CmUC10G193430 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC10G193430
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	structure-specific endonuclease subunit slx1
Location	CmU531Chr10: 24540385 .. 24544880 (+)
RNA-Seq Expression	CmUC10G193430
Synteny	CmUC10G193430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTTAGAAAAAAGAAATTAACTGTCAACCAAACGGCCAGTTTCGAACCCACGCCAAAGAAGAGGAATGAAAGAAAGAATATGAGACTGCTCTCTCACACATTTCGTTGCCAAAAACCCCCAATCTCAAATCCACAACTTTCCAAATCTTCTTCTTCCTCAAATAAGGATCTAACACTCGTCGTCAAATCAGAGCCGAAGCCGAACCCGAAGCAATGGTGTGTGTATCTCATCATCTCCTCCAATTCCCCCATCAAAACCTATGTAGGCGTCACCCTCGACTTGGATCGACGGTATCTCGAATTTCTTCCTTTCCGTTTCTTGTTCGAACCACCGATTCCATGATTTGATGTGTGAAAATTTATCTGGGTCATGTTCGATTGGCCTTAAAAAGTGATATTTCGTGCTTTTAGCTTAGACATTTAGCTTGGTATTGTTTAATCATCAATTCAATCCAAAATATTAAAAAACAGATAGGTTATGGTAAATTGAATAATTTATTTAATACCTTGTTGCTGTTGTTGTGGGCTTGAAAGGTTGCACAAGGTGCAAGAAATTGTTGTACGAATGATCCCAATTTCACGGCGGAAATGTTGTTGAGCCATACTTTGAAAATAAGGATGTACAACCTTTTGCTTGCGTCACTCCCTCGCATTGGTGTTCGTCCTCCCTCCTTGCATTCGACTAATCCAATACAACAGTTTCCTCACACACTAGGTCTTTTCCTCCCCCACTCTCTCTACTCTTCCTCTCTTTCACTCACGCTCGTCACTCTGAAAAAAAGTGTTGGCAAGCGGTTTGTGGCATCATCAAAAGTTTATTCTTCATTGTTTTCAAAACTTGGGTCAAACACATTTTAGGCGTGGTATTTGAGTCATTTGTACGAAAATCTTAAAAGTCCAAAGAGTGGTAATCGTTGTTAAGTGAAGAGGAAATGACATTACACAAGTTCGAGATTTCCTACTATATCATGTTTCATCGCCAATTAAAAAGCTTAAGCTTGCATTGGTGGTTTATGGTGGTTTTAATATTTTATCAATACTATAGAGCACGTAACTAAACTTGAGTCACAATTTGGTGCATGAAGATGAGGTTGGTCATTGAAAAAGAACTTTGGGTTAGCTGTTGAACTGCTCGATTAATCGGTTGAGGTATTGATTTTCAGTAGAGTTTGTAAGTTAGGGAGTGTTTTGGGATGATATTCATATTGTTGAGAAGTTATGTTATGAGAGGATAGTGGAGGTTGAGGGCAGAGAAGTTTCAATAATTGTGAATATGCGTCTGACTTAAAGTCAATAATCAATTCTGAAAAATGAAGTACTGTTCAAGATGTTTCATGGTTCTTATCAAGAGATATGCTTTAAATGTAAGAGATATGCTTTAAATGTTTTTTTAACTCCAGATCCTATCCTCTAGTGAATTCAATTGCCAAAGAAATTTGCACTTTGCAACTTTTAGATGTCCTTTATGTGTAAGAGGTATTCAAATATTACTTAACGTCATAAAGTTGTATTCTTGTACAGTTTGAAACAACATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCGAGCGGGACGACCCTGGCTTTGCGCATGCACAATTCATGGTTTTAAAGACCAAAGTCAAGGTATCCATTCAAAATAGAACTTCTAGAATCATGCTGCAAGTTGGGCTCCAATTTCAAGGGCATTGCTTGATTGTTTGTAGTCATTCTAGACATTATGTTTCCTTGGGCTTTTGAAAACATGAGACATTACCTTGTTTCTTTGTTGTGGCAGTGATCCTGCTAAGTTAGATGGCAATGGTCAGATGTATTTCATATTTTACGGCACTGTGAGAACTATTTCCTTGAGGAACAATCTTTATTCAATGATCTACCTCAATATTTATTATAAGATGCATCCTAATCACCATAAGTTGGCCTTGTGATTAAAAAGGACCATGTAAATAATAAAGACCTTAGAGGGAATAGGTTTCAATCATGATGGTCACCTACTGAGGATTTAATGTCCTATGAGTTACCTTGGCAACCAAAGTAGTAGGATTAGGTAGCTTTTCTGTGAAAATAGTATAGATGCGTGTAAGCTAGCTTGAAAGATCATGAATATTTAAATAAATAAATAAAAATAATAAATAATAAAACTTTTACATTTTCTTAGAAGCCTGAAAATACTTTACGTGGAGGAGAGAAACCTGATAGCATTCCTCCTCCTAAATCCTTATATAAATGCGATGTTTTCCTTTTTGATAAGTATAAAGAAATAGTAGAATCAAGGCCAGAGAAGATTTCCCTGGTGAGTGGATCTGTAAGTACAGCAGAAAACTGTCCTAGAAGAGCCACAATTCTTGAAGGATATGTGCCGAGTGTGGAAATACTTGGTACTTGCAGTTGAAGAAGTGATGGGGGCAGAGGGAGGCAAAAGATAACGTGGTGACTTGGGATTTCATTTCATACTCCAAAAGACACTAGGAATAAGAAGAAATTTTAGATCATCACGCCGAAACACCCTAAAATTTTAACTCATCATAAAAGGTTGAAAATTTGCTTTCTGTTCATGATACAAATATAAATTCATCCAAGGTTGAAGGCGCTACTCTAGTCGGTAGACCAGCAAAGCAAGTGCCGCAAGACCCTGTGCCAGAATACCGTAGGCATACATTCTGGTATCTGAAACTTCTTATCCTAGCAACATAACTAGAAGTAATAATGAGACTGAAAATATATTGGCAAACACACAATGTAGTATGCGATATTTGAGACTGAAAATAGGAAAATATATTATGTAGTATGCAGCATTTGAACTGTTTGGTACTCTTAAGTTCTTAATTGGCCCCCCAAAACAACATTGGTAATTGGAGTAGGAGTTGAACATTTCTAAATTAAGGGTGCATATCTGGCTGGAAACTAACCTCCTAATCTTGAACTATATAACGGTGCAACCTGCGAGTTAAGAGTATTTAGGAGTGAGATCAGGACAGAGATAGGAAACTCTTGGATACTCCCTTAGCTACACATTCTTTAATAATTAAACGGTTGCTATCATTTTTTCCCCCATAAAGTAGAGATCTAGAAACAAGCTCATGAATTTCGTTAATATCTATGAGAGGAGCACGAATGAATGCAATAATAAATACAGACACTGATAAGATTATAGTGGAATTCTTTTTCCCTGTTTGGGAAAGGAACACAAATTTTGCAGGTGAATTGGTAAAGGACAGTTTCAGGGCTCCATAATCCATGCCCCAAATTTGTGTAATACACCAGCCATGATATTTATGATTTCCATGGATGAGACAACTACATGCATAAGTATTGCTGTTTGGATTGACTTATTTATGCAAATAAACAGACTTATTCAATATATTTTTACAGCTTGCATATTGCAACCGGCATTCCTCTTGCTTGTCTATTTGGTTAATCATCAGCTCTCAAATTATATGCATGTTAAGACTCATACCTACCAAATTTGGCCTTCCATCTTTGGTGTATTTAGTTTTTTTTTCCTTTAGAAATGAAAAAAGCCGCAACTTTCAGATCACCATGGTATCCCATTTATCATCACATGGCATTGGAAGGGGTGTAGTTCAGAGTGCTATTATTGCTAACGAGGCAAATGAAGTAATTGAAAAGATTTCTAGTACTCTCATAGTACTATAATCCATTTGTTCCCGCTATAAATTGGTCTTCATAAATGTTAGTGGACCCACTCTATTTAAAAAAAAAATTAAAAAACGTGCTGATGTGGCACACTATAAATAGAGGGAGGTATGGAAAATTTTCTACACTCCCGTAGTATAGGAAATCTTCCCAACTCGTTGTCATCATCTGGATGACTTTTGGCAAGAAGTAACCCGTATTACTGACTGTGGAACTTAAATCGTCGAGTTTCACTTGTGTTTGTTGATTGTATGTTATGGATGGGGTGCTGAATTAATTTGATGAAGATCTTGTTTCTGGTTGAATTTATGATTTATATAGTTGTTGCTATGAGCATTCTTCAAGTTCATGTCCCTAAATCATTCCTAAGAAATTTTATCGACACAATGACTTTTATTTGAAATCTTATACTAAGTTTTATTTGGTTCAACCCAATAATCGAATTCTCGAGTTTTTCGACCAGAAATGTTCTGTAAAATCATTCCCACCTCATTACTGATGCTGTTTTTGTATCTTTTATATGCAGCTTGTGAGTTTGAAACGAAATGGAAAGAAGTTTCAAGGAAAATATCCTATAAGAAGAAGGATGATATGGGAAAGCAAGTAGATGATCAAACAATAAGGTTGCTCAAGCACAGGCAAAGAGCTCTGGGAAAAGTGAAATGTTTGTTTGATTGCAGTCAATTTGAGTTTGATTGGAAACTGGATCCTTTCTGATTCTTTACATGGGTTGGGGTTTTTCTTTTTCTTTTACCATATTTATATATTTATCTTCAATTTTATGAATTAATGATTGTTTATAAGATAAATGTCTAATGTTTAAAATTGTGTTAAAA

mRNA sequence

TATTTAGAAAAAAGAAATTAACTGTCAACCAAACGGCCAGTTTCGAACCCACGCCAAAGAAGAGGAATGAAAGAAAGAATATGAGACTGCTCTCTCACACATTTCGTTGCCAAAAACCCCCAATCTCAAATCCACAACTTTCCAAATCTTCTTCTTCCTCAAATAAGGATCTAACACTCGTCGTCAAATCAGAGCCGAAGCCGAACCCGAAGCAATGGTGTGTGTATCTCATCATCTCCTCCAATTCCCCCATCAAAACCTATGTAGGCGTCACCCTCGACTTGGATCGACGTGATCCTGCTAAGTTAGATGGCAATGGTCAGATGTATTTCATATTTTACGGCACTAAAACTGTCCTAGAAGAGCCACAATTCTTGAAGGATATGTGCCGAGTGTGGAAATACTTGGTTGAAGGCGCTACTCTAGTCGGTAGACCAGCAAAGCAAGTGCCGCAAGACCCTGTGCCAGAATACCCTTGTGAGTTTGAAACGAAATGGAAAGAAGTTTCAAGGAAAATATCCTATAAGAAGAAGGATGATATGGGAAAGCAAGTAGATGATCAAACAATAAGGTTGCTCAAGCACAGGCAAAGAGCTCTGGGAAAAGTGAAATGTTTGTTTGATTGCAGTCAATTTGAGTTTGATTGGAAACTGGATCCTTTCTGATTCTTTACATGGGTTGGGGTTTTTCTTTTTCTTTTACCATATTTATATATTTATCTTCAATTTTATGAATTAATGATTGTTTATAAGATAAATGTCTAATGTTTAAAATTGTGTTAAAA

Coding sequence (CDS)

ATGAGACTGCTCTCTCACACATTTCGTTGCCAAAAACCCCCAATCTCAAATCCACAACTTTCCAAATCTTCTTCTTCCTCAAATAAGGATCTAACACTCGTCGTCAAATCAGAGCCGAAGCCGAACCCGAAGCAATGGTGTGTGTATCTCATCATCTCCTCCAATTCCCCCATCAAAACCTATGTAGGCGTCACCCTCGACTTGGATCGACGTGATCCTGCTAAGTTAGATGGCAATGGTCAGATGTATTTCATATTTTACGGCACTAAAACTGTCCTAGAAGAGCCACAATTCTTGAAGGATATGTGCCGAGTGTGGAAATACTTGGTTGAAGGCGCTACTCTAGTCGGTAGACCAGCAAAGCAAGTGCCGCAAGACCCTGTGCCAGAATACCCTTGTGAGTTTGAAACGAAATGGAAAGAAGTTTCAAGGAAAATATCCTATAAGAAGAAGGATGATATGGGAAAGCAAGTAGATGATCAAACAATAAGGTTGCTCAAGCACAGGCAAAGAGCTCTGGGAAAAGTGAAATGTTTGTTTGATTGCAGTCAATTTGAGTTTGATTGGAAACTGGATCCTTTCTGA

Protein sequence

MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLKDMCRVWKYLVEGATLVGRPAKQVPQDPVPEYPCEFETKWKEVSRKISYKKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF

Homology

[Close]

BLAST of CmUC10G193430 vs. NCBI nr
Match: XP_004151512.1 (structure-specific endonuclease subunit SLX1 [Cucumis sativus] >KGN58557.1 hypothetical protein Csa_001754 [Cucumis sativus])

HSP 1 Score: 224.2 bits (570), Expect = 9.9e-55
Identity = 127/198 (64.14%), Postives = 139/198 (70.20%), Query Frame = 0


Query: 1   MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKT 60
           MRLLSHTFRC KPPISNP LSKSSSSS+KD TL+VKSEPKP  KQWCVYLIISSNSPIKT
Sbjct: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60

Query: 61  YVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLKDMCRVWKYLVEGATLVGRP- 120
           YVGVTLD DRR       NG+   I  G K                      AT  GRP 
Sbjct: 61  YVGVTLDFDRR---LKQHNGE---IKGGAK----------------------ATRAGRPW 120

Query: 121 --AKQVPQDPVPEYPCEFETKWKEVSRKISY-KKKDDMGKQVDDQTIRLLKHRQRALGKV 180
             A  +         CEFE+KWK+VSRKISY KK++D+GK +DDQT+RLLKHR+RALGKV
Sbjct: 121 ICACTIHGFKDQSQACEFESKWKKVSRKISYEKKEEDVGKLLDDQTLRLLKHRERALGKV 170

Query: 181 KCLFDCSQFEFDWKLDPF 195
           KCLFDCSQFEFDWKLDPF
Sbjct: 181 KCLFDCSQFEFDWKLDPF 170

[Close]

BLAST of CmUC10G193430 vs. NCBI nr
Match: XP_038903984.1 (structure-specific endonuclease subunit slx1 isoform X1 [Benincasa hispida])

HSP 1 Score: 215.3 bits (547), Expect = 4.6e-52
Identity = 129/198 (65.15%), Postives = 135/198 (68.18%), Query Frame = 0


Query: 1   MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKT 60
           MRLLS TFR QKP  SN QLSKSSSSS KD  L+VKSEPK  PKQWCVYLIISSNSPIKT
Sbjct: 1   MRLLSQTFRTQKPSNSNSQLSKSSSSSTKDPILIVKSEPK--PKQWCVYLIISSNSPIKT 60

Query: 61  YVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLKDMCRVWKYLVEGATLVGRP- 120
           YVGVTLD DRR       NG+   I  G K                      AT  GRP 
Sbjct: 61  YVGVTLDFDRR---LKQHNGE---IKGGAK----------------------ATRTGRPW 120

Query: 121 --AKQVPQDPVPEYPCEFETKWKEVSRKISYKKK-DDMGKQVDDQTIRLLKHRQRALGKV 180
             A  +         CEFE+KWKEVSRKISYKKK DDMGKQVDDQT+RLLKHRQRALGKV
Sbjct: 121 LCACTIHGFKDQGQACEFESKWKEVSRKISYKKKEDDMGKQVDDQTLRLLKHRQRALGKV 168

Query: 181 KCLFDCSQFEFDWKLDPF 195
           KCLFDCSQFEF+WKLDPF
Sbjct: 181 KCLFDCSQFEFNWKLDPF 168

[Close]

BLAST of CmUC10G193430 vs. NCBI nr
Match: XP_008461838.1 (PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo] >XP_008461839.1 PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo])

HSP 1 Score: 213.8 bits (543), Expect = 1.3e-51
Identity = 124/198 (62.63%), Postives = 136/198 (68.69%), Query Frame = 0


Query: 1   MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKT 60
           MRLLS TFRCQKPPISNP+L KSSSSS K  TL+VK E +P PKQWCVYLIISSNSPIKT
Sbjct: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLE-EPKPKQWCVYLIISSNSPIKT 60

Query: 61  YVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLKDMCRVWKYLVEGATLVGRP- 120
           YVGVTLD DRR       NG+   I  G K                      AT  GRP 
Sbjct: 61  YVGVTLDFDRR---LKQHNGE---IKGGAK----------------------ATQAGRPW 120

Query: 121 --AKQVPQDPVPEYPCEFETKWKEVSRKISY-KKKDDMGKQVDDQTIRLLKHRQRALGKV 180
             A  +         CEFE+KWK+VSRKISY KK+DD+GKQ+D+QT+RLLKHRQRALGKV
Sbjct: 121 ICACTIHGFKDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKV 169

Query: 181 KCLFDCSQFEFDWKLDPF 195
           KCLFDCS FEFDWKLDPF
Sbjct: 181 KCLFDCSHFEFDWKLDPF 169

[Close]

BLAST of CmUC10G193430 vs. NCBI nr
Match: XP_022982643.1 (structure-specific endonuclease subunit slx1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 177.6 bits (449), Expect = 1.1e-40
Identity = 108/197 (54.82%), Postives = 127/197 (64.47%), Query Frame = 0


Query: 1   MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKT 60
           MRLLS TFR QK PIS+P++SKSSSSS K  TL +KSEP+   K+WCVYLIISSN PIKT
Sbjct: 1   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLTIKSEPE--TKKWCVYLIISSNPPIKT 60

Query: 61  YVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLKDMCRVWKYLVEGATLVGRP- 120
           YVGVTLD DRR       NG+   I  G K                      AT  GRP 
Sbjct: 61  YVGVTLDFDRR---LKQHNGE---IKGGAK----------------------ATRAGRPW 120

Query: 121 --AKQVPQDPVPEYPCEFETKWKEVSRKISYKKKDDMGKQVDDQTIRLLKHRQRALGKVK 180
             A ++         CEFE+KWKE+ RK+S+ +K+    +VDDQT+RLLK RQRALGKVK
Sbjct: 121 ICACKIHGFKNQSQACEFESKWKEICRKMSHMRKE----EVDDQTLRLLKQRQRALGKVK 163

Query: 181 CLFDCSQFEFDWKLDPF 195
            LFDC+QFEFDW+LDPF
Sbjct: 181 GLFDCTQFEFDWELDPF 163

[Close]

BLAST of CmUC10G193430 vs. NCBI nr
Match: XP_022934184.1 (structure-specific endonuclease subunit slx1 [Cucurbita moschata])

HSP 1 Score: 175.6 bits (444), Expect = 4.1e-40
Identity = 107/196 (54.59%), Postives = 126/196 (64.29%), Query Frame = 0


Query: 1   MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKT 60
           MRLLS TFR QK PIS+P++SKSSSSS K  TL+VKSEP+  PK+WCVYLIISSN PIKT
Sbjct: 1   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPE--PKKWCVYLIISSNPPIKT 60

Query: 61  YVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLKDMCRVWKYLVEGATLVGRP- 120
           YVGVTLD DRR       NG+   I  G K                      AT  GRP 
Sbjct: 61  YVGVTLDFDRR---LKQHNGE---IKGGAK----------------------ATRAGRPW 120

Query: 121 --AKQVPQDPVPEYPCEFETKWKEVSRKISYKKKDDMGKQVDDQTIRLLKHRQRALGKVK 180
             A ++         CEFE+KWKE+ RK+ + +K+    +VDD T+RLLK RQRALGKVK
Sbjct: 121 ICACKIHGFKDQSQACEFESKWKEICRKMCHMRKE----EVDDVTLRLLKQRQRALGKVK 162

Query: 181 CLFDCSQFEFDWKLDP 194
            LFDC+QFEFDW+LDP
Sbjct: 181 GLFDCTQFEFDWELDP 162

[Close]

BLAST of CmUC10G193430 vs. ExPASy TrEMBL
Match: A0A0A0LCZ9 (GIY-YIG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G683170 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 4.8e-55
Identity = 127/198 (64.14%), Postives = 139/198 (70.20%), Query Frame = 0


Query: 1   MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKT 60
           MRLLSHTFRC KPPISNP LSKSSSSS+KD TL+VKSEPKP  KQWCVYLIISSNSPIKT
Sbjct: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60

Query: 61  YVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLKDMCRVWKYLVEGATLVGRP- 120
           YVGVTLD DRR       NG+   I  G K                      AT  GRP 
Sbjct: 61  YVGVTLDFDRR---LKQHNGE---IKGGAK----------------------ATRAGRPW 120

Query: 121 --AKQVPQDPVPEYPCEFETKWKEVSRKISY-KKKDDMGKQVDDQTIRLLKHRQRALGKV 180
             A  +         CEFE+KWK+VSRKISY KK++D+GK +DDQT+RLLKHR+RALGKV
Sbjct: 121 ICACTIHGFKDQSQACEFESKWKKVSRKISYEKKEEDVGKLLDDQTLRLLKHRERALGKV 170

Query: 181 KCLFDCSQFEFDWKLDPF 195
           KCLFDCSQFEFDWKLDPF
Sbjct: 181 KCLFDCSQFEFDWKLDPF 170

[Close]

BLAST of CmUC10G193430 vs. ExPASy TrEMBL
Match: A0A1S3CFH5 (structure-specific endonuclease subunit slx1 OS=Cucumis melo OX=3656 GN=LOC103500344 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 6.5e-52
Identity = 124/198 (62.63%), Postives = 136/198 (68.69%), Query Frame = 0


Query: 1   MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKT 60
           MRLLS TFRCQKPPISNP+L KSSSSS K  TL+VK E +P PKQWCVYLIISSNSPIKT
Sbjct: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLE-EPKPKQWCVYLIISSNSPIKT 60

Query: 61  YVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLKDMCRVWKYLVEGATLVGRP- 120
           YVGVTLD DRR       NG+   I  G K                      AT  GRP 
Sbjct: 61  YVGVTLDFDRR---LKQHNGE---IKGGAK----------------------ATQAGRPW 120

Query: 121 --AKQVPQDPVPEYPCEFETKWKEVSRKISY-KKKDDMGKQVDDQTIRLLKHRQRALGKV 180
             A  +         CEFE+KWK+VSRKISY KK+DD+GKQ+D+QT+RLLKHRQRALGKV
Sbjct: 121 ICACTIHGFKDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKV 169

Query: 181 KCLFDCSQFEFDWKLDPF 195
           KCLFDCS FEFDWKLDPF
Sbjct: 181 KCLFDCSHFEFDWKLDPF 169

[Close]

BLAST of CmUC10G193430 vs. ExPASy TrEMBL
Match: A0A6J1J5C9 (structure-specific endonuclease subunit slx1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481456 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 5.2e-41
Identity = 108/197 (54.82%), Postives = 127/197 (64.47%), Query Frame = 0


Query: 1   MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKT 60
           MRLLS TFR QK PIS+P++SKSSSSS K  TL +KSEP+   K+WCVYLIISSN PIKT
Sbjct: 1   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLTIKSEPE--TKKWCVYLIISSNPPIKT 60

Query: 61  YVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLKDMCRVWKYLVEGATLVGRP- 120
           YVGVTLD DRR       NG+   I  G K                      AT  GRP 
Sbjct: 61  YVGVTLDFDRR---LKQHNGE---IKGGAK----------------------ATRAGRPW 120

Query: 121 --AKQVPQDPVPEYPCEFETKWKEVSRKISYKKKDDMGKQVDDQTIRLLKHRQRALGKVK 180
             A ++         CEFE+KWKE+ RK+S+ +K+    +VDDQT+RLLK RQRALGKVK
Sbjct: 121 ICACKIHGFKNQSQACEFESKWKEICRKMSHMRKE----EVDDQTLRLLKQRQRALGKVK 163

Query: 181 CLFDCSQFEFDWKLDPF 195
            LFDC+QFEFDW+LDPF
Sbjct: 181 GLFDCTQFEFDWELDPF 163

[Close]

BLAST of CmUC10G193430 vs. ExPASy TrEMBL
Match: A0A6J1F1V2 (structure-specific endonuclease subunit slx1 OS=Cucurbita moschata OX=3662 GN=LOC111441428 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 2.0e-40
Identity = 107/196 (54.59%), Postives = 126/196 (64.29%), Query Frame = 0


Query: 1   MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSEPKPNPKQWCVYLIISSNSPIKT 60
           MRLLS TFR QK PIS+P++SKSSSSS K  TL+VKSEP+  PK+WCVYLIISSN PIKT
Sbjct: 1   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPE--PKKWCVYLIISSNPPIKT 60

Query: 61  YVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLKDMCRVWKYLVEGATLVGRP- 120
           YVGVTLD DRR       NG+   I  G K                      AT  GRP 
Sbjct: 61  YVGVTLDFDRR---LKQHNGE---IKGGAK----------------------ATRAGRPW 120

Query: 121 --AKQVPQDPVPEYPCEFETKWKEVSRKISYKKKDDMGKQVDDQTIRLLKHRQRALGKVK 180
             A ++         CEFE+KWKE+ RK+ + +K+    +VDD T+RLLK RQRALGKVK
Sbjct: 121 ICACKIHGFKDQSQACEFESKWKEICRKMCHMRKE----EVDDVTLRLLKQRQRALGKVK 162

Query: 181 CLFDCSQFEFDWKLDP 194
            LFDC+QFEFDW+LDP
Sbjct: 181 GLFDCTQFEFDWELDP 162

[Close]

BLAST of CmUC10G193430 vs. ExPASy TrEMBL
Match: A0A6J1DGL6 (structure-specific endonuclease subunit SLX1 OS=Momordica charantia OX=3673 GN=LOC111020266 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.3e-36
Identity = 107/201 (53.23%), Postives = 123/201 (61.19%), Query Frame = 0


Query: 1   MRLLSHTFRCQKPPISNPQLSKSSSSSNKD---LTLVVKSEPKPNPKQWCVYLIISSNSP 60
           MRLLSHTFRC K PISNP+   SSSSS KD    TL  +S+ KP P  WCVYLIISSNSP
Sbjct: 33  MRLLSHTFRCHKSPISNPK--PSSSSSTKDPSAATLSFESQLKPKP--WCVYLIISSNSP 92

Query: 61  IKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLKDMCRVWKYLVEGATLVG 120
            KTYVGVTL+  RR       NG+   I  G K                      AT  G
Sbjct: 93  FKTYVGVTLNFSRR---LKQHNGE---IKGGAK----------------------ATRAG 152

Query: 121 RP---AKQVPQDPVPEYPCEFETKWKEVSRKISYK-KKDDMGKQVDDQTIRLLKHRQRAL 180
           RP   A  +         CEFE+KWKEVSRKI++K KKDD  +Q D+Q +RLLK+RQRAL
Sbjct: 153 RPWVCACMIHGFKDQSQACEFESKWKEVSRKIAHKRKKDDEEEQADEQKLRLLKNRQRAL 201

Query: 181 GKVKCLFDCSQFEFDWKLDPF 195
            KVK +FDCS+FEFD +LDPF
Sbjct: 213 EKVKFMFDCSRFEFDGQLDPF 201

[Close]

BLAST of CmUC10G193430 vs. TAIR 10
Match: AT5G43210.1 (Excinuclease ABC, C subunit, N-terminal )

HSP 1 Score: 88.2 bits (217), Expect = 7.9e-18
Identity = 70/199 (35.18%), Postives = 94/199 (47.24%), Query Frame = 0


Query: 2   RLLSHTFRCQKPPISNPQLS--KSSSSSNKDLTLVVKSEPK-----PNPKQWCVYLIISS 61
           RLLS TF   K   SNP+    K+  +S   + +   S P+     P  K W VYLI+S+
Sbjct: 3   RLLSRTFPSVKLRDSNPKAPEFKNLKNSQTQVPIPSSSSPQENSKIPKSKSWSVYLILST 62

Query: 62  NSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLKDMCRVW--KYLVEG 121
             PIKTYVG+T D  RR       NG+   I  G K             R W    ++ G
Sbjct: 63  TEPIKTYVGITTDFSRR---LKQHNGE---IRGGAKA--------SSAGRPWLCACIITG 122

Query: 122 ATLVGRPAKQVPQDPVPEYPCEFETKWKEVSRKISYKKKDDMGKQVDDQTIRLLKHRQRA 181
            T + + +              FE+KWK  +RK+  +KKD+   Q D     LL+HR+RA
Sbjct: 123 FTCLSQAS-------------SFESKWKIFTRKLPRRKKDEDMSQSD----ALLQHRRRA 170

Query: 182 LGKVKCLFDCSQFEFDWKL 192
           L KV+   DCS  E DWK+
Sbjct: 183 LNKVEESLDCSYLETDWKI 170

The following BLAST results are available for this feature:

BLAST of CmUC10G193430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151512.1	9.9e-55	64.14	structure-specific endonuclease subunit SLX1 [Cucumis sativus] >KGN58557.1 hypot...	[more]
XP_038903984.1	4.6e-52	65.15	structure-specific endonuclease subunit slx1 isoform X1 [Benincasa hispida]	[more]
XP_008461838.1	1.3e-51	62.63	PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo] >XP_00846...	[more]
XP_022982643.1	1.1e-40	54.82	structure-specific endonuclease subunit slx1 isoform X1 [Cucurbita maxima]	[more]
XP_022934184.1	4.1e-40	54.59	structure-specific endonuclease subunit slx1 [Cucurbita moschata]	[more]

BLAST of CmUC10G193430 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC10G193430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCZ9	4.8e-55	64.14	GIY-YIG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G683170 PE=...	[more]
A0A1S3CFH5	6.5e-52	62.63	structure-specific endonuclease subunit slx1 OS=Cucumis melo OX=3656 GN=LOC10350...	[more]
A0A6J1J5C9	5.2e-41	54.82	structure-specific endonuclease subunit slx1 isoform X1 OS=Cucurbita maxima OX=3...	[more]
A0A6J1F1V2	2.0e-40	54.59	structure-specific endonuclease subunit slx1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1DGL6	1.3e-36	53.23	structure-specific endonuclease subunit SLX1 OS=Momordica charantia OX=3673 GN=L...	[more]

BLAST of CmUC10G193430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43210.1	7.9e-18	35.18	Excinuclease ABC, C subunit, N-terminal	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR20208:SF13	EMB\|CAB76036.1	coord: 21..71
None	No IPR available	PANTHER	PTHR20208:SF13	EMB\|CAB76036.1	coord: 133..193
None	No IPR available	PANTHER	PTHR20208	STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1	coord: 21..71
None	No IPR available	PANTHER	PTHR20208	STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1	coord: 133..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC10G193430.1	CmUC10G193430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
cellular_component	GO:0033557	Slx1-Slx4 complex
molecular_function	GO:0017108	5'-flap endonuclease activity
molecular_function	GO:0008821	crossover junction endodeoxyribonuclease activity