Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAATGGGTTTCCAATTTGTGTTGGTTTTAGCCTTATTTGCCACTTCTTGTATGGCTCAGGCTCCCGGTAGCGCTCCGGCTCAGCCGCCCACCACCCCCGCCGTCCCTCCGCCATCTACTCCTCCCCCAGCCGCCTCCCCACCTCCAGCCACCCCTCCTCCTGCAACCCCACCACCGGCCACCCCTCCAGTCGCAACCCCACCACCGGCCACCCCTCCAGTCGCCACCCCACCACCAGCTTCAACCCCACCATCATCACCGCCAGCTTCAGCTCCCACATCTCCCGCCCCAGCATCACCTACATCGTCTCCGAGCGCGCCACCAAAGGAGGGTCCGACCTCATCTCCAACTTCATCACCGCCATCACCACCACCGGAAGGAAATGTCCCTACGGGAAGCCCAGGACCGAGCCCGCCACCACCCCCACCCGAAGGAAATGGCGCAGCCAGCGTTAGCCGGGGAATGATGGTGGGTGGCGCAGTGGCCGGAGCTTTGTTGGCAATGGTATTTGCTTAG
mRNA sequence
ATGAAAATGGGTTTCCAATTTGTGTTGGTTTTAGCCTTATTTGCCACTTCTTGTATGGCTCAGGCTCCCGGTAGCGCTCCGGCTCAGCCGCCCACCACCCCCGCCGTCCCTCCGCCATCTACTCCTCCCCCAGCCGCCTCCCCACCTCCAGCCACCCCTCCTCCTGCAACCCCACCACCGGCCACCCCTCCAGTCGCAACCCCACCACCGGCCACCCCTCCAGTCGCCACCCCACCACCAGCTTCAACCCCACCATCATCACCGCCAGCTTCAGCTCCCACATCTCCCGCCCCAGCATCACCTACATCGTCTCCGAGCGCGCCACCAAAGGAGGGTCCGACCTCATCTCCAACTTCATCACCGCCATCACCACCACCGGAAGGAAATGTCCCTACGGGAAGCCCAGGACCGAGCCCGCCACCACCCCCACCCGAAGGAAATGGCGCAGCCAGCGTTAGCCGGGGAATGATGGTGGGTGGCGCAGTGGCCGGAGCTTTGTTGGCAATGGTATTTGCTTAG
Coding sequence (CDS)
ATGAAAATGGGTTTCCAATTTGTGTTGGTTTTAGCCTTATTTGCCACTTCTTGTATGGCTCAGGCTCCCGGTAGCGCTCCGGCTCAGCCGCCCACCACCCCCGCCGTCCCTCCGCCATCTACTCCTCCCCCAGCCGCCTCCCCACCTCCAGCCACCCCTCCTCCTGCAACCCCACCACCGGCCACCCCTCCAGTCGCAACCCCACCACCGGCCACCCCTCCAGTCGCCACCCCACCACCAGCTTCAACCCCACCATCATCACCGCCAGCTTCAGCTCCCACATCTCCCGCCCCAGCATCACCTACATCGTCTCCGAGCGCGCCACCAAAGGAGGGTCCGACCTCATCTCCAACTTCATCACCGCCATCACCACCACCGGAAGGAAATGTCCCTACGGGAAGCCCAGGACCGAGCCCGCCACCACCCCCACCCGAAGGAAATGGCGCAGCCAGCGTTAGCCGGGGAATGATGGTGGGTGGCGCAGTGGCCGGAGCTTTGTTGGCAATGGTATTTGCTTAG
Protein sequence
MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTTPAVPPPSTPPPAASPPPATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPASPTSSPSAPPKEGPTSSPTSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA
Homology
BLAST of CmUC10G190270 vs. NCBI nr
Match:
KAA0053440.1 (classical arabinogalactan protein 9 [Cucumis melo var. makuwa])
HSP 1 Score: 213.0 bits (541), Expect = 2.0e-51
Identity = 147/172 (85.47%), Postives = 156/172 (90.70%), Query Frame = 0
Query: 1 MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTTPAVPPPSTPPPAASPPPATPPPATPPP 60
MKMGFQFV+ LALFATSCMAQAPG+APAQPP+TPAVPPPSTPPPAASPPPATPPPATPPP
Sbjct: 1 MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP 60
Query: 61 ATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPASPTSSPSAPPKEGPTSSPTSS 120
ATPP ATPPPA +TPP S+PPS PPAS PTSP P+SP+S P+APPKEGP S PTSS
Sbjct: 61 ATPPPATPPPA----STPP--SSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPTSS 120
Query: 121 PPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA 173
PPSPPPEGNVPT SPGPSPPPPPPEGNGAASVSRGMMVGGAVAGA LAM+FA
Sbjct: 121 PPSPPPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 166
BLAST of CmUC10G190270 vs. NCBI nr
Match:
TYK14854.1 (vegetative cell wall protein gp1 [Cucumis melo var. makuwa])
HSP 1 Score: 213.0 bits (541), Expect = 2.0e-51
Identity = 147/172 (85.47%), Postives = 156/172 (90.70%), Query Frame = 0
Query: 1 MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTTPAVPPPSTPPPAASPPPATPPPATPPP 60
MKMGFQFV+ LALFATSCMAQAPG+APAQPP+TPAVPPPSTPPPAASPPPATPPPATPPP
Sbjct: 1 MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP 60
Query: 61 ATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPASPTSSPSAPPKEGPTSSPTSS 120
ATPP ATPPPA +TPP S+PPS PPAS PTSP P+SP+S P+APPKEGP S PTSS
Sbjct: 61 ATPPPATPPPA----STPP--SSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPTSS 120
Query: 121 PPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA 173
PPSPPPEGNVPT SPGPSPPPPPPEGNGAASVSRGMMVGGAVAGA LAM+FA
Sbjct: 121 PPSPPPEGNVPTSSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 166
BLAST of CmUC10G190270 vs. NCBI nr
Match:
XP_008455676.1 (PREDICTED: vegetative cell wall protein gp1 [Cucumis melo])
HSP 1 Score: 209.1 bits (531), Expect = 2.9e-50
Identity = 145/170 (85.29%), Postives = 154/170 (90.59%), Query Frame = 0
Query: 3 MGFQFVLVLALFATSCMAQAPGSAPAQPPTTPAVPPPSTPPPAASPPPATPPPATPPPAT 62
MGFQFV+ LALFATSCMAQAPG+APAQPP+TPAVPPPSTPPPAASPPPATPPPATPPPAT
Sbjct: 1 MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPAT 60
Query: 63 PPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPASPTSSPSAPPKEGPTSSPTSSPP 122
PP ATPPPA +TPP S+PPS PPAS PTSP P+SP+S P+APPKEGP S PTSSPP
Sbjct: 61 PPPATPPPA----STPP--SSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPTSSPP 120
Query: 123 SPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA 173
SPPPEGNVPT SPGPSPPPPPPEGNGAASVSRGMMVGGAVAGA LAM+FA
Sbjct: 121 SPPPEGNVPTSSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 164
BLAST of CmUC10G190270 vs. NCBI nr
Match:
KAG6600667.1 (hypothetical protein SDJN03_05900, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 170.6 bits (431), Expect = 1.2e-38
Identity = 137/182 (75.27%), Postives = 148/182 (81.32%), Query Frame = 0
Query: 1 MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTTPAVPPPSTPPPAASPPPATPPPA-TPP 60
MKMG QF++VLA ATS MAQAPG+APAQPPTTPAVPPPSTPPPAASPPPATPPPA TPP
Sbjct: 1 MKMGIQFLMVLACLATSSMAQAPGAAPAQPPTTPAVPPPSTPPPAASPPPATPPPATTPP 60
Query: 61 PATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPASPTSSPSAPPKEGPTSSP-- 120
PATPP ATPPPATPP ATPP A TPPS PPA+ PTSPA PTSSP+ PPKEGP SSP
Sbjct: 61 PATPPPATPPPATPPPATPPSA-TPPSQPPATPPTSPA---PTSSPTPPPKEGPASSPSP 120
Query: 121 -------TSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMV 173
T+SPPSPP EGNVP+G+PGP+ PPPPE NGA S+SR MVG AV+G LLAMV
Sbjct: 121 SPSPSPSTASPPSPPTEGNVPSGAPGPN-APPPPEDNGAVSISRVAMVGSAVSGVLLAMV 177
BLAST of CmUC10G190270 vs. NCBI nr
Match:
XP_023545089.1 (classical arabinogalactan protein 4-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 168.3 bits (425), Expect = 5.7e-38
Identity = 134/177 (75.71%), Postives = 147/177 (83.05%), Query Frame = 0
Query: 3 MGFQFVLVLALFATSCMAQAPGSAPAQPPTTPAVPPPSTPPPAASPPPATPPP-ATPPPA 62
MG QF+++LA ATS MAQAPG+APAQPPTTPAVPPPSTPPPAASPPPATPPP ATPPPA
Sbjct: 1 MGIQFLMLLACLATSSMAQAPGAAPAQPPTTPAVPPPSTPPPAASPPPATPPPAATPPPA 60
Query: 63 TPPVATPPPATPPVATPP---PASTPPSSPPASAPTSPAPASPTSSPSAPPKEGPTSSP- 122
TPP ATPPPATPP ATPP P S+PPS PPA+ PTSPA PTSSP+ PPKEGP SSP
Sbjct: 61 TPPPATPPPATPPPATPPSATPPSSPPSQPPATPPTSPA---PTSSPTPPPKEGPASSPS 120
Query: 123 --TSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA 173
T+SPPSPP EGNVP+G+PGP+ PPPPE NGA S+SR MVG AV+G LLAMVFA
Sbjct: 121 PSTASPPSPPTEGNVPSGAPGPN-APPPPEDNGAVSISRVAMVGSAVSGVLLAMVFA 173
BLAST of CmUC10G190270 vs. ExPASy TrEMBL
Match:
A0A0A0L0L1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G098710 PE=4 SV=1)
HSP 1 Score: 213.4 bits (542), Expect = 7.5e-52
Identity = 148/172 (86.05%), Postives = 156/172 (90.70%), Query Frame = 0
Query: 1 MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTTPAVPPPSTPPPAASPPPATPPPATPPP 60
MKMGFQFV+ LALFATSCMAQAPG+APAQPP+TPAVPPPSTPPPAASPPPATPPPATPPP
Sbjct: 1 MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP 60
Query: 61 ATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPASPTSSPSAPPKEGPTSSPTSS 120
ATPP ATPPPA +TPP S+PPS PPAS PTSP P+SP+S P+APPKEGP S PTSS
Sbjct: 61 ATPPPATPPPA----STPP--SSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPTSS 120
Query: 121 PPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA 173
PPSPPPEGNVPT SPGPSPPPPPPEGNGAASVSRGMMVGGAVAGA LAMVFA
Sbjct: 121 PPSPPPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMVFA 166
BLAST of CmUC10G190270 vs. ExPASy TrEMBL
Match:
A0A5D3CV77 (Vegetative cell wall protein gp1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold461G00250 PE=4 SV=1)
HSP 1 Score: 213.0 bits (541), Expect = 9.8e-52
Identity = 147/172 (85.47%), Postives = 156/172 (90.70%), Query Frame = 0
Query: 1 MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTTPAVPPPSTPPPAASPPPATPPPATPPP 60
MKMGFQFV+ LALFATSCMAQAPG+APAQPP+TPAVPPPSTPPPAASPPPATPPPATPPP
Sbjct: 1 MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP 60
Query: 61 ATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPASPTSSPSAPPKEGPTSSPTSS 120
ATPP ATPPPA +TPP S+PPS PPAS PTSP P+SP+S P+APPKEGP S PTSS
Sbjct: 61 ATPPPATPPPA----STPP--SSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPTSS 120
Query: 121 PPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA 173
PPSPPPEGNVPT SPGPSPPPPPPEGNGAASVSRGMMVGGAVAGA LAM+FA
Sbjct: 121 PPSPPPEGNVPTSSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 166
BLAST of CmUC10G190270 vs. ExPASy TrEMBL
Match:
A0A5A7UE17 (Classical arabinogalactan protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G001110 PE=4 SV=1)
HSP 1 Score: 213.0 bits (541), Expect = 9.8e-52
Identity = 147/172 (85.47%), Postives = 156/172 (90.70%), Query Frame = 0
Query: 1 MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTTPAVPPPSTPPPAASPPPATPPPATPPP 60
MKMGFQFV+ LALFATSCMAQAPG+APAQPP+TPAVPPPSTPPPAASPPPATPPPATPPP
Sbjct: 1 MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP 60
Query: 61 ATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPASPTSSPSAPPKEGPTSSPTSS 120
ATPP ATPPPA +TPP S+PPS PPAS PTSP P+SP+S P+APPKEGP S PTSS
Sbjct: 61 ATPPPATPPPA----STPP--SSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPTSS 120
Query: 121 PPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA 173
PPSPPPEGNVPT SPGPSPPPPPPEGNGAASVSRGMMVGGAVAGA LAM+FA
Sbjct: 121 PPSPPPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 166
BLAST of CmUC10G190270 vs. ExPASy TrEMBL
Match:
A0A1S3C1K1 (vegetative cell wall protein gp1 OS=Cucumis melo OX=3656 GN=LOC103495791 PE=4 SV=1)
HSP 1 Score: 209.1 bits (531), Expect = 1.4e-50
Identity = 145/170 (85.29%), Postives = 154/170 (90.59%), Query Frame = 0
Query: 3 MGFQFVLVLALFATSCMAQAPGSAPAQPPTTPAVPPPSTPPPAASPPPATPPPATPPPAT 62
MGFQFV+ LALFATSCMAQAPG+APAQPP+TPAVPPPSTPPPAASPPPATPPPATPPPAT
Sbjct: 1 MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPAT 60
Query: 63 PPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPASPTSSPSAPPKEGPTSSPTSSPP 122
PP ATPPPA +TPP S+PPS PPAS PTSP P+SP+S P+APPKEGP S PTSSPP
Sbjct: 61 PPPATPPPA----STPP--SSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPTSSPP 120
Query: 123 SPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA 173
SPPPEGNVPT SPGPSPPPPPPEGNGAASVSRGMMVGGAVAGA LAM+FA
Sbjct: 121 SPPPEGNVPTSSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 164
BLAST of CmUC10G190270 vs. ExPASy TrEMBL
Match:
A0A6J1J5L5 (classical arabinogalactan protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111482820 PE=4 SV=1)
HSP 1 Score: 159.1 bits (401), Expect = 1.7e-35
Identity = 128/175 (73.14%), Postives = 138/175 (78.86%), Query Frame = 0
Query: 1 MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTTPAVPPPSTPPPAASPPPATPPPATPPP 60
MKMGFQFV+VLALFATS MAQAPG+APAQPPTTPAVPPPSTPPP + PATPPP
Sbjct: 1 MKMGFQFVMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVA-------PATPPP 60
Query: 61 ATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPASPTSSPSAPPKEGPTSSPT-- 120
A ATPPPATPP A PP S PPSSP PT P PASP +SP+ PPKEGP SSPT
Sbjct: 61 A----ATPPPATPPPAVTPPPSQPPSSP----PTQP-PASPPTSPTPPPKEGPASSPTPS 120
Query: 121 -SSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA 173
+SPPSPP EG VP+ SPGP+ PPPPP NGAA+VSRG+MVGGAVAGALLAMVFA
Sbjct: 121 SASPPSPPSEGMVPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA 159
BLAST of CmUC10G190270 vs. TAIR 10
Match:
AT5G10430.1 (arabinogalactan protein 4 )
HSP 1 Score: 42.4 bits (98), Expect = 4.4e-04
Identity = 82/168 (48.81%), Postives = 93/168 (55.36%), Query Frame = 0
Query: 6 QFVLVLALFATSCMAQAPGSAPAQPPTTPAVPPPSTPPPAASPPP-ATPPPATPPPATPP 65
Q L+LALFATS +AQAP PT A PPP+TPPP A+PPP ATPPPA ATP
Sbjct: 7 QVFLMLALFATSALAQAPA------PTPTATPPPATPPPVATPPPVATPPPA----ATPA 66
Query: 66 VATPPPATPPVATPPPASTPPSSPPASAPTSPAPASPTSSPSAPPKEGPTSSPTSSPPSP 125
ATPPPA ATP PA+TPPS P SPA PT+SP AP EGPT SP+S
Sbjct: 67 PATPPPA----ATPAPATTPPSVAP-----SPADV-PTASPPAP--EGPTVSPSS----- 126
Query: 126 PPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA 173
+PGPS P P AA ++ G A A + A V A
Sbjct: 127 ---------APGPSDASPAP---SAAFSNKAFFAGTAFAAIMYAAVLA 135
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0053440.1 | 2.0e-51 | 85.47 | classical arabinogalactan protein 9 [Cucumis melo var. makuwa] | [more] |
TYK14854.1 | 2.0e-51 | 85.47 | vegetative cell wall protein gp1 [Cucumis melo var. makuwa] | [more] |
XP_008455676.1 | 2.9e-50 | 85.29 | PREDICTED: vegetative cell wall protein gp1 [Cucumis melo] | [more] |
KAG6600667.1 | 1.2e-38 | 75.27 | hypothetical protein SDJN03_05900, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_023545089.1 | 5.7e-38 | 75.71 | classical arabinogalactan protein 4-like [Cucurbita pepo subsp. pepo] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0L0L1 | 7.5e-52 | 86.05 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G098710 PE=4 SV=1 | [more] |
A0A5D3CV77 | 9.8e-52 | 85.47 | Vegetative cell wall protein gp1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... | [more] |
A0A5A7UE17 | 9.8e-52 | 85.47 | Classical arabinogalactan protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E6... | [more] |
A0A1S3C1K1 | 1.4e-50 | 85.29 | vegetative cell wall protein gp1 OS=Cucumis melo OX=3656 GN=LOC103495791 PE=4 SV... | [more] |
A0A6J1J5L5 | 1.7e-35 | 73.14 | classical arabinogalactan protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC11148... | [more] |
Match Name | E-value | Identity | Description | |
AT5G10430.1 | 4.4e-04 | 48.81 | arabinogalactan protein 4 | [more] |