASSSSSSSSFNPARFCCAKFEPFTLFPTNFGSFLCNRLPNLRL 60

Query: 61 AFSGAKGTYQRKSPLIG 77
          AFSGAKG Y    PLIG
Sbjct: 61 AFSGAKGIY---LPLIG 74

[Close]
BLAST of CmUC10G195240 vs. ExPASy TrEMBL
Match: A0A1S3B8D2 (uncharacterized protein LOC103487112 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487112 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.2e-20
Identity = 57/79 (72.15%), Postives = 61/79 (77.22%), Query Frame = 0 

Query: 1  MAFATRFLRPLPRALVFA-SSSSSYFFNPPRFCCVKFEPFKSFPTNFGSLLCNRVSNRGL 60
          MAFA++FLRPLPRA VFA SSSSS  FNP RFCC KFEPF  FPTNFGS LCNR+ N  L
Sbjct: 1  MAFASKFLRPLPRAFVFASSSSSSSSFNPARFCCAKFEPFTLFPTNFGSFLCNRLPNLRL 60

Query: 61 AFSGAKGTYQRKSPLIGKL 79
          AFSGAKG Y    PLI +L
Sbjct: 61 AFSGAKGIY---LPLIDRL 76

The following BLAST results are available for this feature:
BLAST of CmUC10G195240 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038903549.13.7e-2682.89uncharacterized protein LOC120090109 [Benincasa hispida][more]
XP_004141102.12.3e-2071.25uncharacterized protein LOC101216879 [Cucumis sativus] >KGN59691.1 hypothetical ... [more]
TYK00818.16.7e-2074.03uncharacterized protein E5676_scaffold1545G00190 [Cucumis melo var. makuwa][more]
XP_008443551.16.7e-2074.03PREDICTED: uncharacterized protein LOC103487112 isoform X1 [Cucumis melo] >KAA00... [more]
XP_008443552.18.8e-2072.15PREDICTED: uncharacterized protein LOC103487112 isoform X2 [Cucumis melo][more]
BLAST of CmUC10G195240 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC10G195240 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LI061.1e-2071.25Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G838700 PE=4 SV=1[more]
A0A5D3BP243.2e-2074.03Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UGM73.2e-2074.03Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3B8A63.2e-2074.03uncharacterized protein LOC103487112 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3B8D24.2e-2072.15uncharacterized protein LOC103487112 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
BLAST of CmUC10G195240 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC10G195240.1CmUC10G195240.1mRNA