CmUC10G189350 (gene) Watermelon (USVL531) v1

Overview
NameCmUC10G189350
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionReverse transcriptase domain-containing protein
LocationCmU531Chr10: 10594875 .. 10597683 (-)
RNA-Seq ExpressionCmUC10G189350
SyntenyCmUC10G189350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATTGGATGTGGACCCACTTGAAAGTTTGGAATCTCATGCCAATGGGTCTTACGAAGTTGTAGGTGTCGGGCCTTCTACTGCTGACAAGGTCGAAATCATAGTTGATAAAATAAAAGTCCAAAAGTGGAAACACATTCCTAATAAAGGGAGCTATGAGGGGGAGAATGATACAATTGAAATTCTTGGAGGGAACACACAAACAGCAGGAGGGTGTAGACAAGCATGAAGTTTCAAAAAAAAAAAAAAAATTCAGTGAATCTGTTGCCATTTAATTTTTATCGATGGAGGCTAAAGATCAGCCCCACCAATCACATTGAAAACCTTTTATTGGAAAATCCGTGGTGTGGGGAGTCCATGGACGTTCAAAGACCTAAAAGATCTTAGGCGTCTTCATGGTCCCCAAGTTGTGTTCCTTATGGAAACTAAGTGTGGAGTTAGTTATATGGAGGGAATTAAACGTTCATTTTTTTTTATAATTGTTTTGTTGTGGTAAGTAGAGGTAACAATGATGGTCTTGCATTGTTATGGAATAAAGAGGTTGATGTTACAATTAGATACCATATTGACTGTGATATTTTTGACGATGGAATCTGTTGGCATTTTTCAGGGGTATATGGATGTCCTAAATTCCAAAAGAAAAAACACACGTGTGAATTGTTATGGAGATTGAATAATAATGACGATTCTCCATGGTTGGTGGGGGTGATCTAAATGAATGTGGGAAGCTAAGAAGAAGTGGTGTTCGAAGTCAGTTTCATGTAATATGGAAATATTCAAAGAGATGATTCTTGACTTGCAACTTATAGATTTGGGCTTCTCAGGAAACATATTCAGATGGACCAATAGATGGAAAGGGGGATCTCGAATTTTCAAATGCCTTAACTAATTTTGGGCAGTGCTTCTTTTTGCAACCGTTTTAAATAGATAAAAGTGTCTAATTTTCCTTGGTCCTTTTTTTATCACAAGGCAATCTGTGTGGAGCTTAACGGTTCAGAGCTTTTGAGGGCTTACCATAAACTGTTCTGTTTTGAGAAATTTTGGGCAAGTGAAGAAGGGTGCAAATAAATTATTGCTTCATGTTGGGACAAGCCTCAGGAATCAAAGAAGGGATTTATTGAAACTATCAAGGAATGTGGCACACAACTGGATAAATGGGAAAACGCAAAAACAAAAATTTATTTACTAATATTGCTGGACACAAGGCTTATCTTTAACATGCTTATAATAGAAGACATGGCCCTAACTTTTCCGAAGTCAAATACAATGAAAGCCAACTTGATCAAGTCCTTGAGAAGGAAGAAAAGAATTGGAAACAATGATCTCGTGAAAATTGGTTTCGATGGGCAAACAGAAATACGAAGTGGTTCCATAAAACAACTTCTAACCAAATAGCAAAAAATTCTATTACTCGCCTGAACAAGGAAGATGGTGATTGGGTGGATTTAGATATGGAGTTGGAACATATTTTTCTATCCTATTACTCTCATATATTCATCTTCGTAAATCTTAATGAGTCTTAACTTTTAGGTGTCATCAATCTGGTTCCCAAGAAGGTTACGAGAAGAGATGAATAATATTCTTGCAACTTCTTTCATCAAGGAGGAAATCAAACAAGCTCTATTCCAAATGTTTCCCACAAAAGCCCCTGGTCCTAATGGCTTTCTAACTTTGTTTTATCATAATTATGTATTGGAATATTTTAAAACATCAATAGTGGAGTTTTGTCTACAAGTCCTTAATGATTGTTAATCGGTGAGTGCTCTTAATCATACTCATATCGCCTTAATCCTAAAAAAGAAGAATCCAACTAAGGTCTCTGATTTCTGCCATATTAGTATTTGCCATGTTTATTATAAGATTATTACTAAGACCATTACCAATAGACTAAATTAGTCCTTTCAGATGTAATTTTTTATTTCTAGAGTGCATTTATCCCTGGTCGACTCATTTATGATAACATTCTTGTGAATTACGAATGTGTTAATCATGAATTAGGAAAGGTAGGAAGGGGCAGGCTGCAATTAAGTTAGACACGAGTAAGGCGTATGATAGCATGGAATGAGTTTTCTTATGCAATATCATGCTTAAATTTGCCTTTAATGATTCTTCTGTGTCTCTTATCATGAATTTTGTGACTACTGGTACCTATTGTGTGTTGCTTAATGGGAGACCATGTGGGTTCATCAAGCCTTAGAGGGGTTTGAGACAGGGTGACCCTTTATCCTCATACTTATTTTTGATATTTGCTGAAGGCTTATCTAGTATGATTTCTTTTGCCAATCAATGTAATTTGCTCTAGGTTCAAGATTTCCAAACAAAGTCTTGTTATTTCTCACCTATTGTTTGCAGATGATAGTATTTTCTTTTACTAGGCTTCAAAAGAGGAGGGTGATGAGATAAAAGATATTTTGAAGCGTTACAAAGAGGGTTCGGGTCAGAGTGTCAATCTTTCTAAATTAGCTATTTTGTGCAACCCAAATGTTGGGATTGAAATTCACAAGGATTTTGGGAATATGCTCAATATTCATGTTGTATCTAATCTGGGCATTCCTTCCTACTTCTCTAGAAATAAGTCTAAAGACCTCAACATTATCAAAGAAAGAATTCATAAGATGTTAGCTGGATGGAAGAATGGTTTCTTTTCGATAGGGGGTAAGAAAATTCTCATCAAGGCTATTGCTCAGGTTATTCCAGTTTATGTAATGTCATGTGTCCTCCCTCTCACTTATGTGCTAAGCTATCTCGATGCATGGCTTGCTTTTGGTGGGGTTCTTCCTCGAACAAGTTCAAAATACATTGGATGA

mRNA sequence

ATGGAATTGGATGTGGACCCACTTGAAAGTTTGGAATCTCATGCCAATGGGTCTTACGAAGTTGTAGGTGTCGGGCCTTCTACTGCTGACAAGGCTTCAAAAGAGGAGGGTGATGAGATAAAAGATATTTTGAAGCGTTACAAAGAGGGTTCGGGTCAGAGTGTCAATCTTTCTAAATTAGCTATTTTGTGCAACCCAAATGTTGGGATTGAAATTCACAAGGATTTTGGGAATATGCTCAATATTCATGTTGTATCTAATCTGGGCATTCCTTCCTACTTCTCTAGAAATAAGTCTAAAGACCTCAACATTATCAAAGAAAGAATTCATAAGATGTTAGCTGGATGGAAGAATGGTTTCTTTTCGATAGGGGGTAAGAAAATTCTCATCAAGGCTATTGCTCAGGTTATTCCAGTTTATGTAATGTCATGTGTCCTCCCTCTCACTTATGTGCTAAGCTATCTCGATGCATGGCTTGCTTTTGGTGGGGTTCTTCCTCGAACAAGTTCAAAATACATTGGATGA

Coding sequence (CDS)

ATGGAATTGGATGTGGACCCACTTGAAAGTTTGGAATCTCATGCCAATGGGTCTTACGAAGTTGTAGGTGTCGGGCCTTCTACTGCTGACAAGGCTTCAAAAGAGGAGGGTGATGAGATAAAAGATATTTTGAAGCGTTACAAAGAGGGTTCGGGTCAGAGTGTCAATCTTTCTAAATTAGCTATTTTGTGCAACCCAAATGTTGGGATTGAAATTCACAAGGATTTTGGGAATATGCTCAATATTCATGTTGTATCTAATCTGGGCATTCCTTCCTACTTCTCTAGAAATAAGTCTAAAGACCTCAACATTATCAAAGAAAGAATTCATAAGATGTTAGCTGGATGGAAGAATGGTTTCTTTTCGATAGGGGGTAAGAAAATTCTCATCAAGGCTATTGCTCAGGTTATTCCAGTTTATGTAATGTCATGTGTCCTCCCTCTCACTTATGTGCTAAGCTATCTCGATGCATGGCTTGCTTTTGGTGGGGTTCTTCCTCGAACAAGTTCAAAATACATTGGATGA

Protein sequence

MELDVDPLESLESHANGSYEVVGVGPSTADKASKEEGDEIKDILKRYKEGSGQSVNLSKLAILCNPNVGIEIHKDFGNMLNIHVVSNLGIPSYFSRNKSKDLNIIKERIHKMLAGWKNGFFSIGGKKILIKAIAQVIPVYVMSCVLPLTYVLSYLDAWLAFGGVLPRTSSKYIG
Homology
BLAST of CmUC10G189350 vs. NCBI nr
Match: XP_023914218.1 (uncharacterized protein LOC112025766 [Quercus suber])

HSP 1 Score: 95.9 bits (237), Expect = 3.7e-16
Identity = 53/120 (44.17%), Postives = 71/120 (59.17%), Query Frame = 0

Query: 31  KASKEEGDEIKDILKRYKEGSGQSVNLSKLAILCNPN----VGIEIHKDFGNMLNIHVVS 90
           KAS EE   +K IL++Y+  SGQ +N  K  I  +PN       EI  +   M +     
Sbjct: 606 KASVEESQVLKHILQKYENASGQKINTDKSLIFFSPNTTQEAKEEILANLSPMQDTRHTK 665

Query: 91  NLGIPSYFSRNKSKDLNIIKERIHKMLAGWKNGFFSIGGKKILIKAIAQVIPVYVMSCVL 147
            LG+PS+  R+K++   I+KERI + LAGWK    S+GGK+ILIKA+AQ IP Y M C L
Sbjct: 666 YLGLPSFIGRSKTQVFAILKERIGQKLAGWKGKLLSLGGKEILIKAVAQAIPTYTMGCFL 725

BLAST of CmUC10G189350 vs. NCBI nr
Match: XP_023883747.1 (uncharacterized protein LOC111996043 [Quercus suber])

HSP 1 Score: 95.5 bits (236), Expect = 4.8e-16
Identity = 47/118 (39.83%), Postives = 72/118 (61.02%), Query Frame = 0

Query: 31  KASKEEGDEIKDILKRYKEGSGQSVNLSKLAILCNPNVGIEIHKDFGNMLNIHVVSN--- 90
           KA+ EE DE++ +L+ Y++ S Q +N +K ++  + N   E+ ++  N     ++     
Sbjct: 536 KATLEECDELQRLLEVYEKASSQQLNRAKTSLFFSGNTSREVQEEIKNQFGAQIIKQHEK 595

Query: 91  -LGIPSYFSRNKSKDLNIIKERIHKMLAGWKNGFFSIGGKKILIKAIAQVIPVYVMSC 145
            LG+PS   RNK    N IKE++ K+LAGWK    S  GK++LIKA+AQ IP Y+MSC
Sbjct: 596 YLGLPSLVGRNKRTSFNAIKEKLGKVLAGWKEKLLSKAGKEVLIKAVAQAIPTYIMSC 653

BLAST of CmUC10G189350 vs. NCBI nr
Match: XP_023878301.1 (uncharacterized protein LOC111990748 [Quercus suber])

HSP 1 Score: 95.1 bits (235), Expect = 6.2e-16
Identity = 52/120 (43.33%), Postives = 72/120 (60.00%), Query Frame = 0

Query: 31  KASKEEGDEIKDILKRYKEGSGQSVNLSKLAILCNPNVGIEIHKDFGNML----NIHVVS 90
           KA+ EE   ++ IL +Y+E SGQ +N  K +I  +PN   E   +  N+L    N     
Sbjct: 654 KAAYEECHLLRSILGQYEEASGQKINTDKSSIFFSPNTAQETRDEIFNILGPMQNSRHTK 713

Query: 91  NLGIPSYFSRNKSKDLNIIKERIHKMLAGWKNGFFSIGGKKILIKAIAQVIPVYVMSCVL 147
            LG+PS   R+KS+   ++KE++   LAGWK    S+GGK+ILIKA+AQ IP Y MSC L
Sbjct: 714 YLGLPSLIGRSKSQVFAMLKEKVGHKLAGWKGKLLSMGGKEILIKAVAQAIPTYTMSCFL 773

BLAST of CmUC10G189350 vs. NCBI nr
Match: XP_023901742.1 (uncharacterized protein LOC112013579 [Quercus suber])

HSP 1 Score: 92.8 bits (229), Expect = 3.1e-15
Identity = 51/124 (41.13%), Postives = 74/124 (59.68%), Query Frame = 0

Query: 31  KASKEEGDEIKDILKRYKEGSGQSVNLSKLAILCNPNVGIEIHKDFGNMLNIHVVSN--- 90
           KA ++E   +  IL RY+E SGQ +N  K ++  +PN   E+ +   N+L     S    
Sbjct: 539 KAKEQECHALVSILNRYEEASGQKINTDKSSVFFSPNTSQELRESIFNILGPMQDSRHSK 598

Query: 91  -LGIPSYFSRNKSKDLNIIKERIHKMLAGWKNGFFSIGGKKILIKAIAQVIPVYVMSCV- 150
            LG+PS   ++K++    +K+R+ K LAGWK    SIGG++ILIKA+AQ +P Y MSC  
Sbjct: 599 YLGLPSIIGKSKAQVFAEVKDRVAKKLAGWKGKLLSIGGREILIKAVAQAVPTYTMSCFQ 658

BLAST of CmUC10G189350 vs. NCBI nr
Match: XP_030479494.1 (uncharacterized protein LOC115696748 [Cannabis sativa])

HSP 1 Score: 92.8 bits (229), Expect = 3.1e-15
Identity = 47/120 (39.17%), Postives = 71/120 (59.17%), Query Frame = 0

Query: 31  KASKEEGDEIKDILKRYKEGSGQSVNLSKLAILCNPNVGIEIHKDFGNMLNIHVVSN--- 90
           KA+  E   I+++L++++  SGQ VN SK +I  + N  + I  D  N L + +      
Sbjct: 524 KATNAEATRIQEVLQKFEAASGQKVNFSKSSIFFSTNTALAIRNDISNFLGMTIAGENNL 583

Query: 91  -LGIPSYFSRNKSKDLNIIKERIHKMLAGWKNGFFSIGGKKILIKAIAQVIPVYVMSCVL 147
            LG+PS  SRNK+  L  +KER+ K + GW++ F S  GK++LIK +AQ +P Y MS  L
Sbjct: 584 YLGLPSTMSRNKTAVLGFLKERVRKRIQGWESKFLSRAGKEVLIKTVAQSLPSYAMSVFL 643

BLAST of CmUC10G189350 vs. ExPASy TrEMBL
Match: A0A7N2L6Z9 (Reverse transcriptase domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 5.2e-16
Identity = 54/120 (45.00%), Postives = 73/120 (60.83%), Query Frame = 0

Query: 31  KASKEEGDEIKDILKRYKEGSGQSVNLSKLAILCNPNVGIEIHKDFGNMLNIHVVSN--- 90
           KA++EE +++K+IL++Y+  SGQ VN  K +I  +PN   E+ +   N+L     S    
Sbjct: 569 KANREECEKLKEILEKYEAASGQKVNSDKSSIFFSPNTTPELKETIFNILGPMQDSRHNK 628

Query: 91  -LGIPSYFSRNKSKDLNIIKERIHKMLAGWKNGFFSIGGKKILIKAIAQVIPVYVMSCVL 147
            LG+PS   R+K      IKER+   LAGWK    S GGK+ILIKA+AQ IP Y MSC L
Sbjct: 629 YLGLPSIIGRSKKLVFAEIKERVGLKLAGWKGKLLSSGGKEILIKAVAQAIPTYTMSCFL 688

BLAST of CmUC10G189350 vs. ExPASy TrEMBL
Match: A0A803QE56 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 6.7e-16
Identity = 48/117 (41.03%), Postives = 68/117 (58.12%), Query Frame = 0

Query: 32   ASKEEGDEIKDILKRYKEGSGQSVNLSKLAILCNPNVGIEIHKDFGNMLNIHVVSN---- 91
            A++E     K IL++Y + SGQ VN SK  +     V  ++  D   +L + +V N    
Sbjct: 923  ATREACSYFKLILEKYSKASGQMVNFSKSEVCFGRTVQADLKMDIAELLGMKIVDNHGKY 982

Query: 92   LGIPSYFSRNKSKDLNIIKERIHKMLAGWKNGFFSIGGKKILIKAIAQVIPVYVMSC 145
            LG+PS+  RNK +  ++IK R+   L GWK   FS+ GK++LIKAI Q IP Y MSC
Sbjct: 983  LGLPSFVGRNKKQLFDVIKNRVWNKLRGWKGSMFSMAGKEVLIKAIVQAIPTYTMSC 1039

BLAST of CmUC10G189350 vs. ExPASy TrEMBL
Match: A0A5B7C6K9 (zf-RVT domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_045382 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.3e-15
Identity = 51/123 (41.46%), Postives = 74/123 (60.16%), Query Frame = 0

Query: 32  ASKEEGDEIKDILKRYKEGSGQSVNLSKLAILCNPNVGIEIHKDFGNMLNIHVVS----N 91
           A++E+  EI  I+  Y E SGQ +N  K A+  + NV +    +  N+L + V S     
Sbjct: 118 ATEEQALEISRIISLYGEASGQQINFDKSALSFSSNVPVSRKDEIKNILGVSVCSIHNKY 177

Query: 92  LGIPSYFSRNKSKDLNIIKERIHKMLAGWKNGFFSIGGKKILIKAIAQVIPVYVMSCV-L 150
           LG+PS   R+K +  NII+ER+ + L GWK    S  G+++LIKA+AQ IP Y+MSC  L
Sbjct: 178 LGLPSTIGRSKMQPFNIIRERVWRKLQGWKERLLSKAGREVLIKAVAQAIPTYMMSCFKL 237

BLAST of CmUC10G189350 vs. ExPASy TrEMBL
Match: A0A6P6U810 (uncharacterized protein LOC113708477 OS=Coffea arabica OX=13443 GN=LOC113708477 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.3e-15
Identity = 48/118 (40.68%), Postives = 70/118 (59.32%), Query Frame = 0

Query: 31  KASKEEGDEIKDILKRYKEGSGQSVNLSKLAILCNPNVGIEIHKDFGNMLNIHVV----S 90
           KA+ +E   I+DIL+ YKE SGQ +NL K A++ + N      +D    LNI  V     
Sbjct: 477 KATLQEARHIQDILQLYKEASGQEINLEKSAVVFSSNTDFSTRQDITQFLNIKEVVAHEK 536

Query: 91  NLGIPSYFSRNKSKDLNIIKERIHKMLAGWKNGFFSIGGKKILIKAIAQVIPVYVMSC 145
            LG+P+   R+K +  + IK+RI + + GW   + S GGK++L+KA+ Q IP Y MSC
Sbjct: 537 YLGLPTIIRRSKREVFSSIKDRIWQRIQGWNEQWLSKGGKEVLLKAVVQAIPTYSMSC 594

BLAST of CmUC10G189350 vs. ExPASy TrEMBL
Match: A0A6P6W173 (uncharacterized protein LOC113728935 OS=Coffea arabica OX=13443 GN=LOC113728935 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.3e-15
Identity = 46/118 (38.98%), Postives = 72/118 (61.02%), Query Frame = 0

Query: 31  KASKEEGDEIKDILKRYKEGSGQSVNLSKLAILCNPNVGIEIHKDFGNMLNIHVVSN--- 90
           KA +EE  E+  IL+RY++GSGQS+NL K ++  + NV  +  ++    L    V+    
Sbjct: 653 KAEREEASELIQILRRYEKGSGQSINLEKSSVFFSSNVDYQRRREVRQSLGTIQVATQGR 712

Query: 91  -LGIPSYFSRNKSKDLNIIKERIHKMLAGWKNGFFSIGGKKILIKAIAQVIPVYVMSC 145
            LG+P   +R+K +    IK+ I + +A WKN   S GGK++L+KA++  +PVY MSC
Sbjct: 713 YLGLPMVITRSKQQVFGYIKDSISRRMASWKNKLLSQGGKEVLLKAVSMAMPVYTMSC 770

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023914218.13.7e-1644.17uncharacterized protein LOC112025766 [Quercus suber][more]
XP_023883747.14.8e-1639.83uncharacterized protein LOC111996043 [Quercus suber][more]
XP_023878301.16.2e-1643.33uncharacterized protein LOC111990748 [Quercus suber][more]
XP_023901742.13.1e-1541.13uncharacterized protein LOC112013579 [Quercus suber][more]
XP_030479494.13.1e-1539.17uncharacterized protein LOC115696748 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A7N2L6Z95.2e-1645.00Reverse transcriptase domain-containing protein OS=Quercus lobata OX=97700 PE=4 ... [more]
A0A803QE566.7e-1641.03Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A5B7C6K93.3e-1541.46zf-RVT domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_045382 P... [more]
A0A6P6U8103.3e-1540.68uncharacterized protein LOC113708477 OS=Coffea arabica OX=13443 GN=LOC113708477 ... [more]
A0A6P6W1733.3e-1538.98uncharacterized protein LOC113728935 OS=Coffea arabica OX=13443 GN=LOC113728935 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36
NoneNo IPR availablePANTHERPTHR33116:SF45SUBFAMILY NOT NAMEDcoord: 31..149
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 31..149

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC10G189350.1CmUC10G189350.1mRNA