CmUC10G190950 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC10G190950
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	polyadenylate-binding protein 2-like
Location	CmU531Chr10: 19500005 .. 19507869 (-)
RNA-Seq Expression	CmUC10G190950
Synteny	CmUC10G190950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGTTCAAATTTCAAAACTTCATAAATAAATAGAAAAATAAAACCTAAAAATTAAAAAGGGGAAAATGTGTAAAATATACGAGCCGGTTTGAACCCGAAGTTATTGTAACTCCCTTTGAGAGAAAGGGGAGAGAGAGAGAGAGAGGGAGGCAGAGGCAGAGAAAGGGGCGGTGGGACGGCGGAGGAGAAGCCATGGAGCACGATGACATCGACATGATTGGCTCCGACAACAACGACGCTGTGGTTCGTTTCCTTTTTCAATCTTTCAATTCCATTCCTTATTCATCATCCTCTTCTTTTTTCCTCCTCTGAAAACCCTAATTCCCTCTCTTTCCTCCTCCTTTCTCCCCCCTCCTAATCGTCTTTCAGGAGTTAGACGACATGAAGAAGCGGTTGAAAGAGATGGAAGATGAAGCTGCTGCTCTACGTGAGATGCAGGCCAAGGTCGAGAAAGAAATGAGTTCTGTCCAAGGTTCTTTTATTATGCTCTTCTTCGCTTTTCCAAATTACTTTTCTCTTTTCTTTCTACAATGTCCTTCAGATATGGAGAGTCTCTGGCGAATCTCTTCGTTTTGTTTCTAAGTCGAGGTTTGGGCTGGAGTTGCTATTTGTTTGATTCTGTAGGTCCTCTTTTGATCCAATGCAAGTTGAAAATGTTCAAGGAAATGTTTACATTTTGGAAGAAGGCGCATTTGGATCTCATGCAGAAAACTGGAGCTTGTATTTGAATTTCTTATTGTTGCACTTTATTAACTCTGAGTGACTGAATCTTGAACTATCCCCTACGTCTTTTGATCAAGAAGTGGTAGTTTCTAATTATGAGAAGTTTGCTAGTTGCTATTGTACTGCTTTTTCTTCTTTGATGAAAAGAATACCGACTTTGAAATTAAGATGAGAATTGAGAACCTTAGTTGTGTGTCAATTATGGAGACTTCATTTTTTCTTGATCATCCGGTATATGTTTTTATTCTAAATACATCTATCGTACAAAAGAAGTTCTATCAGTTTGTTACCGTTAAATATTTAACCACTTTTTGTACTACCAGATCCTGCAAGTGCTGCTGCAAGTCAAGCAAATAGAGAGGAGGTGGATTCACGGTCAGTGTTTGTTGGCAATGTACGATCTCTTTGACCTTGACCAATATTATTTTATTTTTACATGTTTATCCAGTCGCTTATTTTGGTCACACAATTTGATTATTGGGGTGAAAGGACTCTCTCTGTTCATGTTAAATTCTTGAACAATATCAGCTTTGTTGTAGTCAGAGGCCTAGCTTTACCTGAAGAAGGCTATATGTTTCCATTTAATGAAAAACTAACTGATTCTTATTTCTGTTCAACATATGGAAATGGAAGGAACCTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTGCACTTTGTTGGTATAGAGTGCTGAATTCCAGTTCTTGTTCTTTCTTCTGTAAAATAAATTCTTGTGCGGTTAATTTTCATTTTGTGATTAGAGTGCAGCCATCAATATGTCAATCTCTAATAGCTTGTGGAGGGAAACACATAGAGTGCCATTAATTTAAGCCTTTTCCCCATTTTCTTAGTTCCATTGTTTGAAATGACTTCAGCATTATGTCCTAACTGTTTGCACTACCTCCTAATTTTACTAGATTTCTTATTTCTATTGAAGTCGTTTATCATGAAGGGAACCATGACTGGATCTTCTTTAGCTTTTTTCTGTTATTAATCTTCAGCCTTTTCTTTTGCTCCATGAAATTGGCAGGAAGAATGGGGCAATCTTATTGATGTATTTAACAACCTTTCTATATCTTAATTGGATTGCAGTTATTAATAATTGGAGGTAAATGGGCACCACTTACTGAAGAGCTGTATTCTTCAGTAAACAATAGAATGAGCTTTTTGAGCACGATTTTCTTTGAGGATTCATTTATTAATTCTTGACATGGATTAGGATTGCACTGACTATCATTGCTCATGTGATCATAAAGGTTCATTGAATTTCAGTTAGCTATGATTTGTTCCTCTTGGTACATATCATTCATGTCCTGGGAAGAGGTTAGATCATGCTTTCCATATTGAGGATGTTGAAGTGGTTGGTTGCTAGGAGATGTTTGGAGGAATCATTTTATTATTATATATCGTTCTGTCTTTTAAGAACTTTAAAATCTATAAATAACTATTAGGAATATTTTCTGGATAGATTATTCAATTTATTCTATACAATGTGGATGGTTGCTTTTTAAATTTTATATGACCCATTTCTGCACTGTGCTTGAAATTTTAGTATATGTTGGTGTTTCTAGCCTGATTTGACTCCCGTGTTTGACTGCAATTACAGGTTAGGCTTACTTCATCACGTTTTCTGATTACCTATTGCTGAAGTCGGATATTCTCTGATATGTTATAAAGCTAGCTTTCTAGTATATAAAAAAAAGTGTCTTGTCCCAAAAGAAAGAACAGATAAAAAAAGAAGTGATAAAATCAAGAAGGGTAATAGTTTTGGTTGAATCTTTGAAAAGCGTGATGGAAGAAAATTGTTGAGATGAGTTAACAAGAAGAGAAAATATACCTAAATGTCTTGTAGTTCGTGCCCGGGTGGGCTCAGAGTTAGTCAATCTAACATGTCTCAAGTTTGAGGCCATGTCGGTAATGTGGAAAAGGAGTTATTAAAAAAAAAAAGAGGGAAACAGAGGACAAAACTCACCAGCATAGAAAAGGGTATGTGTGACTATGGATAAGGTCAGCAGAAGTTTTACTGGCTTGCTTGATTGAACTGGAATGATGGAGAGGGCTTGACAAGTTTTGAAGGGAAGTAATGTGCATTCGCAACTAAGGAGGACTAGCTGTGGCGCTGAGGTATGTTATTGTCTTATGTTGAAGCCAGCATTTGTGACCACTGTTCGAGGATTGTTTAAGTGATTTACAATCTATGGTGAGAGACCTCCAAATATCTCTGATCTTCCTGTCTCCTCCTCCCTTAATCCATCGAGGAAAGGATAAAACATGATTAGAGAAGGTTTTATGTTTCTATTTCTACTTGTGGGAAATATTCATGTTTTACCTTCATCCATAGCCCACTCAGTCAATTTTAACTTTGAGAGGCTGTTTGGCCCACCAACCTCTTACGTTGGTGTAAATAACTCAGCTTCAATAGTAAACACTATTGAACTTGCTCATTTATCGAGTAACTCCATCTTTTCTTCTCACATTTATCAAGGAACCCTGTCTTTCCCTCTGTCTCTACTTTTCATATTTACCAAGTAACTCCATCTTACTTTCTTAATCTACTTTTCACAATTATCGAGGAATTCAATCTTACACCTCAGCACCCCAAACACGAACTTACGAACTCCAACGTATTAACCCTAGATTTACTAACTTCGCTCAATGGGCCAAGCACTCTTGAAGTTTTAGATTCATCAAATTAAACTCCAGGTTCGTATAGGTTATAATATTAATACCCTCCTTGATAGAAGTTAGAGAATGTTAAATAACTAACTGAATTATTCAAAATCTAGCCAGCCAACCAACCAACCCAAAGTACTGCTAAGAAACAAAACCCAATGTCGCCCAATGGTTAGACACCCTGCTTAACAATTAGCAAGTAGAAATAGTCTTGTTCTCCAATCACAACCCCCAACACTTAATCTTAAATCTCAAAAAAAAAAAAAAAAACAAAAACAAAAACAAAAGCAAAAAAAAAAAAAACAAAAAAAAAAAAAGAAACTAAAAAATTAAAAACAAAATCAAAACAAAAATGACCAACAGAGGGTTTTAATTTGATCCACTATTCAGGTTCAGGTAGATGAATTTAAATTGGACTCGTTTAGCAAAGTACCCGGGTATGATTGTTTATCTGTTGTTTCGTAGGAGCAATCAAATGTCATTCCTTTCCATGGCATGGGTGGCAAAAACTATTAGTCGTCTAGGTTTTTACAAGAGAACAAATGTGGAGAAATTAGAGTTGCATAGTGGTTTCTTTTCTTCTCATGAATGGGTGTCCACATTTGGAATTAGAAGGGCACCTATTATTGTGAACGATTGGGACATGACCTTTTCCTCAATTAATTAAATTTTTTTCCAGTTTGTTACAGGGTGATGTACTATACGGATATGTGTTCCTCATATTTATTGATTAAAAATATTTGTGAGATTTACATTCTACTGATATTGATATAATATAATAAGTTAACTGATAGAAAATGGACAATGGAAGCCCTATTTTATTGGTTTTTTGTGGTAAGAAATGTTTTGAGCTACATTTGGAACAGGTTGACTACTCATGTACCCCAGAAGAAGTACAGCAACATTTCCAATCATGTGGAACTGTAAACAGAATCACTATTCGCACTGATAAGTTCGGGCAACCAAAGGGTTATGCATATGTTGAATTCGTTGAGCCAGAAGCTGTTCAAGAGGCTCTCCTTCTGAATGAATCAGAATTGCATGGTCGACAGCTAAAGGTTAACATATCTTTGTATATTACTTGATTAGTGTGTGTTTAAGATTCTTCTACTGAATTATACGCACTTTTTTCGAAAAATTGAATTTTTAAGTATGTTGCAGGTAACTGCCAAGAGGACAAACATACCTGGGATGAAGCAATATCGTCCACGCCGATCCAATCCATTTATGGGTGCTCGATCCAGGAGCCCATATGTTGCTCCTTATTTCTTCTCACCATATGGATACGGGTATGATTGGTGAATAAAAATTTCCAATGCAAACCGCTTGAATCTCTTGCTCTCTTCCTAGTCATTTAGCATAGTTCTATCTGTTGCAGGAAAGTCCCGAGGTTCAGAATGCCAACGCGTTACGGCCCCTACTATTGAATGTTAATTTTGTTTTTGGGCATTGTTGAATTAGAGACATTGCACTTAAATGTGTCTGCATGCCCTTTTCTTTCTTACGGAAATTGATGTTTGGATATAATTTTAAGAGATCTTTTCTGTTTAAAAAGAAATGGAGTGTGAGCAAGCACGACGCAGGTTCGATCACTTTGAGCTGTACCATTCGCAGCATCACTGCGTAAGAAAAGCTTCTCTGGACTTTGCTGCTGGTAAGTTTTCAAGATCTAAGTATTCATTTTGGAATTGTGCATGTTGTTCGAAGCTAACATTGGAAAATCCAATACATACTTGGTATCAAACCGTTTATATATTTAGTGCTTGCTATTTCCAACTTTTAATTTATAGATTGTCTCGATTCATAGATTTTATACTTTAATTTATCTTTCCGTATCATTCTAGGTTCTATAATCTGTTTTCCTTCCCTCTTTTGTAATGCATAATATTTATTTATTTGTAATATTGAAAAAAATAACACTGGATTGTCACTAAAGGCTGGGGCAAAAAGAAAAGCTCTTGGCTTTGGCGATTTCATTTCATTTGTGGAAAGTGCATAGGATGATCATAGTTCTTAAACTTTCTTAGTGTTAGTTTGATCTTCACATTTTCACTCTATATGCTGGTGTTCCAAAATTTTGAATATCTATGCTTTTTGTTTCTGTATTTTACCTTTGGTAGCATTTTGTTCTTTTTGTGACAAAATTAATTTCTGTACGTTCAACCAAAGACTTTGGAATTCAGGTTGAACGTGCAGAATATATATATAAACGTTATTATTGATATTTTGAGTATGAGATTACATTGTCTTAAGAAAACTTAATGAAATAGCCTCAAATAAAGTGGATAACTTATGATTAAGCTCAGTTTTAAAGGTGGTTTTCGTTCTAGTTCTGATAAAATAGTTATGGATTCAGAAAATGGTAAATTATTGTAATAATTTGGTTTTTAGCTTTTGAAAATTAATCTGATCATCACGATTTCAACTTTTTATTGCTAATAATCACTATTTCAATTTAAATAATTTTCTTGTAATATACTTTTTAGAAATATCTTTCAAAATCTAAACCGAAACTAAAAAGAATGAAGTTTTTGTTTTTGTTTTTGTTTCTGAAATTAGCTAGGTACTCTAACGATTCCTCAAGAAACAAAACTTTTGTAAAGTTGTAATATACATACATGATTTTCGAAATCAAAAACCGAATGTTTATTAATTTGAACCTGAAGTTTATAATCTTATAGTTTCTCATTTTGATCACACATCATGTGATGAAGTATTCAGTTATCATTTGAAGGATGCCCTCTCTCTTTTAAAGTCATTAAGATTCACCTTATCCATTCACCATTGACTAAATAATTCTCCACTCCCAATGTTTGCAAATGGTAAGAAACTTGAGTATATTACTAAACTCAGTATGCTTATTTGATTTCCCTGAAAAGCTGACGGATAAAAAAGAAAGCTTAAAATCATTGGCCACATGTTTGTTTTTGCACCCATCTTTTAAATGCTTCGTGCCCACCAAATTAAAAAAATAATGATTCCACAAGATCTTTATCACATTTAATCATCACCTCAAAATCTGATATATTCCCCATTTTTTTTATCTCTTTCAAATATCAAATTCTTTCCCCACTTTTCCCATCATTACCTTACTTTATTCCCATTACCAAACACTCCTAAATTCTCCACTTTGGATAAAACGGCATAAAGAAAAATACAACCTAATTATTGCAGCTTCTTTCCCTTGCTTTTAAATCCTTTTTTTTTTTTTTTCTTTTCTTTAAATAAAGTTTACATTATTTATGATCCTCCTCCTCCATAGTCCATTTTCTTTTTTTTTTTCCCTTCATTTTTCAAATACGAATATACACATCACCACCCAAACGACACCGTTTCATCCATCTCCCCCAACCATACGTCGACCAAACCCATTTTCGTGGATCACATTTCTACTCATCATATTATATATCTACAAGGGAAAAAGAGGAACACAGAAAAAGCCTTCACTTCCACGTGTTGCCCTCGTCAGCCACGTCACACCAACGTCTTACACGTAGACGTCTGAGGGTCCCACATCGCCGGAAGAAGAAACTTCCGTCCATTAACGCCATGGGCATTGAAACTGGCTCCGGTGACCTTGTCAACCAAAACTTGACCCGGGTAACCTGGATATGCTCCGGACCCGAATAACCCGGTGCAGGCCGAAACCGCTTCCAGCGGCGCCGTCGGCGGGCCTTGAAAGTACCCGTCGTTGAAAGGATTCGTTACAGTTCCTGCAAGAACGGTGGCCAAATTGATGATCATTCCGTCAATACCAACGTCGCCGTTAGGAGCGATTAGCGGGGGCGTCTGAGGGCCGTAAATAGGCTGATAAAACGGCCAAGCACAGTACCCAGGGCACTGAGTTTCAGAGTTTCCGACCCACACATATGCCGTTCTTGCCCTGCTCCGACCTACCGGAACTGACCCATGAGTCCCGCACCGGCTCCGGCAGAATCCATCAACGGTAACATCCTTCGCCGTCAGCACCAAGTTAACAGAATTTAACTGATTGACTTTCCTCGCCAAAGCCCTAAGATGCAGGTCCTTCAGATTTTTCCCCAAAGTGTAAGACTCGTGAAGAAACTGCTTCCCGACGACGAGATTCGACGACCCGCCTTTGTATTTCTCCGTTGTCTTCCACCAGAGAGACGCCGACGGTGCCGGAGCTTGAGAATAGCTTAAAGATTGAATGAAATCCACGATTACAGAGCGCTGTGAGGATGTGAATTGGCCGTACCAAATCAAATTGACGGTGATATTCCCTTTCAGAAGAGAACCCTTGTGGTACTCAAGTACTAACGGCTGTTGCTCGACGAGCGCCGCCAGTTTCCGGCTGAGACCAGGCTCGGCGGAGGAAAGGAAGAAGAACAGAGTGAAACAGAGAGTAGCGAGATTGTAAATAGAAGCCATGAGTAAGGGCAAAGCTGGAAAAGGATGATAGATTTGGATTTTTGAATTTT

mRNA sequence

AGGTTCAAATTTCAAAACTTCATAAATAAATAGAAAAATAAAACCTAAAAATTAAAAAGGGGAAAATGTGTAAAATATACGAGCCGGTTTGAACCCGAAGTTATTGTAACTCCCTTTGAGAGAAAGGGGAGAGAGAGAGAGAGAGGGAGGCAGAGGCAGAGAAAGGGGCGGTGGGACGGCGGAGGAGAAGCCATGGAGCACGATGACATCGACATGATTGGCTCCGACAACAACGACGCTGTGGAGTTAGACGACATGAAGAAGCGGTTGAAAGAGATGGAAGATGAAGCTGCTGCTCTACGTGAGATGCAGGCCAAGGTCGAGAAAGAAATGAGTTCTGTCCAAGGTCCTCTTTTGATCCAATGCAAGTTGAAAATGTTCAAGGAAATGTTTACATTTTGGAAGAAGGCGCATTTGGATCTCATGCAGAAAACTGGAGCTTATCCTGCAAGTGCTGCTGCAAGTCAAGCAAATAGAGAGGAGGTGGATTCACGGTCAGTGTTTGTTGGCAATGTTGACTACTCATGTACCCCAGAAGAAGTACAGCAACATTTCCAATCATGTGGAACTGTAAACAGAATCACTATTCGCACTGATAAGTTCGGGCAACCAAAGGGTTATGCATATGTTGAATTCGTTGAGCCAGAAGCTGTTCAAGAGGCTCTCCTTCTGAATGAATCAGAATTGCATGGTCGACAGCTAAAGGTAACTGCCAAGAGGACAAACATACCTGGGATGAAGCAATATCGTCCACGCCGATCCAATCCATTTATGGGTGCTCGATCCAGGAGCCCATATGTTGCTCCTTATTTCTTCTCACCATATGGATACGGGAAAGTCCCGAGGTTCAGAATGCCAACGCGTTACGGCCCCTACTATTGAATGTTAATTTTGTTTTTGGGCATTGTTGAATTAGAGACATTGCACTTAAATGTGTCTGCATGCCCTTTTCTTTCTTACGGAAATTGATGTTTGGATATAATTTTAAGAGATCTTTTCTGTTTAAAAAGAAATGGAGTGTGAGCAAGCACGACGCAGGTTCGATCACTTTGAGCTGTACCATTCGCAGCATCACTGCGTAAGAAAAGCTTCTCTGGACTTTGCTGCTGGTAAGTTTTCAAGATCTAAGTATTCATTTTGGAATTGTGCATGTTGTTCGAAGCTAACATTGGAAAATCCAATACATACTTGGTATCAAACCGTTTATATATTTAGTGCTTGCTATTTCCAACTTTTAATTTATAGATTGTCTCGATTCATAGATTTTATACTTTAATTTATCTTTCCGTATCATTCTAGGTTCTATAATCTGTTTTCCTTCCCTCTTTTGTAATGCATAATATTTATTTATTTGTAATATTGAAAAAAATAACACTGGATTGTCACTAAAGGCTGGGGCAAAAAGAAAAGCTCTTGGCTTTGGCGATTTCATTTCATTTGTGGAAAGTGCATAGGATGATCATAGTTCTTAAACTTTCTTAGTGTTAGTTTGATCTTCACATTTTCACTCTATATGCTGGTGTTCCAAAATTTTGAATATCTATGCTTTTTGTTTCTGTATTTTACCTTTGGTAGCATTTTGTTCTTTTTGTGACAAAATTAATTTCTGTACGTTCAACCAAAGACTTTGGAATTCAGGTTGAACGTGCAGAATATATATATAAACGTTATTATTGATATTTTGAGTATGAGATTACATTGTCTTAAGAAAACTTAATGAAATAGCCTCAAATAAAGTGGATAACTTATGATTAAGCTCAGTTTTAAAGGTGGTTTTCGTTCTAGTTCTGATAAAATAGTTATGGATTCAGAAAATGGTAAATTATTGTAATAATTTGGTTTTTAGCTTTTGAAAATTAATCTGATCATCACGATTTCAACTTTTTATTGCTAATAATCACTATTTCAATTTAAATAATTTTCTTGTAATATACTTTTTAGAAATATCTTTCAAAATCTAAACCGAAACTAAAAAGAATGAAGTTTTTGTTTTTGTTTTTGTTTCTGAAATTAGCTAGGTACTCTAACGATTCCTCAAGAAACAAAACTTTTGTAAAGTTGTAATATACATACATGATTTTCGAAATCAAAAACCGAATGTTTATTAATTTGAACCTGAAGTTTATAATCTTATAGTTTCTCATTTTGATCACACATCATGTGATGAAGTATTCAGTTATCATTTGAAGGATGCCCTCTCTCTTTTAAAGTCATTAAGATTCACCTTATCCATTCACCATTGACTAAATAATTCTCCACTCCCAATGTTTGCAAATGGTAAGAAACTTGAGTATATTACTAAACTCAGTATGCTTATTTGATTTCCCTGAAAAGCTGACGGATAAAAAAGAAAGCTTAAAATCATTGGCCACATGTTTGTTTTTGCACCCATCTTTTAAATGCTTCGTGCCCACCAAATTAAAAAAATAATGATTCCACAAGATCTTTATCACATTTAATCATCACCTCAAAATCTGATATATTCCCCATTTTTTTTATCTCTTTCAAATATCAAATTCTTTCCCCACTTTTCCCATCATTACCTTACTTTATTCCCATTACCAAACACTCCTAAATTCTCCACTTTGGATAAAACGGCATAAAGAAAAATACAACCTAATTATTGCAGCTTCTTTCCCTTGCTTTTAAATCCTTTTTTTTTTTTTTTCTTTTCTTTAAATAAAGTTTACATTATTTATGATCCTCCTCCTCCATAGTCCATTTTCTTTTTTTTTTTCCCTTCATTTTTCAAATACGAATATACACATCACCACCCAAACGACACCGTTTCATCCATCTCCCCCAACCATACGTCGACCAAACCCATTTTCGTGGATCACATTTCTACTCATCATATTATATATCTACAAGGGAAAAAGAGGAACACAGAAAAAGCCTTCACTTCCACGTGTTGCCCTCGTCAGCCACGTCACACCAACGTCTTACACGTAGACGTCTGAGGGTCCCACATCGCCGGAAGAAGAAACTTCCGTCCATTAACGCCATGGGCATTGAAACTGGCTCCGGTGACCTTGTCAACCAAAACTTGACCCGGGTAACCTGGATATGCTCCGGACCCGAATAACCCGGTGCAGGCCGAAACCGCTTCCAGCGGCGCCGTCGGCGGGCCTTGAAAGTACCCGTCGTTGAAAGGATTCGTTACAGTTCCTGCAAGAACGGTGGCCAAATTGATGATCATTCCGTCAATACCAACGTCGCCGTTAGGAGCGATTAGCGGGGGCGTCTGAGGGCCGTAAATAGGCTGATAAAACGGCCAAGCACAGTACCCAGGGCACTGAGTTTCAGAGTTTCCGACCCACACATATGCCGTTCTTGCCCTGCTCCGACCTACCGGAACTGACCCATGAGTCCCGCACCGGCTCCGGCAGAATCCATCAACGGTAACATCCTTCGCCGTCAGCACCAAGTTAACAGAATTTAACTGATTGACTTTCCTCGCCAAAGCCCTAAGATGCAGGTCCTTCAGATTTTTCCCCAAAGTGTAAGACTCGTGAAGAAACTGCTTCCCGACGACGAGATTCGACGACCCGCCTTTGTATTTCTCCGTTGTCTTCCACCAGAGAGACGCCGACGGTGCCGGAGCTTGAGAATAGCTTAAAGATTGAATGAAATCCACGATTACAGAGCGCTGTGAGGATGTGAATTGGCCGTACCAAATCAAATTGACGGTGATATTCCCTTTCAGAAGAGAACCCTTGTGGTACTCAAGTACTAACGGCTGTTGCTCGACGAGCGCCGCCAGTTTCCGGCTGAGACCAGGCTCGGCGGAGGAAAGGAAGAAGAACAGAGTGAAACAGAGAGTAGCGAGATTGTAAATAGAAGCCATGAGTAAGGGCAAAGCTGGAAAAGGATGATAGATTTGGATTTTTGAATTTT

Coding sequence (CDS)

ATGGAGCACGATGACATCGACATGATTGGCTCCGACAACAACGACGCTGTGGAGTTAGACGACATGAAGAAGCGGTTGAAAGAGATGGAAGATGAAGCTGCTGCTCTACGTGAGATGCAGGCCAAGGTCGAGAAAGAAATGAGTTCTGTCCAAGGTCCTCTTTTGATCCAATGCAAGTTGAAAATGTTCAAGGAAATGTTTACATTTTGGAAGAAGGCGCATTTGGATCTCATGCAGAAAACTGGAGCTTATCCTGCAAGTGCTGCTGCAAGTCAAGCAAATAGAGAGGAGGTGGATTCACGGTCAGTGTTTGTTGGCAATGTTGACTACTCATGTACCCCAGAAGAAGTACAGCAACATTTCCAATCATGTGGAACTGTAAACAGAATCACTATTCGCACTGATAAGTTCGGGCAACCAAAGGGTTATGCATATGTTGAATTCGTTGAGCCAGAAGCTGTTCAAGAGGCTCTCCTTCTGAATGAATCAGAATTGCATGGTCGACAGCTAAAGGTAACTGCCAAGAGGACAAACATACCTGGGATGAAGCAATATCGTCCACGCCGATCCAATCCATTTATGGGTGCTCGATCCAGGAGCCCATATGTTGCTCCTTATTTCTTCTCACCATATGGATACGGGAAAGTCCCGAGGTTCAGAATGCCAACGCGTTACGGCCCCTACTATTGA

Protein sequence

MEHDDIDMIGSDNNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQGPLLIQCKLKMFKEMFTFWKKAHLDLMQKTGAYPASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPYY

Homology

[Close]

BLAST of CmUC10G190950 vs. NCBI nr
Match: XP_008462875.1 (PREDICTED: polyadenylate-binding protein 2-like isoform X2 [Cucumis melo] >KAA0061167.1 polyadenylate-binding protein 2-like isoform X2 [Cucumis melo var. makuwa] >TYK29930.1 polyadenylate-binding protein 2-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 368.2 bits (944), Expect = 5.0e-98
Identity = 194/229 (84.72%), Postives = 195/229 (85.15%), Query Frame = 0


Query: 1   MEHDDIDMIGSDNNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQGPLLIQCKL 60
           MEHDDIDMIGSD NDAVELDDMKKRLK+MEDEAAALREMQAKVEKEMSSVQ         
Sbjct: 1   MEHDDIDMIGSDTNDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQD-------- 60

Query: 61  KMFKEMFTFWKKAHLDLMQKTGAYPASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQH 120
                                   PASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQH
Sbjct: 61  ------------------------PASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQH 120

Query: 121 FQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIP 180
           FQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIP
Sbjct: 121 FQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIP 180

Query: 181 GMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPYY 230
           GMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPYY
Sbjct: 181 GMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPYY 197

[Close]

BLAST of CmUC10G190950 vs. NCBI nr
Match: XP_038877304.1 (polyadenylate-binding protein 2-like [Benincasa hispida])

HSP 1 Score: 367.9 bits (943), Expect = 6.6e-98
Identity = 193/229 (84.28%), Postives = 195/229 (85.15%), Query Frame = 0


Query: 1   MEHDDIDMIGSDNNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQGPLLIQCKL 60
           MEHDD+DMIGSD NDAVELDDMKKRLK+MEDEAAALREMQAKVEKEMSSVQ         
Sbjct: 1   MEHDDVDMIGSDTNDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQD-------- 60

Query: 61  KMFKEMFTFWKKAHLDLMQKTGAYPASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQH 120
                                   PASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQH
Sbjct: 61  ------------------------PASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQH 120

Query: 121 FQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIP 180
           FQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIP
Sbjct: 121 FQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIP 180

Query: 181 GMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPYY 230
           GMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPYY
Sbjct: 181 GMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPYY 197

[Close]

BLAST of CmUC10G190950 vs. NCBI nr
Match: XP_011653388.1 (polyadenylate-binding protein 2 isoform X3 [Cucumis sativus] >KGN53719.1 hypothetical protein Csa_015373 [Cucumis sativus])

HSP 1 Score: 367.1 bits (941), Expect = 1.1e-97
Identity = 193/229 (84.28%), Postives = 195/229 (85.15%), Query Frame = 0


Query: 1   MEHDDIDMIGSDNNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQGPLLIQCKL 60
           MEHDD+DMIGSD NDAVELDDMKKRLK+MEDEAAALREMQAKVEKEMSSVQ         
Sbjct: 1   MEHDDVDMIGSDANDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQD-------- 60

Query: 61  KMFKEMFTFWKKAHLDLMQKTGAYPASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQH 120
                                   PASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQH
Sbjct: 61  ------------------------PASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQH 120

Query: 121 FQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIP 180
           FQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIP
Sbjct: 121 FQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIP 180

Query: 181 GMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPYY 230
           GMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPYY
Sbjct: 181 GMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPYY 197

[Close]

BLAST of CmUC10G190950 vs. NCBI nr
Match: XP_022140995.1 (polyadenylate-binding protein 2-like isoform X1 [Momordica charantia])

HSP 1 Score: 364.4 bits (934), Expect = 7.3e-97
Identity = 191/229 (83.41%), Postives = 196/229 (85.59%), Query Frame = 0


Query: 1   MEHDDIDMIGSDNNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQGPLLIQCKL 60
           MEH+DIDMIGS++NDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQ         
Sbjct: 1   MEHEDIDMIGSESNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQD-------- 60

Query: 61  KMFKEMFTFWKKAHLDLMQKTGAYPASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQH 120
                                   PASAAASQANREEVD+RSVFVGNVDYSCTPEEVQQH
Sbjct: 61  ------------------------PASAAASQANREEVDARSVFVGNVDYSCTPEEVQQH 120

Query: 121 FQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIP 180
           FQSCGTVNRITIRTDKFGQPKGYAYVEF+EPEAVQEALLLNESELHGRQLKVTAKRTNIP
Sbjct: 121 FQSCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLKVTAKRTNIP 180

Query: 181 GMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPYY 230
           GMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPYY
Sbjct: 181 GMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPYY 197

[Close]

BLAST of CmUC10G190950 vs. NCBI nr
Match: XP_008462873.1 (PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Cucumis melo])

HSP 1 Score: 362.1 bits (928), Expect = 3.6e-96
Identity = 194/234 (82.91%), Postives = 195/234 (83.33%), Query Frame = 0


Query: 1   MEHDDIDMIGSDNNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQGPLLIQCKL 60
           MEHDDIDMIGSD NDAVELDDMKKRLK+MEDEAAALREMQAKVEKEMSSVQ         
Sbjct: 1   MEHDDIDMIGSDTNDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQD-------- 60

Query: 61  KMFKEMFTFWKKAHLDLMQKTGAYPASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQH 120
                                   PASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQH
Sbjct: 61  ------------------------PASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQH 120

Query: 121 FQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIP 180
           FQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIP
Sbjct: 121 FQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIP 180

Query: 181 GMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYG-----KVPRFRMPTRYGPYY 230
           GMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYG     KVPRFRMPTRYGPYY
Sbjct: 181 GMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGSICCRKVPRFRMPTRYGPYY 202

[Close]

BLAST of CmUC10G190950 vs. ExPASy Swiss-Prot
Match: Q9FJN9 (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 7.6e-73
Identity = 144/224 (64.29%), Postives = 166/224 (74.11%), Query Frame = 0


Query: 5   DIDMIGSDNNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQGPLLIQCKLKMFK 64
           D+DM  +D++   ELD+MKKRLKEMEDEAAALREMQAKVEKEM +               
Sbjct: 29  DLDMAAADDDAVKELDEMKKRLKEMEDEAAALREMQAKVEKEMGAQD------------- 88

Query: 65  EMFTFWKKAHLDLMQKTGAYPASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQHFQSC 124
                               PAS AA+QA +EEVD+RSVFVGNVDY+CTPEEVQQHFQ+C
Sbjct: 89  --------------------PASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTC 148

Query: 125 GTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQ 184
           GTV+R+TI TDKFGQPKG+AYVEFVE EAVQEAL LNESELHGRQLKV  KRTN+PG+KQ
Sbjct: 149 GTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQ 208

Query: 185 YRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPY 229
           +R RR NP+MG R R P+++PY +SPYGYGK PRFR P RY PY
Sbjct: 209 FRGRRFNPYMGYRFRRPFMSPYMYSPYGYGKAPRFRRPMRYMPY 219

[Close]

BLAST of CmUC10G190950 vs. ExPASy Swiss-Prot
Match: Q9LX90 (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 3.2e-71
Identity = 143/224 (63.84%), Postives = 161/224 (71.88%), Query Frame = 0


Query: 5   DIDMIGSDNNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQGPLLIQCKLKMFK 64
           DIDM  +D +   EL +MK+RLKEME+EAAALREMQAKVEKEM + Q             
Sbjct: 25  DIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQAKVEKEMGATQD------------ 84

Query: 65  EMFTFWKKAHLDLMQKTGAYPASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQHFQSC 124
                               PAS AA+Q  +EEVD+RSV+VGNVDY+CTPEEVQ HFQ+C
Sbjct: 85  --------------------PASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTC 144

Query: 125 GTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQ 184
           GTVNR+TI  DKFGQPKG+AYVEFVE EAVQEAL LNESELHGRQLKV+ KRTN+PGMKQ
Sbjct: 145 GTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQ 204

Query: 185 YRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPY 229
           Y P R NP MG R R P+V PYF+SPYGYGK PRFR P RY PY
Sbjct: 205 YHPGRFNPSMGYRFRRPFVPPYFYSPYGYGKAPRFRRPMRYMPY 216

[Close]

BLAST of CmUC10G190950 vs. ExPASy Swiss-Prot
Match: Q93VI4 (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.6e-59
Identity = 127/219 (57.99%), Postives = 149/219 (68.04%), Query Frame = 0


Query: 10  GSDNNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQGPLLIQCKLKMFKEMFTF 69
           GS + D   L+DMKKR+KE+E+EA ALREMQAK EK+M + Q P                
Sbjct: 48  GSSSRD---LEDMKKRIKEIEEEAGALREMQAKAEKDMGASQDP---------------- 107

Query: 70  WKKAHLDLMQKTGAYPASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNR 129
                            S   S A +EEVDSRS++VGNVDY+CTPEEVQQHFQSCGTVNR
Sbjct: 108 -----------------SGGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNR 167

Query: 130 ITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRR 189
           +TI TDKFGQPKG+AYVEFVE EAVQ +L+LNESELHGRQ+KV+AKRTN+PGM+Q+R  R
Sbjct: 168 VTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPGMRQFR-GR 227

Query: 190 SNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPY 229
             PF   R   P V   F+ PY YG+VPRFR P RY PY
Sbjct: 228 GRPFRPMRGFMPGVP--FYPPYAYGRVPRFRRPMRYRPY 227

[Close]

BLAST of CmUC10G190950 vs. ExPASy Swiss-Prot
Match: O14327 (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pab2 PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 9.4e-31
Identity = 85/195 (43.59%), Postives = 108/195 (55.38%), Query Frame = 0


Query: 18  ELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQGPLLIQCKLKMFKEMFTFWKKAHLDL 77
           EL +MK+R+ EME EAA LR MQ +++ E  +++                          
Sbjct: 13  ELLEMKERVAEMEAEAAKLRAMQEQLDNETEALRN------------------------- 72

Query: 78  MQKTGAYPASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKF 137
                           ++E +D++SV+VGNVDYS TPEE+Q HF SCG+VNR+TI  DKF
Sbjct: 73  ----------------DKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKF 132

Query: 138 -GQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPR-----RSN 197
            G PKG+AY+EF EP  V  ALLLN S LH R LKVT KRTN+PGM + R R     R  
Sbjct: 133 TGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKVTPKRTNVPGMSRGRGRGRGRGRGR 166

Query: 198 PFMGARSRSPYVAPY 207
              G R R+   APY
Sbjct: 193 GRGGYRGRARGFAPY 166

[Close]

BLAST of CmUC10G190950 vs. ExPASy Swiss-Prot
Match: Q9DDY9 (Polyadenylate-binding protein 2-A OS=Xenopus laevis OX=8355 GN=pabpn1-a PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.8e-27
Identity = 87/242 (35.95%), Postives = 126/242 (52.07%), Query Frame = 0


Query: 2   EHDDIDMIGSDNNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMS-----SVQGPLLI 61
           E +  ++ G    +  EL+ +K R++EME+EA  L+E+Q +VEK+M+        GP+++
Sbjct: 93  EEEPGELTGDQTIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIM 152

Query: 62  QCKLKMFKEMFTFWKKAHLDLMQKTGAYPASAAASQANREEVDSRSVFVGNVDYSCTPEE 121
             + KM                                  E D+RS++VGNVDY  T EE
Sbjct: 153 SVEEKM----------------------------------EADARSIYVGNVDYGATAEE 212

Query: 122 VQQHFQSCGTVNRITIRTDKF-GQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAK 181
           ++ HF  CG+VNR+TI  DKF G PKG+AY+EF + E+V+ +L L+ES   GRQ+KV  K
Sbjct: 213 LEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLFRGRQIKVVPK 272

Query: 182 RTNIPGMK---------QYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYG 229
           RTN PG+          +YR R S+      SRS + + Y   P G     R R  + Y 
Sbjct: 273 RTNRPGISTTDRGFPRARYRARASS----YSSRSRFYSGYTPRPRGRVYRGRARATSWYT 296

[Close]

BLAST of CmUC10G190950 vs. ExPASy TrEMBL
Match: A0A5A7V2R3 (Polyadenylate-binding protein 2-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold652G00160 PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 2.4e-98
Identity = 194/229 (84.72%), Postives = 195/229 (85.15%), Query Frame = 0


Query: 1   MEHDDIDMIGSDNNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQGPLLIQCKL 60
           MEHDDIDMIGSD NDAVELDDMKKRLK+MEDEAAALREMQAKVEKEMSSVQ         
Sbjct: 1   MEHDDIDMIGSDTNDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQD-------- 60

Query: 61  KMFKEMFTFWKKAHLDLMQKTGAYPASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQH 120
                                   PASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQH
Sbjct: 61  ------------------------PASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQH 120

Query: 121 FQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIP 180
           FQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIP
Sbjct: 121 FQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIP 180

Query: 181 GMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPYY 230
           GMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPYY
Sbjct: 181 GMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPYY 197

[Close]

BLAST of CmUC10G190950 vs. ExPASy TrEMBL
Match: A0A1S3CHX7 (polyadenylate-binding protein 2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501153 PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 2.4e-98
Identity = 194/229 (84.72%), Postives = 195/229 (85.15%), Query Frame = 0


Query: 1   MEHDDIDMIGSDNNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQGPLLIQCKL 60
           MEHDDIDMIGSD NDAVELDDMKKRLK+MEDEAAALREMQAKVEKEMSSVQ         
Sbjct: 1   MEHDDIDMIGSDTNDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQD-------- 60

Query: 61  KMFKEMFTFWKKAHLDLMQKTGAYPASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQH 120
                                   PASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQH
Sbjct: 61  ------------------------PASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQH 120

Query: 121 FQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIP 180
           FQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIP
Sbjct: 121 FQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIP 180

Query: 181 GMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPYY 230
           GMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPYY
Sbjct: 181 GMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPYY 197

[Close]

BLAST of CmUC10G190950 vs. ExPASy TrEMBL
Match: A0A0A0KXZ1 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G110060 PE=4 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 5.4e-98
Identity = 193/229 (84.28%), Postives = 195/229 (85.15%), Query Frame = 0


Query: 1   MEHDDIDMIGSDNNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQGPLLIQCKL 60
           MEHDD+DMIGSD NDAVELDDMKKRLK+MEDEAAALREMQAKVEKEMSSVQ         
Sbjct: 1   MEHDDVDMIGSDANDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQD-------- 60

Query: 61  KMFKEMFTFWKKAHLDLMQKTGAYPASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQH 120
                                   PASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQH
Sbjct: 61  ------------------------PASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQH 120

Query: 121 FQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIP 180
           FQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIP
Sbjct: 121 FQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIP 180

Query: 181 GMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPYY 230
           GMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPYY
Sbjct: 181 GMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPYY 197

[Close]

BLAST of CmUC10G190950 vs. ExPASy TrEMBL
Match: A0A6J1CGQ3 (polyadenylate-binding protein 2-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011513 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 3.5e-97
Identity = 191/229 (83.41%), Postives = 196/229 (85.59%), Query Frame = 0


Query: 1   MEHDDIDMIGSDNNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQGPLLIQCKL 60
           MEH+DIDMIGS++NDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQ         
Sbjct: 1   MEHEDIDMIGSESNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQD-------- 60

Query: 61  KMFKEMFTFWKKAHLDLMQKTGAYPASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQH 120
                                   PASAAASQANREEVD+RSVFVGNVDYSCTPEEVQQH
Sbjct: 61  ------------------------PASAAASQANREEVDARSVFVGNVDYSCTPEEVQQH 120

Query: 121 FQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIP 180
           FQSCGTVNRITIRTDKFGQPKGYAYVEF+EPEAVQEALLLNESELHGRQLKVTAKRTNIP
Sbjct: 121 FQSCGTVNRITIRTDKFGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLKVTAKRTNIP 180

Query: 181 GMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPYY 230
           GMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPYY
Sbjct: 181 GMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPYY 197

[Close]

BLAST of CmUC10G190950 vs. ExPASy TrEMBL
Match: A0A1S3CIE7 (polyadenylate-binding protein 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501153 PE=4 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 1.7e-96
Identity = 194/234 (82.91%), Postives = 195/234 (83.33%), Query Frame = 0


Query: 1   MEHDDIDMIGSDNNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQGPLLIQCKL 60
           MEHDDIDMIGSD NDAVELDDMKKRLK+MEDEAAALREMQAKVEKEMSSVQ         
Sbjct: 1   MEHDDIDMIGSDTNDAVELDDMKKRLKDMEDEAAALREMQAKVEKEMSSVQD-------- 60

Query: 61  KMFKEMFTFWKKAHLDLMQKTGAYPASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQH 120
                                   PASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQH
Sbjct: 61  ------------------------PASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQH 120

Query: 121 FQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIP 180
           FQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIP
Sbjct: 121 FQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIP 180

Query: 181 GMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYG-----KVPRFRMPTRYGPYY 230
           GMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYG     KVPRFRMPTRYGPYY
Sbjct: 181 GMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGSICCRKVPRFRMPTRYGPYY 202

[Close]

BLAST of CmUC10G190950 vs. TAIR 10
Match: AT5G65260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 275.0 bits (702), Expect = 5.4e-74
Identity = 144/224 (64.29%), Postives = 166/224 (74.11%), Query Frame = 0


Query: 5   DIDMIGSDNNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQGPLLIQCKLKMFK 64
           D+DM  +D++   ELD+MKKRLKEMEDEAAALREMQAKVEKEM +               
Sbjct: 29  DLDMAAADDDAVKELDEMKKRLKEMEDEAAALREMQAKVEKEMGAQD------------- 88

Query: 65  EMFTFWKKAHLDLMQKTGAYPASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQHFQSC 124
                               PAS AA+QA +EEVD+RSVFVGNVDY+CTPEEVQQHFQ+C
Sbjct: 89  --------------------PASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTC 148

Query: 125 GTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQ 184
           GTV+R+TI TDKFGQPKG+AYVEFVE EAVQEAL LNESELHGRQLKV  KRTN+PG+KQ
Sbjct: 149 GTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQ 208

Query: 185 YRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPY 229
           +R RR NP+MG R R P+++PY +SPYGYGK PRFR P RY PY
Sbjct: 209 FRGRRFNPYMGYRFRRPFMSPYMYSPYGYGKAPRFRRPMRYMPY 219

[Close]

BLAST of CmUC10G190950 vs. TAIR 10
Match: AT5G10350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 269.6 bits (688), Expect = 2.3e-72
Identity = 143/224 (63.84%), Postives = 161/224 (71.88%), Query Frame = 0


Query: 5   DIDMIGSDNNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQGPLLIQCKLKMFK 64
           DIDM  +D +   EL +MK+RLKEME+EAAALREMQAKVEKEM + Q             
Sbjct: 25  DIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQAKVEKEMGATQD------------ 84

Query: 65  EMFTFWKKAHLDLMQKTGAYPASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQHFQSC 124
                               PAS AA+Q  +EEVD+RSV+VGNVDY+CTPEEVQ HFQ+C
Sbjct: 85  --------------------PASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTC 144

Query: 125 GTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQ 184
           GTVNR+TI  DKFGQPKG+AYVEFVE EAVQEAL LNESELHGRQLKV+ KRTN+PGMKQ
Sbjct: 145 GTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQ 204

Query: 185 YRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPY 229
           Y P R NP MG R R P+V PYF+SPYGYGK PRFR P RY PY
Sbjct: 205 YHPGRFNPSMGYRFRRPFVPPYFYSPYGYGKAPRFRRPMRYMPY 216

[Close]

BLAST of CmUC10G190950 vs. TAIR 10
Match: AT5G10350.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 248.8 bits (634), Expect = 4.1e-66
Identity = 133/210 (63.33%), Postives = 151/210 (71.90%), Query Frame = 0


Query: 5   DIDMIGSDNNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQGPLLIQCKLKMFK 64
           DIDM  +D +   EL +MK+RLKEME+EAAALREMQAKVEKEM + Q             
Sbjct: 25  DIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQAKVEKEMGATQD------------ 84

Query: 65  EMFTFWKKAHLDLMQKTGAYPASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQHFQSC 124
                               PAS AA+Q  +EEVD+RSV+VGNVDY+CTPEEVQ HFQ+C
Sbjct: 85  --------------------PASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTC 144

Query: 125 GTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQ 184
           GTVNR+TI  DKFGQPKG+AYVEFVE EAVQEAL LNESELHGRQLKV+ KRTN+PGMKQ
Sbjct: 145 GTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQ 202

Query: 185 YRPRRSNPFMGARSRSPYVAPYFFSPYGYG 215
           Y P R NP MG R R P+V PYF+SPYGYG
Sbjct: 205 YHPGRFNPSMGYRFRRPFVPPYFYSPYGYG 202

[Close]

BLAST of CmUC10G190950 vs. TAIR 10
Match: AT5G51120.2 (polyadenylate-binding protein 1 )

HSP 1 Score: 233.8 bits (595), Expect = 1.4e-61
Identity = 133/224 (59.38%), Postives = 164/224 (73.21%), Query Frame = 0


Query: 10  GSDNNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQG---PLLIQCKLKMF-KE 69
           GS + D   L+DMKKR+KE+E+EA ALREMQAK EK+M + QG    LLI   L ++  E
Sbjct: 48  GSSSRD---LEDMKKRIKEIEEEAGALREMQAKAEKDMGASQGLKLVLLIMILLWVYILE 107

Query: 70  MFTFWKKAHLDLMQ-KTGAYPASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQHFQSC 129
            F+       +L++ +      ++  S A +EEVDSRS++VGNVDY+CTPEEVQQHFQSC
Sbjct: 108 SFSESMNLSRNLLEFEYEKEIINSGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSC 167

Query: 130 GTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQ 189
           GTVNR+TI TDKFGQPKG+AYVEFVE EAVQ +L+LNESELHGRQ+KV+AKRTN+PGM+Q
Sbjct: 168 GTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPGMRQ 227

Query: 190 YRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPY 229
           +R  R  PF   R   P V   F+ PY YG+VPRFR P RY PY
Sbjct: 228 FR-GRGRPFRPMRGFMPGVP--FYPPYAYGRVPRFRRPMRYRPY 265

[Close]

BLAST of CmUC10G190950 vs. TAIR 10
Match: AT5G51120.1 (polyadenylate-binding protein 1 )

HSP 1 Score: 230.7 bits (587), Expect = 1.2e-60
Identity = 127/219 (57.99%), Postives = 149/219 (68.04%), Query Frame = 0


Query: 10  GSDNNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQGPLLIQCKLKMFKEMFTF 69
           GS + D   L+DMKKR+KE+E+EA ALREMQAK EK+M + Q P                
Sbjct: 48  GSSSRD---LEDMKKRIKEIEEEAGALREMQAKAEKDMGASQDP---------------- 107

Query: 70  WKKAHLDLMQKTGAYPASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNR 129
                            S   S A +EEVDSRS++VGNVDY+CTPEEVQQHFQSCGTVNR
Sbjct: 108 -----------------SGGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNR 167

Query: 130 ITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRR 189
           +TI TDKFGQPKG+AYVEFVE EAVQ +L+LNESELHGRQ+KV+AKRTN+PGM+Q+R  R
Sbjct: 168 VTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPGMRQFR-GR 227

Query: 190 SNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPY 229
             PF   R   P V   F+ PY YG+VPRFR P RY PY
Sbjct: 228 GRPFRPMRGFMPGVP--FYPPYAYGRVPRFRRPMRYRPY 227

The following BLAST results are available for this feature:

BLAST of CmUC10G190950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462875.1	5.0e-98	84.72	PREDICTED: polyadenylate-binding protein 2-like isoform X2 [Cucumis melo] >KAA00...	[more]
XP_038877304.1	6.6e-98	84.28	polyadenylate-binding protein 2-like [Benincasa hispida]	[more]
XP_011653388.1	1.1e-97	84.28	polyadenylate-binding protein 2 isoform X3 [Cucumis sativus] >KGN53719.1 hypothe...	[more]
XP_022140995.1	7.3e-97	83.41	polyadenylate-binding protein 2-like isoform X1 [Momordica charantia]	[more]
XP_008462873.1	3.6e-96	82.91	PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Cucumis melo]	[more]

BLAST of CmUC10G190950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJN9	7.6e-73	64.29	Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV...	[more]
Q9LX90	3.2e-71	63.84	Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV...	[more]
Q93VI4	1.6e-59	57.99	Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV...	[more]
O14327	9.4e-31	43.59	Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
Q9DDY9	2.8e-27	35.95	Polyadenylate-binding protein 2-A OS=Xenopus laevis OX=8355 GN=pabpn1-a PE=2 SV=...	[more]

BLAST of CmUC10G190950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V2R3	2.4e-98	84.72	Polyadenylate-binding protein 2-like isoform X2 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3CHX7	2.4e-98	84.72	polyadenylate-binding protein 2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0KXZ1	5.4e-98	84.28	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G110060 PE=4 SV...	[more]
A0A6J1CGQ3	3.5e-97	83.41	polyadenylate-binding protein 2-like isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A1S3CIE7	1.7e-96	82.91	polyadenylate-binding protein 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of CmUC10G190950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65260.1	5.4e-74	64.29	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G10350.1	2.3e-72	63.84	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G10350.2	4.1e-66	63.33	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G51120.2	1.4e-61	59.38	polyadenylate-binding protein 1	[more]
AT5G51120.1	1.2e-60	57.99	polyadenylate-binding protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 19..46
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 78..225 coord: 4..53
None	No IPR available	PANTHER	PTHR23236:SF79	SUBFAMILY NOT NAMED	coord: 78..225 coord: 4..53
None	No IPR available	CDD	cd12306	RRM_II_PABPs	coord: 102..173 e-value: 5.87181E-49 score: 153.216
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 102..173 e-value: 3.7E-23 score: 92.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 103..171 e-value: 1.8E-17 score: 62.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 101..177 score: 17.011795
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 95..181 e-value: 1.4E-27 score: 97.6
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 90..199

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC10G190950.1	CmUC10G190950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding