CmUC10G185960 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC10G185960
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	DNA-directed RNA polymerase
Location	CmU531Chr10: 4253364 .. 4269424 (-)
RNA-Seq Expression	CmUC10G185960
Synteny	CmUC10G185960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAACTGGGAAGAGCTCGGCGACGATACTCAGCTCTTTTTCCCTCTTCTCTTCTTCTTCTACCTTCTTCCCCTTTTTAGAACAACCCCTTTTCCCCATTTTGTTTTTCCCTTTTCCCTGTTCATTCCCCCCTGCTTTTCGTTTACTGTTTCACAGACTTCCCCCTTTGGCAGAGCAAGAAACTTCAAGAAATTTCGTTTCTGGGGTTGTGTGCTTTGGTTTCTGTGAAGCGTTACATTCATCAAGCTCCTGTTTTTCCCCTTACTTTGGAGTATGTTATCACTCTTTACTGTATTTGGATTTCTGGGTTGGAATGAGGTTTTTCCATGCATGTCTAAAATGTGTGATCTTTGCTTTTTTAAGACTGCATTGCATTTGGGTTTTCTGGGTTTTGTTGGTTTTTGGGATCATTGGGAATGGTGAATGTAATGGGTGTTTTGATGAAGTTTTTTTTTTTTTTTGTTTGGAAGATCAATTTTGATGGCTATATAGCATGTTGATCATGGAGTTTTGAGGTTTCTTAAGAGGAGCTTTAGGTGGTGGTCTTGCCCCAATTGTTAAAATTTGCCTATTAACGTGTTTAGCTCGTAGAGCTAAGGAAAGCAGAAGATTTATTTGACTGTTAAAGCATTCTTGATTCTGATTATGTTTCTTAATACATCAACATTCTACAAAGGGAAGGGCTTTGTTTGATTCTGTGATATCATGTTGTGTTGCTGATGTATGGATGCTTGTTTTCTGCTGATTATGTGCAAAATCAGTGCATGGCGCTTTAGTACTTTCTGCTGAGTTAGCAAGTTGATTTATGTAGAAAGTGTTTGTTCTCATGCATTTTTTCTATTTGAAATTTTAAAGGATGAGGCAAAGTTACAATAATTGAAGGCATAGCAGCTTGTCCTGACACATGGCGTACTGATCTATTAATCTTTCTGTTGAAGATAACTACTTATATCAAGGAGTTGCCTAATAGACATAGCTATTTATAGCATTAAATCATTTTGTGTCAATATTTTCATTTATAATCAATTGATAATTATGTGTATTGAATGAAAGAGAATGCGTTTTTGCTGCATTATAAAGTTGGACAAAAGTCACATGCATTTTTGTGTCCCTTCAACTTCTGGTCTTCTTATTTCGGGGCATTTCATCATGTACAAAAAGTTTGGGGCACTAGAGCAATTGCTTTTTCAGTTCATAAGGAAGAATGAATATGTCAGTGATCTATCTTATCAAATTCATTGGACTTCCCCAATCTGTTGAACTAAATGTGCTACCGTACTTCATCCACTTCTGTACACTGTAATGGTAGTTTTACTCATGCTGCTTAGTTTGTGAGCCACACATTTATTTTACTAGTGCGGAATGCCATTGCCAATTTTACCCAGGTCTTTTCTCTGCAATGTGTCCGAATAACTTGATCTTAACTTATTGTTAGTTGACTTTGTTCAATGGACATATGTTTTCTGTTACTTATTTAGTATTTGATAATTTCATTTACGGTTTTGTGATTTATGAATCACATGTTTATGGTAAATGGCAATGCTAATTTCACAACGTAAGAATCCATGCTCAATAAATGTGAATGCTGTGTGTGAGTTAGAGATAATGCCAAATATTTATTCTCTTTTCTTCATTAATGAAGATTTCCCCTTTCCTTTTCAAAAAGAAAAAAAAAATTGTGATATGCCAAAATTAGAAGCAATGTTTGTTCTTGATACATATTACACAGATACTATTAGTATGTCAATTTTTTCACTCATAGTTTTCTGGCTTATTGTAGTGAACTGTAAAAGCTTCAAAGATTTTGACATTCCATCATGAATATGAATTTGTTGTCCCATTTATTTCTCCAGGTGGTGAACTGGCTTGGGTGGGAGAAGAAGTTGTATGAGTTCTGCTGGAGACTTTCGGCCAGGCCAGAAGGTATAATTTTCAGGACGATATTGCAGTTTAGTCTTGAACCTGGTTCTAGAGTTGAATCATCCCTTTAACTTGTATTGTATTTAGCAACTCATTATCTATTTCTCTCGTTTAAATTTTCCACTTATGTCCCTTTTTACTAGAAGCTTCTAGAGTGTTAAGTCATTACCTTAGGCTAGTAGTACTAGTCTCTGCTTGTCTTTAGCATGTCTTAATGCCTTGCTATTCTTACATACTTGCAAAATCTTTGTTAGTTCATCTATTAGATTTTCCAACATCAATTGGTATTCTTCTTCTTGTCTTCTTCTTCTTCTTCTAGTGAAGTCTCAGTTTCAGGAATCTCCATAAAGATCAAGTTTTACTTAGCCTTCCAATATCCCCTTCTTGTCCATATTATTTTCTGTCCTCATAATTGTTTCTTGTCAAATAAAGGATCAAATGCTCTAGAAAAATTTTCATTAAATGTTATTATTGTGACTCTTTCTTTTGGGTTCCCGACCAACATCTCTCCATGCTTTCCTTCATGTTATAGATGCAATTTAGTTTATTTAATTTATTTCAAATGCACTAGGTGATGATCCATATGGACGATGAACAGGATGGTGAGCTACCAATTCCATCTGGTCTCGTTACTGGCATAAACTTTAGTGTCTCAACTCAGCAAGATACAGTAAGTATTTTAATTCTGATATAGTATCCTCATATACTGCTTTAGGAAGTCAATAATTTTCAAGACAATCAATTGTCAATAAGTGCGAGTGTAGGTTCAAGCCACAATGGACTACTTATCTAGGATTTAATATCCTATGAACTTCCTTGGTAATCAAATGTAGCCGGGTTAGGTGGTTATCTCATAAGAATAGTCAAGGAGCATGCAAGCTTGCCTCAAAACTCACAATGTAAACAAACAAATTATAACAATTCATATTGGTGAAGGGTTCAATCATAATAAGTAATAACCCAAGTTCAAGACTGGTTTGTGAATTTTAATGGTAAAGGAGTTTAATTGCAATAATTTCATAAGTGGGGGGGCATTGTTCAAATCTATAAAACTCATGGTGTGATTACTCTATATTGGAAGGTGAACCTTTTTTTTTCTTCTTCCTCTTTTTCCCTGACATTTATCTTAATTTTTATTCCATGTGCTTTTGTTTGTAAAGTAAGGCAATTTTTTTTTTTTCTATAAAAATTGTTGTTGGATAAAAAACCAAAGGTGCCTTAAACTTGTGAGTTTATACGTGCCTTTAATTTTGTATGGTGTCATGTTCATTACATACAGGATTTTATTTTTGATATTCTGATGTGAAAAGAAACTTTATCGATGTAACAGGAGAATATAGCAGTAATGACAGTTGATGCATCCAGCGAGGTATCTGATCCTAAGTTGGGACTTCCGAATCCATCTTATCAGTGCACCACATGTGGTGCTAGCTCCCTAAAATCTTGTGAAGGTAATTAACTAGTAACGTTACAAAGATGTTAACTTGTTAAATTTTCTCACACATGTGTTCTAACATTTTTGTTTGAATGGTTTTGGAAGGACATTTTGGGGTTATCAAATTCCCATATACTATAATCCATCCTTATTTTCTCTCGGAAGTTGCGCAAGTGTTGAATAAAGTTTGTCCAGGGTGTAAATCTATCAGGCAGGAACTATGGGGCAAGGTCAGGTACCTCACTTATTGTGATGAACCTTGAATTATTGTAATTAATTTAAAAGTTATGGCTTTCTGCTATTAAACAACGCAGTTATCTTGCCCATGTGGATATGTAGATAATTCTCGTTAAAAAATGTCTTTTCTTTTTTCCATCCATGTTCTGAGGAAAATTCTTTGAATTCTGATTCAATTGAAGAAAGATGTACAGGGGTTTTAGTACCCTCCGTCAGAATGTGCCTTACCACTCTCCCCACCCCACCCACTTATCTTACCCCTCCACAACCAGTTTGTCTTCACTCCTTTGGATCCAACTTTAGGTTTAACAAGAGGAGTTATTCACTCGATAAAGGACTCTCCACCTCATGGTGACCTCTTTGAGGTTGACTACGAGGTAAGTTTGAGTTGTATGGAATCAGTCATTTAGCCTGTGGATTTCAGTATGGAGTTTGATGTTGTTGAAGATTCTTTATCTGAAGCTTTTGACTTACTATTTTGGGATTGTGACAAGAGGACTCCTCCTCCTATTCCTTCATCCATGCCGGCCAAATTTGCTTCGCTGATGGAAGCTTGTGGTTTTGAGTTTTGTGAAATTCCTCCTTTCTCTCGAGAAAGAAGGCATGCCATGGTTTAGCTTTGCGAAGTTTTGTTTTTCTTTCATCTCTTAGACGTTTGGATTGACTTGCATGAGGAGATTTTTTATTTCTTTGCTGGGGATGGTTCTCCCAAAGCTTCTTTCAATGGGTTAAAGTTGTTGCAGAGGTGAAGAGTTTTTCCAGAAATGGTTTGAACTTTGGGAGTTCGATGGTATCCATCTATTTGGTATTGAGAAGCTTTCTGATTTCGTTGCAACAGGTTTCTTTATGATTGGTTATAAAAGGTTTTTTTTGGTTGGTTGGTAGTTGTTTCTTGGTTTTCTAGAAGAATTGAAGTAGCTATCAGTTTTCAGTGTTTGTTGGAGGCCTTACTTATAGTTTCATCGTTCATTCACAAGCTCCCTTAGTCTTACAGTCAAAGATTTTGGAAAAGTTCTTGGTTCTTTAAATGTTTATTTATTTTCTGGCCAATCTCTATAAGATTGTATTTGCTGTTTGTATTATTTCTTTTTCACTCCCGTTGGGAGTTTGTATCCCTGAACTCTTCTTCCTTTTCATTATATCAACGAGAAGTTGTTTCTTGTAAAAGAAAACATAATAAACAAACAAATAAATCAAAGGTATAATAGCGTGTTTAGAAGTGTTTCTAAGGGTATACTTGCATTTTTTTCTTCTTGTGCTTTTGAGTGGAAAAAACTGACCGCTTCTTCTAAAAGCACCCATGTCTCGTATGTAGCTGAATGCCATGAAAAATCAAAACACTTTTTTCAATTCATGAAAACCATGGGGTGGGTGGGTGGTTGATAGAAAAGGAATGGAGAAAAAAAAAAAAAAATAGAAACCAAGTGACTTATATTTATTCTTCCAAATGCCGGAGTTACCAAAAATCTAAACGAACTTTTCATTGATGTATTAAAAGATCAAAAATTTTTCTAAGATACAACAAACTCCTAAGTGGGGAGTAAAAAGGAAATAAAACACCCACATAAAGAACAAAAATCCAAATATTACGATAGTCTAGAAATAAAACGTTGAAGAACAAAGCACCAAAGATCTTGAAACCTCAAAGCCAAAGCCAAGAATTTGCAAAAGCACTATCCCATGAATGAAACCTCAAAGCCAAGATGAATTTGCAAAAGAAGCTCCTAACTCCCTACAAAGCTCCTGAACACTCAGGTGACTAGAGGAAGGAGCAGCCTACTTTGAACCTTCTTTGGAACATCTTTGGCAGAAGGCAAAAGGAGAAGGCTCCATTAAGAACTCCCCATAAGAATTAGCAACCCAAGAAGCAGTTATCCACTAAATTTAGACTTTAAATGAAATCGTAGACTGACAACACCAAGATATCTGGCCCATCTCTTGGAAAAAGACATTCGTTAGACTTGATCTGATGTGCTCATTTCTATGAAATTCTTTGAAAGGTCTCATAAATACAGCCTCAAGTTTTAAAGATGCCATGAGTTAACAAAGAATTCAATATTAAAACCATCAAGTCACAAGATCCATGCCTTATTAGCAGCTGAAAGAAAGCTAAGTTCTTTTTTTTTAAAATCATCATCACTATGAAAAAAAAGCTAAGCTCTTCAGTGAGTTTGAATTTCCTTTTTTTGAAAAGGAAACATCATTTTTTCATTCATCTACTGAAGAGGATGAATGATTAGCTTGAATATATGTCGAGTTGGTTGAATAGTAAGTCTCCATGCCGAGAAGTGAGCTGAGAAGTGAGAACTATTCTTATAATAGTTTCCTCTTGGCACACTTTATCTACACCCATTTGTAGTTTCTCCAATCTTCCCCCTTTATTTCTAATGGAGAGTCTTTTGTAGCTCGATTTGCTTGGCAGTGCATCTTTCCCACAGTCCCATTCTTAATTTATGTCTCTTCAATTGATGGAAATTTGTTTCTTATCAGGAAGGGGGAAAAAAAAAGAAAAGAAAAAAGAAAAAAGAAAAAAGAAAAAAAGATGTCATTGTGCCATTGGAACTCCACCCTTTGATATTTTTATCTGGGTTGGTTCAATATGGGACTAACCATGGTCACATATATAACTGCCTGGTGGTGGTGGTGGTAGCTTCTGCATTTTTTTTTCTGCATTTTTTTCTTAATCTAATCTAAGATTTATTTTTAAATTTGTATTTTGGTTCCCTTTACATGTACCAGGTTGAGGATCCAACATCTGAATATCATCGACCTAAAGGTTGCAGATATTGTTTTGTAAGTTCATTTAGCACACATTGTTTTATTTCTGTCTTAACTGTTTATCATTTCAAAACTGTTCTTGTGAAAAAGTTTTATTTGAAACCATGCTTTATATGGTGAACAGGGAAGTCTAAAGGATTGGTATCCGCCTATGAGGTTTAAGCTTTCAACTACTGATATGTTCAAAAAAAGTATGATTATGGTGGAAGTGAAAGAAAATATGTCGAAGAAATATCAAAAGAGGGTGGCTAAAGGAGGCTTGCCTTCAGATTATTGGAATTTTATCCCTAAGGATGAACAACAGGAAGAAAGTTATTGTAGACCAAACAGGAAAATCCTAACGCATGCTCAGGTATTGGGCCTCTTTATGCATCTGAGTCCTGACTATATTTAGTTTGTTCAATGTTTTCATCTGCGGAAATTTCCATTGTTTTCTCAATTTGTTGTCCTAATCGTCAGAAACCATTGTATTTCTTGATCACTGAACCCCATGAAACCCTGATTTGTTTAGTGATGTGATTAGTATGTTCTCTTTTCTTACTAAAGAAAAAAAGACAAGAAAAAAGAAATTCAAATCAGGAACCAGAGAGAGAGAGTGAGAGAGAAAGAGATGTGTCAAAATTATAAATGCATAAGCTCAACGACTTTAAAGATTATAAAAATAATAGATGTCCTAGTCTTTTACTTCATTGGACCCCTTTTCTAAAATGGGTGTTTTGTGGGCTTGATTTTTTATTTATTTATTTTTTAATGCCCTTGGGTGGCCTTTCATTTTTTTCAATGTAGTTATTTCAAAAAAAAAAATAAATAAATAAATAAATAAAATGTCCTGCCATCTAGTTCATGTCGTGTTGTGCTATTCTTGAATTTTTGTTGTTGTGCTTCTTATGTCTTAGGTCTTTTTTATCATTATCGTTATTTTAGTTTAAACTGTTCCCTTAGTATAATAATCTCAATCCCATCTTTAATTTATTGCTAAGAATAAGTGTTACCCCTAATTCTGACCCTAAGAAACTCTATGATGCTGATATTTGTATTAGTGCTTTCACTTTCAATTTTACCATTAGCATGTTGCGGTTTTTAGTAGGTTTTCTATTTTTTTATTATTTTTTAAATATATATTATAACTTTGAAAAAGAGTAAGTGGATGAACTAAAAAAAGAAAGTGAAAGTGGACGAACTTTGCAGTTTTGAAAACCTTGAACAAATTGGAGAGTTTAACGAATATTATAAACTAGTGGAGTTTGTTGTCTGTAATGTGTTGCTCTAGTCACTACTGATGCATTTCAAAATTAACTTGGCTTCAATTTTATAATTTTGAGGTATCTTTGTCATTCATACCTTACCCATTTCATTCTGGCAACTGCAAATCTTTTGCATTATTGTAAACCTGTAATATTTTCCTTCCCTATAATGATACAATATTTAAGTGATACGTTTTTCTTGGATTTCAGGTTCATTATTTGTTGAAAGACATTGACCCAAAGTTTCTCAAAAAGTTTGTGCCTGCAATAGATTCACTGTTTCTAAACTCTTTCCCTGTTACTCCAAACAGTCATCGTGTGACTGAAATGACACATTCATTTTCAAATGGACAGCGATTGATCTTTGTAAGACTTTTCTTCTTACTGCCCTGTTGTTAGGTTGATGACTGACGCTATTCAAATGGAAGGATGTTTGAATGACATTTGCCTCTTTCTAACGTGTTGCTTTTAAACATGTTTGATTTAAGGATGAAAGGACCAGGGCTTACAAGAAAGTGGTTGATTTCAGAGGGACAGCTAACGAGTTAGGTTCTCGCGTTCTCGATTGTCTCAAAATTTCGAAGGCAATTTACAATATCCTTTTCTTTTGCCTTAATCATGTTAATTATTATGTGAAACTTTTGCTCTTGCTTATATTGTCACTTCTTCTATGCAGCTTAGCCCAGAGAAGTTACAGAGTAAAGATTTGGTTTACCAGCAAAAGAAAATTAAGGATACTGCTACTAGCTCATATGGTTTAAGATGGATCAAAGATGTTGTTCTTGGAAAGCGGAGTGACCATTGTTTTCGCATGGTTGTTGTTGGCGATCCAAACATTGAGTTAAGTGAAATTGGCATACCATGTCATGTTGCAGAGAGGTTGCAAATATCTGAACATCTGAGTTCTTGGAATATGAAGAAATTAAGTACTTCTTGTTACCTTCATCTTGTTGAAAAGGGAGAGATCTTTGTTCGTCGTGAAGGTCGTCTAGTTCGTGTACGTAATGTTCTTGAACTTAATATGGGGGACACTATATATAGGCCCCTAGCTGATGGGGATGTTGTGCTGGTTAATCGACCACCATCCATACATCAGCACTCACTTATTGCTTTATCTGTCAAGCTTCTTCCTGTCTCCTCAGTTCTTTCCTTAAACCCACTTTGTTGTTCTCCTTTCCGTGGAGATTTTGATGGTGACTGCCTTCATGGTTATGTTCCTCAATCACTCGAAGCCCGAGTGGAAGTTAGAGAGCTGGTTTCTCTAGATAGACAGCTAATTAATGGCCAAAGTGGTAGAAATCTGCTGTCACTTAGTCATGATAGTTTAACTGCTGCTCATTTAATTATGGAAGATGGAGTTCCGTTAAATCTTTTCCAGATGCAGCAGTTGCAAATGCTCGCTTTACATCAGTTGTTGCCCCCAGCAATTTTAAAAGCTCCTTTGCTTAGAAATTGCGCTTGGACTGGTAAACAGTTATTCAGCACCCTCCTACCTCCTGATTTTGATTATTCTTCTCCTTCTCACTGTGTCCTTATTGAAAATGGAGAATTAATATCTTCGGAAGGATCTTACTGGCTCCGCGATAGTGGCAGAAACCTCTTCCAAGCGCTAATAGAACACTGTGAAGGCAAGACCCTTGACTACTTGCACGATGCTCAAGGGGTTCTTTGTGAATGGTTATCAATGAGGGGCTTGAGTGTTTCATTGTCAGACTTGTACCTATCCGTGGATTCATACTCTCACAAAAACATGATGGATGATATCTTTTGTGGGTTACAGGAAGCTGAGGAAACATGTAATTTAAAGCAGCTGATGGTGGATGCACATAAAGATATCCTTACTGAAGATGACGAAGATAATCAACACGTGTTGTCTATTGCTGTGGATCGTTTAAGTTATGAGAAGCAGAAATCTGCTGCTCTAAATCAAGCTTCTGTTGATGCTTTCAAGAAAGTTTTTCGTGATATACAAAATCTAGTTTACAAGTATTCTGGTAAAGACAATTCACTTCTTACCATGTTCAAGGCTGGAAGCAAGGGTAATTTGCTAAAACTAGTTCAGCATAGCATGTGTCTTGGCTTGCAACACTCTTTGGTTACTCTATCCTTTAGCCTTCCACATAAGCTTACGTGTTCTGCATGGAACAGCCAGAAGATGCCTCGTTATACTCAGAAGGATGGTCTTCCTGACCGTACGTCGTCTTTCATACCATATGCTGTGGTTGAAAGTTCCTTTCTCTCAGGGCTTAATCCGTTTGAATGTTTTGCTCATTCGGTGACAAATCGAGATAGCTCTTTCAGTGACAATGCTGAAGTTCCTGGCACTTTGACACGAAAACTTACATTCCTAATGCGGGATATATATACTGCATATGATGGAACAGTGAGGAATGCATATGGAAATCAGCTGGTTCAGTTTTCTTATGACATTGATAGACCTACTAGCATCTCTAATGAATTGGATAGCGAGAACAATAATAGAGATCATGATATAGGTGGTCATCCTGTTGGGTCATTGGCTGCCTGTGCCATGTCAGAAGCTGCATATAGTGCTCTGGACCAACCAATTAGTCTACTTGAAGCTTCCCCATTGCTAAACCTAAAGGTACAATAGCCTTCTCCTCTCAATGTAACAATTTAAGTCAAGGATTTGGTAAATATATATATTATTTTTATTATTCTATTATCTGTTTGTTGAATCACCAATTAACTGATGGGTTTTGATAGAATAAATCTTATATTCAAAGACTCTTGGAATGGCATTTATCAATAACCACATGTTGGGCATTATGGAAATTTTAAGTCCACAAGTGTGGAAGAGTGTTAAAGTTTCAACATAAAATAATTAAATTTAACAGTAGCCCTTAAACTTAAGCTTTTGGGTTTAGTGTTGATTTAACCATTTGCAAAGTATTTTTATGTTTTTTTCTACATGCTATATATTTGAAAACAATTTTTAAAACTCATCTTACCCAATGAGTTTTCTACCTTAAGAAACCTTTTTTTTTTTTTTTTAAATGGTTGAAAAGTTCTCTAGTATTTAGAAAACATACTAGAAAACTTTTCAAGCATAACTTCTAAACAGGTCTCTAGTTTCTGATACCAAGACTAATGGTTGTGATATATTTGGCTTATGCAGAGAGTGCTGGAGTGTGGTTCAAAGAGGAATAGTACCAAACAAACATTTTCATTGTTCTTATCAGAGAAACTTTCTAAACGAAGTTATGGATTTGAGTATGGAGCATTAGGAGTTAAGAACCATTTAGAAAGAGTAATGTTTAAAGATATTGTGTCTAATGTCATGATAATGTAAGTTATATATTTTCAATGCTTTTTATATTTGTTGTCAGCTGTGTTTATAGTATCTTTTGATTGACATTATTAGCGATGTTTTCTATGGATATTAGCTTCTCCCCACAGCCCTCCCGGAAAAAGCATTTTAGTCCTTGGGTTTGCCACTTTCATGTATGCAAGGTAATGCAATCTGGAACCTGTCTTTCTTTATATGACGCAAGTGTATACTGTTAGTGTCCTCTGTATCTGGTATCAACTATAATTTATCCATCCAGGAAATTTTGAAGAAAAGAAGATTGAAGATGAATTCTGTCATCCATTCCCTTAATATGCGGTGTGACTCTGTGAGACAAGAAGGAAGAATGAATTTGCCCTCTTTGCAAATAATAACCCAGTATGTTCCTTCTTCAATTGACATTTAGAGTTGGTTCCCTTTCACTAAATATTCTCTATTTGGGCTTTTCTATCAAAGCAAGTTAACTTTTGTAATCTCACTTGAGCTGTATGTCGTTTTGTGGCTTGGCTGATAAGGGATTGTCCTCTAGCTGATTCACTGAGAGAAGATGGTGATACGGTGTGCTTAACTGTTACAATAGCTGAAAACACAAAAAACTCTTTCCTGCAATTAGATTTCATTCAAGATTTGCTGATTCATTTCCTTCTTGGTACAGTTATAAGAGGTCCGTACTGTTTGTTACCTTGCAATAATTAATGTGCATTTCCACACACACATGGCCAGTCTGAATAGCTGATGTTTTGACTTGATAATATTTCATTATCTAAACTTATCATTGGCGTTTGTCTTTTCTTGAATTTAGAGCTGAAGTCGCTATGTGTTAAAAATGTCTTCATTGATTCGTTTTTTTTAACATTTTCCATAGATTATTGGGTATAATTGGTGTGCTTTAGTTCTGGGCACCTGGGTCATTCTATTTGTATAATCTGTAAGGTAGGAGTGACCGAAGCTGTAGGGGAGTAGAATTTTGGGAAAAAAGGGCTTTATTTTGAGAAGGCCTAAGACAAGGTTGATTGGTCACATGAATTGAGCTTTAATGGAGAATGTGGAAGAGTGTTTTCTTCTTCAAAATTACTCTTTATCATGCCATTCCTGAGTGTGCCCAGCTGGAAGGGTTTTTATTTATTTATTTTATTTTTTTATAATTCATGTCTGTCCTTTTCGTTGCCCCCTTGTTAGCTTTTTGTGCATTCTTTTTGTGAAAATTATTTGTTTTCTTTTATTGAAGTTATAAAGAGAAAACATATAATGTAATATGCCTTACATTTGACGAGATTTAAATGATATTTTCATTAAAATTGCTATGTTTCTCTTGATTTCTCGCTGTTTCAACTGGCATAACCTTTTTGAAATACCAAGGGACTTTGTAAGATGGTCCGGCATTTGCTTGAGTAAGTTTGTTATTTGGCTAGATTTACCAAAAACTTATGTTTTCTTTTCCTTTGGTATTTGCATTAGGCTTTGCTGAGATTGACAGAGTAGACATTGCATGGAATGACCGACCGAAGGTACCAAAACTTCGTTGTAACCATGGTGAGCTCTACTTGCGGGTGACCATGTCTGGAGAAGGAAATTCAAGATTTTGGGCAACTCTTATGAATAATTGCCTCCCTGTAATGGATTTGATTGATTGGTCTCGTAGTCATCCAGATAACACCCATAGTCTCTGTTTGGCATATGGAATAGATTCTGGATGGAAGTACTTTCTCAACGTGTGTATTTCTGTCCATTACCTTTCTGACAAGTTCGGCTTTGGTTCTTGCATCAGGAACTTTTGCATGCTTCTAATCTAACCATTCAAATATTTTAATGCAGAGTTTGGAGTCTGCAACGTTGGATATTGGTAAAACAATACGTCTTGAACATTTGCTGCTTGTTGCAAATTCTCTTTCGGCTACAGGAGAGTTTGTTGGCTTAAATGTGAAAGGATTGTCACATCAAAGGGAACATGCTTTGGTCAAAACACCCTTTATGCAAGCTTGCTTCTCGGTTAGTTATCTACTTGCTTATCTCATTTGAATCATCATAGTGAGCAAGCAGTGAATTTAAATTTAATCCATGGTTGGTTTTCTGCAGAGTCCTGGTGCTTGTTTTGTTAAAGCTGCCAAGGCTGGAATTAAGGACAACCTGTCAGGAAGTTTAGATGCCTTGGCATGGGGGAGAATTCCTTCGCTGGGAACCGGGGGACAGTTTGATATCCTATATTCTGGGAGGGTGAGATTATATGTTCCGACTTCATATTCAAAAACAAAATGTTTCAGCTCATAGATGCTTAAGACAAAAAAAATGTTTTTATGGGATTTCAGAAGTATTCCTTTGTTTTTTTATTAGGTAACAATTTCATTGATGTTGTGTGCGTGCAATCTTTTGAATTATATCTGTTATTTGGAATACGGTTTAAGCTAATGAGTTTTCAAACGTGTGGTAAATGAATTCACGATAATCCTAAGATGTTTGTCTTCTAATAATAAAAATGTTCCTATTTCATAGATGTGAGGATTTCTTCTCCTGCTAAGATTCCACGTTATAGGCTTTTTGTTCTTATCCTCCTACTGACTCTTGCAGGTCTCTTTAATATTATACGTACATGTATGCATATATATTATATTTAACCATTAGTTTGGTCACATAATTACGGTGCTTCTTGTTCAAGTTTAGCGCGGCATTTTTTTTCTTTTGTTATTGAAATGTTGTTAATGAGTATACATAAAAATATCCAATTTATCCAAAAAAAAAAAAAAAAAAGAAAAAAAAATCAAAGTTCAAACCATGAGTGATAATTAAAATGTATACTATATTATCTCATTCTAGATGCATGGAAATTTTTATTTCTACCAGTCTATTTAATGGTCGCTGTGCGTGTTATCTGTTGCTTCAGGTTTTTGCGGTACTTCAGCTATCTAATGGTTTCAAATTGTTCTTACTCTTCAGGGGCATGAGCTTAATAAGCCTGTCGATGTTTATAATCTACTGGGTGGCCAAAGCATTTGTGAGAAGCAGAATGCAAAGATCGAATCCCTTGATAAGAACAATATATCTGAGAAATATAGTGCTCAGTTAGTGCTTAAAAATGGTGGTTCTACCATTAAAGGACTTAAAAAGCTGGATAGTGTATCTAAATCAATTTTAAGGGAATTTTTGACACTGAACGATATTCAGAAGCTGTCGTTTGCATTGAGAACCATTTTACACAAGTTAGTTCTTCCTCTTTGGGCACTGCTCAGCTCTTACAATTGGCATCATTTCATTAGATGTGTCCTTTTTTCTATTTGGACATTTTATTTTATTTATTATTTCCATTTCGGAAAGAAAATAAGAAAACACCAATCCATGTTCTAGCTTAATGAATAATTGTTTATTGCTTGAAAATCACTTACATAGTATCTCAGATTGTTCCTTTTTAAAATTTCGAATGTTGCTGAAATGCCATATGCAGAATGGAGTCGGAGTTCTAAAAGGTTTCACTTTTGTGTGTAGGTACTCTTTAAATGAAAGATTAAATGAAGTGGACAAATCAACTTTGATGATGGCTTTATACTTTCATCCTCATAGGGATGAAAAGATTGGTGTTGGAGCACAGGACATAAAGGTATTTTCTATAGAAGATGAAACTCTTTTGGCGTATTGCATCTATCCCCCCTCCCTGAACCCCTAAACAGAAATAATATAATAAACAAAGAAAGGAGAAACAAGAACAAGTTTCTTTTGTGATTCATACCTTTTTATCTTCCTTTGCTCTTGGCAATATTCTGCTTTTCATTCTTGTCCAGGTTCCAGCAATTATGGACAGACTTTTCTTTTGAATTTTTTAGTTCGATAATATGTGGGGGTGCGGGGATTCGAACCTTTGATGTGTAGGTCAGCTGTGCATGTTAGTTGAGCTATGCTCAAATTAGTGACTTTTCTAAACAAGGGAGAAAATCCTTGTAGGATGATAGAGATCTGGGAGTTGGAACTTTGCCTGGTGGAAACGGAGCATTTTAGAGTAGTTTAACTAGATGTAAGATCCCATTATTTTCTTGTGCAGCCCGCTATGCAATGTTTATTTTCTTTGGGATCAATATCTAAGGTGCGGCTCAGTGGCAGGCTCAAAAAGGTTAGATAGGCCGGAGCCCAGGAGAAGTCATCTCATTGACTGCCTTTCAGACCGAGAGCTATTAAGCATTGTTTATGTTTACTGGAAGCCCAAGAATTTGTTTGAAGAATAAGCACCACTTTGAGCATATTATTTATTTACTGTACCACGAGGTCCTATGGTGCCCCGTGAGGGTGACAGTATGCAGTTTCACATCCATATGATGAAGATGAACATGTCTTGAGGCAACTGAATGTTGAGTGCCTAAGAGGAGCAAGTGGACACTTGTTCCTTGTCTCCAATCTTGTGAAGAGTCTCAGCTCCAATCCTACCCCACAGTATTCCATTTTGGCTCTCACTAGCTATTTTCTGGGTCTGTACAAAGAGCATCCCCACAGGGTTTTAACCTCTGACCTTTCATAGAATTGGTTGGCCCAGCTATTAGAACTTGACTTTGGTAACACACTAGGTTGATGTTGAACAAGTATAGAGTTTCATGGCTTCTTATAAGGATGGATTTTAGAATTAAAAAGAGCACAAGTTCTAGTCACCCTTAGCTTAAGTTCCATTGTTTTCGACATAATTGAACCACATGAGATGTTATTACCTTCTCTTTTGCCATACAGTCAAGGTTACAATAAAAAATCTGATTGGATCTGAATGCACAAGTAGAAATATGTAGTAAGAAATTCAACTCTTTCAGCTCTCTGAAAATGGTCTACATCAGACTGGATTCTGCCCCCAACCAGGACTCAGATAGGACTTGGCTTGCAAAAGGAGACGAGATTAGAATAAAGTGCAGTTGGTGAAATAGGTGGTTCACTACATGTCCAAGCATCTGACTAATATCAGTGACCTAAAGGAGAGTGAGGTTCATCGTTCATGCAATGGGTTCTTCAAGTGAGGCAGTAGGGATCCAGTTGGTCAGCTGATGACACTGGGGAAGACAAATTACAGTCACTTCAAAGTAGTACTTTAATTCTTAAATTTCAGATTCTAGCTTCCCTCAGAAGCAGGATCCAGTTGGTCAGCTGATGACACTTGCTGGTGGAGACAAATAA

mRNA sequence

AAAGAACTGGGAAGAGCTCGGCGACGATACTCAGCTCTTTTTCCCTCTTCTCTTCTTCTTCTACCTTCTTCCCCTTTTTAGAACAACCCCTTTTCCCCATTTTGTTTTTCCCTTTTCCCTGTTCATTCCCCCCTGCTTTTCGTTTACTGTTTCACAGACTTCCCCCTTTGGCAGAGCAAGAAACTTCAAGAAATTTCGTTTCTGGGGTTGTGTGCTTTGGTTTCTGTGAAGCGTTACATTCATCAAGCTCCTGTTTTTCCCCTTACTTTGGAGTGGTGAACTGGCTTGGGTGGGAGAAGAAGTTGTATGAGTTCTGCTGGAGACTTTCGGCCAGGCCAGAAGGTGATGATCCATATGGACGATGAACAGGATGGTGAGCTACCAATTCCATCTGGTCTCGTTACTGGCATAAACTTTAGTGTCTCAACTCAGCAAGATACAGAGAATATAGCAGTAATGACAGTTGATGCATCCAGCGAGGTATCTGATCCTAAGTTGGGACTTCCGAATCCATCTTATCAGTGCACCACATGTGGTGCTAGCTCCCTAAAATCTTGTGAAGGACATTTTGGGGTTATCAAATTCCCATATACTATAATCCATCCTTATTTTCTCTCGGAAGTTGCGCAAGTGTTGAATAAAGTTTGTCCAGGGTGTAAATCTATCAGGCAGGAACTATGGGGCAAGTACCCTCCGTCAGAATGTGCCTTACCACTCTCCCCACCCCACCCACTTATCTTACCCCTCCACAACCAGTTTGTCTTCACTCCTTTGGATCCAACTTTAGGTTTAACAAGAGGAGTTATTCACTCGATAAAGGACTCTCCACCTCATGGTGACCTCTTTGAGGTTGACTACGAGGTTGAGGATCCAACATCTGAATATCATCGACCTAAAGGTTGCAGATATTGTTTTGGAAGTCTAAAGGATTGGTATCCGCCTATGAGGTTTAAGCTTTCAACTACTGATATGTTCAAAAAAAGTATGATTATGGTGGAAGTGAAAGAAAATATGTCGAAGAAATATCAAAAGAGGGTGGCTAAAGGAGGCTTGCCTTCAGATTATTGGAATTTTATCCCTAAGGATGAACAACAGGAAGAAAGTTATTGTAGACCAAACAGGAAAATCCTAACGCATGCTCAGGTTCATTATTTGTTGAAAGACATTGACCCAAAGTTTCTCAAAAAGTTTGTGCCTGCAATAGATTCACTGTTTCTAAACTCTTTCCCTGTTACTCCAAACAGTCATCGTGTGACTGAAATGACACATTCATTTTCAAATGGACAGCGATTGATCTTTCTTAGCCCAGAGAAGTTACAGAGTAAAGATTTGGTTTACCAGCAAAAGAAAATTAAGGATACTGCTACTAGCTCATATGGTTTAAGATGGATCAAAGATGTTGTTCTTGGAAAGCGGAGTGACCATTGTTTTCGCATGGTTGTTGTTGGCGATCCAAACATTGAGTTAAGTGAAATTGGCATACCATGTCATGTTGCAGAGAGGTTGCAAATATCTGAACATCTGAGTTCTTGGAATATGAAGAAATTAAGTACTTCTTGTTACCTTCATCTTGTTGAAAAGGGAGAGATCTTTGTTCGTCGTGAAGGTCGTCTAGTTCGTGTACGTAATGTTCTTGAACTTAATATGGGGGACACTATATATAGGCCCCTAGCTGATGGGGATGTTGTGCTGGTTAATCGACCACCATCCATACATCAGCACTCACTTATTGCTTTATCTGTCAAGCTTCTTCCTGTCTCCTCAGTTCTTTCCTTAAACCCACTTTGTTGTTCTCCTTTCCGTGGAGATTTTGATGGTGACTGCCTTCATGGTTATGTTCCTCAATCACTCGAAGCCCGAGTGGAAGTTAGAGAGCTGGTTTCTCTAGATAGACAGCTAATTAATGGCCAAAGTGGTAGAAATCTGCTGTCACTTAGTCATGATAGTTTAACTGCTGCTCATTTAATTATGGAAGATGGAGTTCCGTTAAATCTTTTCCAGATGCAGCAGTTGCAAATGCTCGCTTTACATCAGTTGTTGCCCCCAGCAATTTTAAAAGCTCCTTTGCTTAGAAATTGCGCTTGGACTGGTAAACAGTTATTCAGCACCCTCCTACCTCCTGATTTTGATTATTCTTCTCCTTCTCACTGTGTCCTTATTGAAAATGGAGAATTAATATCTTCGGAAGGATCTTACTGGCTCCGCGATAGTGGCAGAAACCTCTTCCAAGCGCTAATAGAACACTGTGAAGGCAAGACCCTTGACTACTTGCACGATGCTCAAGGGGTTCTTTGTGAATGGTTATCAATGAGGGGCTTGAGTGTTTCATTGTCAGACTTGTACCTATCCGTGGATTCATACTCTCACAAAAACATGATGGATGATATCTTTTGTGGGTTACAGGAAGCTGAGGAAACATGTAATTTAAAGCAGCTGATGGTGGATGCACATAAAGATATCCTTACTGAAGATGACGAAGATAATCAACACGTGTTGTCTATTGCTGTGGATCGTTTAAGTTATGAGAAGCAGAAATCTGCTGCTCTAAATCAAGCTTCTGTTGATGCTTTCAAGAAAGTTTTTCGTGATATACAAAATCTAGTTTACAAGTATTCTGGTAAAGACAATTCACTTCTTACCATGTTCAAGGCTGGAAGCAAGGGTAATTTGCTAAAACTAGTTCAGCATAGCATGTGTCTTGGCTTGCAACACTCTTTGGTTACTCTATCCTTTAGCCTTCCACATAAGCTTACGTGTTCTGCATGGAACAGCCAGAAGATGCCTCGTTATACTCAGAAGGATGGTCTTCCTGACCGTACGTCGTCTTTCATACCATATGCTGTGGTTGAAAGTTCCTTTCTCTCAGGGCTTAATCCGTTTGAATGTTTTGCTCATTCGGTGACAAATCGAGATAGCTCTTTCAGTGACAATGCTGAAGTTCCTGGCACTTTGACACGAAAACTTACATTCCTAATGCGGGATATATATACTGCATATGATGGAACAGTGAGGAATGCATATGGAAATCAGCTGGTTCAGTTTTCTTATGACATTGATAGACCTACTAGCATCTCTAATGAATTGGATAGCGAGAACAATAATAGAGATCATGATATAGGTGGTCATCCTGTTGGGTCATTGGCTGCCTGTGCCATGTCAGAAGCTGCATATAGTGCTCTGGACCAACCAATTAGTCTACTTGAAGCTTCCCCATTGCTAAACCTAAAGAGAGTGCTGGAGTGTGGTTCAAAGAGGAATAGTACCAAACAAACATTTTCATTGTTCTTATCAGAGAAACTTTCTAAACGAAGTTATGGATTTGAGTATGGAGCATTAGGAGTTAAGAACCATTTAGAAAGAGTAATGTTTAAAGATATTGTGTCTAATGTCATGATAATCCCTCCCGGAAAAAGCATTTTAGTCCTTGGGTTTGCCACTTTCATGTATGCAAGGGATTGTCCTCTAGCTGATTCACTGAGAGAAGATGGTGATACGGTGTGCTTAACTGTTACAATAGCTGAAAACACAAAAAACTCTTTCCTGCAATTAGATTTCATTCAAGATTTGCTGATTCATTTCCTTCTTGGTACAGTTATAAGAGGCTTTGCTGAGATTGACAGAGTAGACATTGCATGGAATGACCGACCGAAGGTACCAAAACTTCGTTGTAACCATGGTGAGCTCTACTTGCGGGTGACCATGTCTGGAGAAGGAAATTCAAGATTTTGGGCAACTCTTATGAATAATTGCCTCCCTGTAATGGATTTGATTGATTGGTCTCGTAGTCATCCAGATAACACCCATAGTCTCTGTTTGGCATATGGAATAGATTCTGGATGGAAGTACTTTCTCAACAGTTTGGAGTCTGCAACGTTGGATATTGGTAAAACAATACGTCTTGAACATTTGCTGCTTGTTGCAAATTCTCTTTCGGCTACAGGAGAGTTTGTTGGCTTAAATGTGAAAGGATTGTCACATCAAAGGGAACATGCTTTGGTCAAAACACCCTTTATGCAAGCTTGCTTCTCGAGTCCTGGTGCTTGTTTTGTTAAAGCTGCCAAGGCTGGAATTAAGGACAACCTGTCAGGAAGTTTAGATGCCTTGGCATGGGGGAGAATTCCTTCGCTGGGAACCGGGGGACAGTTTGATATCCTATATTCTGGGAGGGGGCATGAGCTTAATAAGCCTGTCGATGTTTATAATCTACTGGGTGGCCAAAGCATTTGTGAGAAGCAGAATGCAAAGATCGAATCCCTTGATAAGAACAATATATCTGAGAAATATAGTGCTCAGTTAGTGCTTAAAAATGGTGGTTCTACCATTAAAGGACTTAAAAAGCTGGATAGTGTATCTAAATCAATTTTAAGGGAATTTTTGACACTGAACGATATTCAGAAGCTGTCGTTTGCATTGAGAACCATTTTACACAAGTACTCTTTAAATGAAAGATTAAATGAAGTGGACAAATCAACTTTGATGATGGCTTTATACTTTCATCCTCATAGGGATGAAAAGATTGGTGTTGGAGCACAGGACATAAAGCCCGCTATGCAATGTTTATTTTCTTTGGGATCAATATCTAAGGTGCGGCTCAGTGGCAGGCTCAAAAAGTATGCAGTTTCACATCCATATGATGAAGATGAACATGTCTTGAGGCAACTGAATGTTGAGTGCCTAAGAGGAGCAAGTGGACACTTGTTCCTTGTCTCCAATCTTGTGAAGAGTCTCAGCTCCAATCCTACCCCACAGTATTCCATTTTGGCTCTCACTAGCTATTTTCTGGATTCTAGCTTCCCTCAGAAGCAGGATCCAGTTGGTCAGCTGATGACACTTGCTGGTGGAGACAAATAA

Coding sequence (CDS)

ATGAGTTCTGCTGGAGACTTTCGGCCAGGCCAGAAGGTGATGATCCATATGGACGATGAACAGGATGGTGAGCTACCAATTCCATCTGGTCTCGTTACTGGCATAAACTTTAGTGTCTCAACTCAGCAAGATACAGAGAATATAGCAGTAATGACAGTTGATGCATCCAGCGAGGTATCTGATCCTAAGTTGGGACTTCCGAATCCATCTTATCAGTGCACCACATGTGGTGCTAGCTCCCTAAAATCTTGTGAAGGACATTTTGGGGTTATCAAATTCCCATATACTATAATCCATCCTTATTTTCTCTCGGAAGTTGCGCAAGTGTTGAATAAAGTTTGTCCAGGGTGTAAATCTATCAGGCAGGAACTATGGGGCAAGTACCCTCCGTCAGAATGTGCCTTACCACTCTCCCCACCCCACCCACTTATCTTACCCCTCCACAACCAGTTTGTCTTCACTCCTTTGGATCCAACTTTAGGTTTAACAAGAGGAGTTATTCACTCGATAAAGGACTCTCCACCTCATGGTGACCTCTTTGAGGTTGACTACGAGGTTGAGGATCCAACATCTGAATATCATCGACCTAAAGGTTGCAGATATTGTTTTGGAAGTCTAAAGGATTGGTATCCGCCTATGAGGTTTAAGCTTTCAACTACTGATATGTTCAAAAAAAGTATGATTATGGTGGAAGTGAAAGAAAATATGTCGAAGAAATATCAAAAGAGGGTGGCTAAAGGAGGCTTGCCTTCAGATTATTGGAATTTTATCCCTAAGGATGAACAACAGGAAGAAAGTTATTGTAGACCAAACAGGAAAATCCTAACGCATGCTCAGGTTCATTATTTGTTGAAAGACATTGACCCAAAGTTTCTCAAAAAGTTTGTGCCTGCAATAGATTCACTGTTTCTAAACTCTTTCCCTGTTACTCCAAACAGTCATCGTGTGACTGAAATGACACATTCATTTTCAAATGGACAGCGATTGATCTTTCTTAGCCCAGAGAAGTTACAGAGTAAAGATTTGGTTTACCAGCAAAAGAAAATTAAGGATACTGCTACTAGCTCATATGGTTTAAGATGGATCAAAGATGTTGTTCTTGGAAAGCGGAGTGACCATTGTTTTCGCATGGTTGTTGTTGGCGATCCAAACATTGAGTTAAGTGAAATTGGCATACCATGTCATGTTGCAGAGAGGTTGCAAATATCTGAACATCTGAGTTCTTGGAATATGAAGAAATTAAGTACTTCTTGTTACCTTCATCTTGTTGAAAAGGGAGAGATCTTTGTTCGTCGTGAAGGTCGTCTAGTTCGTGTACGTAATGTTCTTGAACTTAATATGGGGGACACTATATATAGGCCCCTAGCTGATGGGGATGTTGTGCTGGTTAATCGACCACCATCCATACATCAGCACTCACTTATTGCTTTATCTGTCAAGCTTCTTCCTGTCTCCTCAGTTCTTTCCTTAAACCCACTTTGTTGTTCTCCTTTCCGTGGAGATTTTGATGGTGACTGCCTTCATGGTTATGTTCCTCAATCACTCGAAGCCCGAGTGGAAGTTAGAGAGCTGGTTTCTCTAGATAGACAGCTAATTAATGGCCAAAGTGGTAGAAATCTGCTGTCACTTAGTCATGATAGTTTAACTGCTGCTCATTTAATTATGGAAGATGGAGTTCCGTTAAATCTTTTCCAGATGCAGCAGTTGCAAATGCTCGCTTTACATCAGTTGTTGCCCCCAGCAATTTTAAAAGCTCCTTTGCTTAGAAATTGCGCTTGGACTGGTAAACAGTTATTCAGCACCCTCCTACCTCCTGATTTTGATTATTCTTCTCCTTCTCACTGTGTCCTTATTGAAAATGGAGAATTAATATCTTCGGAAGGATCTTACTGGCTCCGCGATAGTGGCAGAAACCTCTTCCAAGCGCTAATAGAACACTGTGAAGGCAAGACCCTTGACTACTTGCACGATGCTCAAGGGGTTCTTTGTGAATGGTTATCAATGAGGGGCTTGAGTGTTTCATTGTCAGACTTGTACCTATCCGTGGATTCATACTCTCACAAAAACATGATGGATGATATCTTTTGTGGGTTACAGGAAGCTGAGGAAACATGTAATTTAAAGCAGCTGATGGTGGATGCACATAAAGATATCCTTACTGAAGATGACGAAGATAATCAACACGTGTTGTCTATTGCTGTGGATCGTTTAAGTTATGAGAAGCAGAAATCTGCTGCTCTAAATCAAGCTTCTGTTGATGCTTTCAAGAAAGTTTTTCGTGATATACAAAATCTAGTTTACAAGTATTCTGGTAAAGACAATTCACTTCTTACCATGTTCAAGGCTGGAAGCAAGGGTAATTTGCTAAAACTAGTTCAGCATAGCATGTGTCTTGGCTTGCAACACTCTTTGGTTACTCTATCCTTTAGCCTTCCACATAAGCTTACGTGTTCTGCATGGAACAGCCAGAAGATGCCTCGTTATACTCAGAAGGATGGTCTTCCTGACCGTACGTCGTCTTTCATACCATATGCTGTGGTTGAAAGTTCCTTTCTCTCAGGGCTTAATCCGTTTGAATGTTTTGCTCATTCGGTGACAAATCGAGATAGCTCTTTCAGTGACAATGCTGAAGTTCCTGGCACTTTGACACGAAAACTTACATTCCTAATGCGGGATATATATACTGCATATGATGGAACAGTGAGGAATGCATATGGAAATCAGCTGGTTCAGTTTTCTTATGACATTGATAGACCTACTAGCATCTCTAATGAATTGGATAGCGAGAACAATAATAGAGATCATGATATAGGTGGTCATCCTGTTGGGTCATTGGCTGCCTGTGCCATGTCAGAAGCTGCATATAGTGCTCTGGACCAACCAATTAGTCTACTTGAAGCTTCCCCATTGCTAAACCTAAAGAGAGTGCTGGAGTGTGGTTCAAAGAGGAATAGTACCAAACAAACATTTTCATTGTTCTTATCAGAGAAACTTTCTAAACGAAGTTATGGATTTGAGTATGGAGCATTAGGAGTTAAGAACCATTTAGAAAGAGTAATGTTTAAAGATATTGTGTCTAATGTCATGATAATCCCTCCCGGAAAAAGCATTTTAGTCCTTGGGTTTGCCACTTTCATGTATGCAAGGGATTGTCCTCTAGCTGATTCACTGAGAGAAGATGGTGATACGGTGTGCTTAACTGTTACAATAGCTGAAAACACAAAAAACTCTTTCCTGCAATTAGATTTCATTCAAGATTTGCTGATTCATTTCCTTCTTGGTACAGTTATAAGAGGCTTTGCTGAGATTGACAGAGTAGACATTGCATGGAATGACCGACCGAAGGTACCAAAACTTCGTTGTAACCATGGTGAGCTCTACTTGCGGGTGACCATGTCTGGAGAAGGAAATTCAAGATTTTGGGCAACTCTTATGAATAATTGCCTCCCTGTAATGGATTTGATTGATTGGTCTCGTAGTCATCCAGATAACACCCATAGTCTCTGTTTGGCATATGGAATAGATTCTGGATGGAAGTACTTTCTCAACAGTTTGGAGTCTGCAACGTTGGATATTGGTAAAACAATACGTCTTGAACATTTGCTGCTTGTTGCAAATTCTCTTTCGGCTACAGGAGAGTTTGTTGGCTTAAATGTGAAAGGATTGTCACATCAAAGGGAACATGCTTTGGTCAAAACACCCTTTATGCAAGCTTGCTTCTCGAGTCCTGGTGCTTGTTTTGTTAAAGCTGCCAAGGCTGGAATTAAGGACAACCTGTCAGGAAGTTTAGATGCCTTGGCATGGGGGAGAATTCCTTCGCTGGGAACCGGGGGACAGTTTGATATCCTATATTCTGGGAGGGGGCATGAGCTTAATAAGCCTGTCGATGTTTATAATCTACTGGGTGGCCAAAGCATTTGTGAGAAGCAGAATGCAAAGATCGAATCCCTTGATAAGAACAATATATCTGAGAAATATAGTGCTCAGTTAGTGCTTAAAAATGGTGGTTCTACCATTAAAGGACTTAAAAAGCTGGATAGTGTATCTAAATCAATTTTAAGGGAATTTTTGACACTGAACGATATTCAGAAGCTGTCGTTTGCATTGAGAACCATTTTACACAAGTACTCTTTAAATGAAAGATTAAATGAAGTGGACAAATCAACTTTGATGATGGCTTTATACTTTCATCCTCATAGGGATGAAAAGATTGGTGTTGGAGCACAGGACATAAAGCCCGCTATGCAATGTTTATTTTCTTTGGGATCAATATCTAAGGTGCGGCTCAGTGGCAGGCTCAAAAAGTATGCAGTTTCACATCCATATGATGAAGATGAACATGTCTTGAGGCAACTGAATGTTGAGTGCCTAAGAGGAGCAAGTGGACACTTGTTCCTTGTCTCCAATCTTGTGAAGAGTCTCAGCTCCAATCCTACCCCACAGTATTCCATTTTGGCTCTCACTAGCTATTTTCTGGATTCTAGCTTCCCTCAGAAGCAGGATCCAGTTGGTCAGCTGATGACACTTGCTGGTGGAGACAAATAA

Protein sequence

MSSAGDFRPGQKVMIHMDDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASSEVSDPKLGLPNPSYQCTTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKYPPSECALPLSPPHPLILPLHNQFVFTPLDPTLGLTRGVIHSIKDSPPHGDLFEVDYEVEDPTSEYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLPSDYWNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTPNSHRVTEMTHSFSNGQRLIFLSPEKLQSKDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIFVRREGRLVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVPLNLFQMQQLQMLALHQLLPPAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVLIENGELISSEGSYWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQEAEETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQKSAALNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFSLPHKLTCSAWNSQKMPRYTQKDGLPDRTSSFIPYAVVESSFLSGLNPFECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSISNELDSENNNRDHDIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSNVMIIPPGKSILVLGFATFMYARDCPLADSLREDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKLRCNHGELYLRVTMSGEGNSRFWATLMNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPGACFVKAAKAGIKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQSICEKQNAKIESLDKNNISEKYSAQLVLKNGGSTIKGLKKLDSVSKSILREFLTLNDIQKLSFALRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKPAMQCLFSLGSISKVRLSGRLKKYAVSHPYDEDEHVLRQLNVECLRGASGHLFLVSNLVKSLSSNPTPQYSILALTSYFLDSSFPQKQDPVGQLMTLAGGDK

Homology

[Close]

BLAST of CmUC10G185960 vs. NCBI nr
Match: XP_038905038.1 (DNA-directed RNA polymerase IV subunit 1 isoform X1 [Benincasa hispida] >XP_038905039.1 DNA-directed RNA polymerase IV subunit 1 isoform X1 [Benincasa hispida] >XP_038905040.1 DNA-directed RNA polymerase IV subunit 1 isoform X1 [Benincasa hispida] >XP_038905041.1 DNA-directed RNA polymerase IV subunit 1 isoform X1 [Benincasa hispida])

HSP 1 Score: 2538.8 bits (6579), Expect = 0.0e+00
Identity = 1287/1488 (86.49%), Postives = 1317/1488 (88.51%), Query Frame = 0


Query: 1    MSSAGDFRPGQKVMIHMDDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASSEVS 60
            MS AGDF+P QKVMIHM+DEQDGELPIPSGL+TGINFSV+TQQDTENIAV+TVDA+SEVS
Sbjct: 1    MSFAGDFQPEQKVMIHMEDEQDGELPIPSGLLTGINFSVATQQDTENIAVLTVDAASEVS 60

Query: 61   DPKLGLPNPSYQCTTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSI 120
            DPKLGLPNPSYQCTTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSI
Sbjct: 61   DPKLGLPNPSYQCTTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSI 120

Query: 121  RQELWGKYPPSECALPLSPPHPLILPLHNQFVFTPLDPTLGLTRGVIHSIKDSPPHGDLF 180
            RQELWGK                                                     
Sbjct: 121  RQELWGK----------------------------------------------------- 180

Query: 181  EVDYEVEDPTSEYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKY 240
                 VEDPTS+YHRPKGCRYCFGSLKDWYPPMRFKLSTTDMF+KSMIMVEVKENMSKKY
Sbjct: 181  -----VEDPTSDYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFRKSMIMVEVKENMSKKY 240

Query: 241  QKRVAKGGLPSDYWNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAID 300
            QK+VAKGGLPSDYWNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPA D
Sbjct: 241  QKKVAKGGLPSDYWNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPATD 300

Query: 301  SLFLNSFPVTPNSHRVTEMTHSFSNGQRLIF----------------------------- 360
            SLFLNSFPVTPNSHRVTE+THSFSNGQRLIF                             
Sbjct: 301  SLFLNSFPVTPNSHRVTELTHSFSNGQRLIFDERTRAYKKVVDFRGTANELGSRILDCLK 360

Query: 361  ---LSPEKLQSKDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELS 420
               LSPEKLQSKDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELS
Sbjct: 361  ISKLSPEKLQSKDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELS 420

Query: 421  EIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIFVRREGRLVRVRNVLELNMG 480
            EIGIPCHVAERLQISEHLSSWNMKKLSTSCYL+LV KGEIFVRREGRLVRVRNVLELNMG
Sbjct: 421  EIGIPCHVAERLQISEHLSSWNMKKLSTSCYLNLVVKGEIFVRREGRLVRVRNVLELNMG 480

Query: 481  DTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLH 540
            DTIYRPLADGDVVLVNRPPSIHQHSLIAL VKLLPVSSVLSLNPLCCSPFRGDFDGDCLH
Sbjct: 481  DTIYRPLADGDVVLVNRPPSIHQHSLIALYVKLLPVSSVLSLNPLCCSPFRGDFDGDCLH 540

Query: 541  GYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVPLNLFQMQQ 600
            GYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGV LN FQMQQ
Sbjct: 541  GYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNAFQMQQ 600

Query: 601  LQMLALHQLLPPAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVLIENGELISSEG 660
            LQMLALHQLLPPAI+KAPL RNCAWTGKQLFS LLPPDFDYSSPSH V I+NGELISSEG
Sbjct: 601  LQMLALHQLLPPAIVKAPLFRNCAWTGKQLFSILLPPDFDYSSPSHNVFIKNGELISSEG 660

Query: 661  SYWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHK 720
            SYWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDS+SHK
Sbjct: 661  SYWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSHSHK 720

Query: 721  NMMDDIFCGLQEAEETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQKSAALN 780
            NMMDDIFCGLQEAEETCNLKQLMVD+HKDILT +DEDNQH+LSI ++RL YEKQKS ALN
Sbjct: 721  NMMDDIFCGLQEAEETCNLKQLMVDSHKDILTGNDEDNQHMLSIEMERLIYEKQKSVALN 780

Query: 781  QASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLS 840
            QASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLV LS
Sbjct: 781  QASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVFLS 840

Query: 841  FSLPHKLTCSAWNSQKMPRYTQKDGLPDRTSSFIPYAVVESSFLSGLNPFECFAHSVTNR 900
            FSLPHKL+CSAWNSQKMPRY QKDGLPDRT SFIPYAVVE+SFLSGLNPFECFAHSVTNR
Sbjct: 841  FSLPHKLSCSAWNSQKMPRYIQKDGLPDRTQSFIPYAVVENSFLSGLNPFECFAHSVTNR 900

Query: 901  DSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSISNELDS 960
            DSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTS+SNELDS
Sbjct: 901  DSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSVSNELDS 960

Query: 961  ENNNRDHDIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQ 1020
            ENNN+D DIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQ
Sbjct: 961  ENNNKDRDIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQ 1020

Query: 1021 TFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSNVMII----PPGKSILVLGFAT 1080
            TFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVS VMII    P  K         
Sbjct: 1021 TFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSTVMIIFSPQPSRKKHFSPWVCH 1080

Query: 1081 F----------------------------------------MYARDCPLADSLREDGDTV 1140
            F                                        + ++DCPLADS+REDGDTV
Sbjct: 1081 FHVCKEILKKRRLKMNSVIHSLNIRCDSVRQEGRMNLPSLQIISQDCPLADSVREDGDTV 1140

Query: 1141 CLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKLRCNHG 1200
            CLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPK RCNHG
Sbjct: 1141 CLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKPRCNHG 1200

Query: 1201 ELYLRVTMSGEGNSRFWATLMNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNS 1260
            ELYLRVTMSGEGNSRFWATL+NNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNS
Sbjct: 1201 ELYLRVTMSGEGNSRFWATLVNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNS 1260

Query: 1261 LESATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPG 1320
            L SATLDIGKTIRLEHLLL+ANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPG
Sbjct: 1261 LVSATLDIGKTIRLEHLLLIANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPG 1320

Query: 1321 ACFVKAAKAGIKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQ 1380
            ACFVKAAKAG KDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQ
Sbjct: 1321 ACFVKAAKAGSKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQ 1380

Query: 1381 SICEKQNAKIESLDKNNISEKYSAQLVLKNGGSTIKGLKKLDSVSKSILREFLTLNDIQK 1413
            S CEKQNAKI SLDKNNISEKYSAQLVLKNGGSTIKGLKKLD+VSKSILREFLTLNDIQK
Sbjct: 1381 STCEKQNAKIGSLDKNNISEKYSAQLVLKNGGSTIKGLKKLDNVSKSILREFLTLNDIQK 1430

[Close]

BLAST of CmUC10G185960 vs. NCBI nr
Match: XP_038905045.1 (DNA-directed RNA polymerase IV subunit 1 isoform X4 [Benincasa hispida])

HSP 1 Score: 2538.8 bits (6579), Expect = 0.0e+00
Identity = 1287/1488 (86.49%), Postives = 1317/1488 (88.51%), Query Frame = 0


Query: 1    MSSAGDFRPGQKVMIHMDDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASSEVS 60
            MS AGDF+P QKVMIHM+DEQDGELPIPSGL+TGINFSV+TQQDTENIAV+TVDA+SEVS
Sbjct: 1    MSFAGDFQPEQKVMIHMEDEQDGELPIPSGLLTGINFSVATQQDTENIAVLTVDAASEVS 60

Query: 61   DPKLGLPNPSYQCTTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSI 120
            DPKLGLPNPSYQCTTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSI
Sbjct: 61   DPKLGLPNPSYQCTTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSI 120

Query: 121  RQELWGKYPPSECALPLSPPHPLILPLHNQFVFTPLDPTLGLTRGVIHSIKDSPPHGDLF 180
            RQELWGK                                                     
Sbjct: 121  RQELWGK----------------------------------------------------- 180

Query: 181  EVDYEVEDPTSEYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKY 240
                 VEDPTS+YHRPKGCRYCFGSLKDWYPPMRFKLSTTDMF+KSMIMVEVKENMSKKY
Sbjct: 181  -----VEDPTSDYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFRKSMIMVEVKENMSKKY 240

Query: 241  QKRVAKGGLPSDYWNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAID 300
            QK+VAKGGLPSDYWNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPA D
Sbjct: 241  QKKVAKGGLPSDYWNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPATD 300

Query: 301  SLFLNSFPVTPNSHRVTEMTHSFSNGQRLIF----------------------------- 360
            SLFLNSFPVTPNSHRVTE+THSFSNGQRLIF                             
Sbjct: 301  SLFLNSFPVTPNSHRVTELTHSFSNGQRLIFDERTRAYKKVVDFRGTANELGSRILDCLK 360

Query: 361  ---LSPEKLQSKDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELS 420
               LSPEKLQSKDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELS
Sbjct: 361  ISKLSPEKLQSKDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELS 420

Query: 421  EIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIFVRREGRLVRVRNVLELNMG 480
            EIGIPCHVAERLQISEHLSSWNMKKLSTSCYL+LV KGEIFVRREGRLVRVRNVLELNMG
Sbjct: 421  EIGIPCHVAERLQISEHLSSWNMKKLSTSCYLNLVVKGEIFVRREGRLVRVRNVLELNMG 480

Query: 481  DTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLH 540
            DTIYRPLADGDVVLVNRPPSIHQHSLIAL VKLLPVSSVLSLNPLCCSPFRGDFDGDCLH
Sbjct: 481  DTIYRPLADGDVVLVNRPPSIHQHSLIALYVKLLPVSSVLSLNPLCCSPFRGDFDGDCLH 540

Query: 541  GYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVPLNLFQMQQ 600
            GYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGV LN FQMQQ
Sbjct: 541  GYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNAFQMQQ 600

Query: 601  LQMLALHQLLPPAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVLIENGELISSEG 660
            LQMLALHQLLPPAI+KAPL RNCAWTGKQLFS LLPPDFDYSSPSH V I+NGELISSEG
Sbjct: 601  LQMLALHQLLPPAIVKAPLFRNCAWTGKQLFSILLPPDFDYSSPSHNVFIKNGELISSEG 660

Query: 661  SYWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHK 720
            SYWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDS+SHK
Sbjct: 661  SYWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSHSHK 720

Query: 721  NMMDDIFCGLQEAEETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQKSAALN 780
            NMMDDIFCGLQEAEETCNLKQLMVD+HKDILT +DEDNQH+LSI ++RL YEKQKS ALN
Sbjct: 721  NMMDDIFCGLQEAEETCNLKQLMVDSHKDILTGNDEDNQHMLSIEMERLIYEKQKSVALN 780

Query: 781  QASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLS 840
            QASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLV LS
Sbjct: 781  QASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVFLS 840

Query: 841  FSLPHKLTCSAWNSQKMPRYTQKDGLPDRTSSFIPYAVVESSFLSGLNPFECFAHSVTNR 900
            FSLPHKL+CSAWNSQKMPRY QKDGLPDRT SFIPYAVVE+SFLSGLNPFECFAHSVTNR
Sbjct: 841  FSLPHKLSCSAWNSQKMPRYIQKDGLPDRTQSFIPYAVVENSFLSGLNPFECFAHSVTNR 900

Query: 901  DSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSISNELDS 960
            DSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTS+SNELDS
Sbjct: 901  DSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSVSNELDS 960

Query: 961  ENNNRDHDIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQ 1020
            ENNN+D DIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQ
Sbjct: 961  ENNNKDRDIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQ 1020

Query: 1021 TFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSNVMII----PPGKSILVLGFAT 1080
            TFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVS VMII    P  K         
Sbjct: 1021 TFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSTVMIIFSPQPSRKKHFSPWVCH 1080

Query: 1081 F----------------------------------------MYARDCPLADSLREDGDTV 1140
            F                                        + ++DCPLADS+REDGDTV
Sbjct: 1081 FHVCKEILKKRRLKMNSVIHSLNIRCDSVRQEGRMNLPSLQIISQDCPLADSVREDGDTV 1140

Query: 1141 CLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKLRCNHG 1200
            CLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPK RCNHG
Sbjct: 1141 CLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKPRCNHG 1200

Query: 1201 ELYLRVTMSGEGNSRFWATLMNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNS 1260
            ELYLRVTMSGEGNSRFWATL+NNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNS
Sbjct: 1201 ELYLRVTMSGEGNSRFWATLVNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNS 1260

Query: 1261 LESATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPG 1320
            L SATLDIGKTIRLEHLLL+ANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPG
Sbjct: 1261 LVSATLDIGKTIRLEHLLLIANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPG 1320

Query: 1321 ACFVKAAKAGIKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQ 1380
            ACFVKAAKAG KDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQ
Sbjct: 1321 ACFVKAAKAGSKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQ 1380

Query: 1381 SICEKQNAKIESLDKNNISEKYSAQLVLKNGGSTIKGLKKLDSVSKSILREFLTLNDIQK 1413
            S CEKQNAKI SLDKNNISEKYSAQLVLKNGGSTIKGLKKLD+VSKSILREFLTLNDIQK
Sbjct: 1381 STCEKQNAKIGSLDKNNISEKYSAQLVLKNGGSTIKGLKKLDNVSKSILREFLTLNDIQK 1430

[Close]

BLAST of CmUC10G185960 vs. NCBI nr
Match: XP_038905042.1 (DNA-directed RNA polymerase IV subunit 1 isoform X2 [Benincasa hispida])

HSP 1 Score: 2519.6 bits (6529), Expect = 0.0e+00
Identity = 1277/1475 (86.58%), Postives = 1306/1475 (88.54%), Query Frame = 0


Query: 14   MIHMDDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASSEVSDPKLGLPNPSYQC 73
            MIHM+DEQDGELPIPSGL+TGINFSV+TQQDTENIAV+TVDA+SEVSDPKLGLPNPSYQC
Sbjct: 1    MIHMEDEQDGELPIPSGLLTGINFSVATQQDTENIAVLTVDAASEVSDPKLGLPNPSYQC 60

Query: 74   TTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKYPPSEC 133
            TTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGK      
Sbjct: 61   TTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGK------ 120

Query: 134  ALPLSPPHPLILPLHNQFVFTPLDPTLGLTRGVIHSIKDSPPHGDLFEVDYEVEDPTSEY 193
                                                                VEDPTS+Y
Sbjct: 121  ----------------------------------------------------VEDPTSDY 180

Query: 194  HRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLPSDY 253
            HRPKGCRYCFGSLKDWYPPMRFKLSTTDMF+KSMIMVEVKENMSKKYQK+VAKGGLPSDY
Sbjct: 181  HRPKGCRYCFGSLKDWYPPMRFKLSTTDMFRKSMIMVEVKENMSKKYQKKVAKGGLPSDY 240

Query: 254  WNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTPNS 313
            WNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPA DSLFLNSFPVTPNS
Sbjct: 241  WNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPATDSLFLNSFPVTPNS 300

Query: 314  HRVTEMTHSFSNGQRLIF--------------------------------LSPEKLQSKD 373
            HRVTE+THSFSNGQRLIF                                LSPEKLQSKD
Sbjct: 301  HRVTELTHSFSNGQRLIFDERTRAYKKVVDFRGTANELGSRILDCLKISKLSPEKLQSKD 360

Query: 374  LVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQ 433
            LVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQ
Sbjct: 361  LVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQ 420

Query: 434  ISEHLSSWNMKKLSTSCYLHLVEKGEIFVRREGRLVRVRNVLELNMGDTIYRPLADGDVV 493
            ISEHLSSWNMKKLSTSCYL+LV KGEIFVRREGRLVRVRNVLELNMGDTIYRPLADGDVV
Sbjct: 421  ISEHLSSWNMKKLSTSCYLNLVVKGEIFVRREGRLVRVRNVLELNMGDTIYRPLADGDVV 480

Query: 494  LVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEV 553
            LVNRPPSIHQHSLIAL VKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEV
Sbjct: 481  LVNRPPSIHQHSLIALYVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEV 540

Query: 554  RELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVPLNLFQMQQLQMLALHQLLPPA 613
            RELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGV LN FQMQQLQMLALHQLLPPA
Sbjct: 541  RELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNAFQMQQLQMLALHQLLPPA 600

Query: 614  ILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVLIENGELISSEGSYWLRDSGRNLFQ 673
            I+KAPL RNCAWTGKQLFS LLPPDFDYSSPSH V I+NGELISSEGSYWLRDSGRNLFQ
Sbjct: 601  IVKAPLFRNCAWTGKQLFSILLPPDFDYSSPSHNVFIKNGELISSEGSYWLRDSGRNLFQ 660

Query: 674  ALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQEA 733
            ALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDS+SHKNMMDDIFCGLQEA
Sbjct: 661  ALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSHSHKNMMDDIFCGLQEA 720

Query: 734  EETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQKSAALNQASVDAFKKVFRD 793
            EETCNLKQLMVD+HKDILT +DEDNQH+LSI ++RL YEKQKS ALNQASVDAFKKVFRD
Sbjct: 721  EETCNLKQLMVDSHKDILTGNDEDNQHMLSIEMERLIYEKQKSVALNQASVDAFKKVFRD 780

Query: 794  IQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFSLPHKLTCSAWN 853
            IQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLV LSFSLPHKL+CSAWN
Sbjct: 781  IQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVFLSFSLPHKLSCSAWN 840

Query: 854  SQKMPRYTQKDGLPDRTSSFIPYAVVESSFLSGLNPFECFAHSVTNRDSSFSDNAEVPGT 913
            SQKMPRY QKDGLPDRT SFIPYAVVE+SFLSGLNPFECFAHSVTNRDSSFSDNAEVPGT
Sbjct: 841  SQKMPRYIQKDGLPDRTQSFIPYAVVENSFLSGLNPFECFAHSVTNRDSSFSDNAEVPGT 900

Query: 914  LTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSISNELDSENNNRDHDIGGHP 973
            LTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTS+SNELDSENNN+D DIGGHP
Sbjct: 901  LTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSVSNELDSENNNKDRDIGGHP 960

Query: 974  VGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLSKR 1033
            VGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLSKR
Sbjct: 961  VGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLSKR 1020

Query: 1034 SYGFEYGALGVKNHLERVMFKDIVSNVMII----PPGKSILVLGFATF------------ 1093
            SYGFEYGALGVKNHLERVMFKDIVS VMII    P  K         F            
Sbjct: 1021 SYGFEYGALGVKNHLERVMFKDIVSTVMIIFSPQPSRKKHFSPWVCHFHVCKEILKKRRL 1080

Query: 1094 ----------------------------MYARDCPLADSLREDGDTVCLTVTIAENTKNS 1153
                                        + ++DCPLADS+REDGDTVCLTVTIAENTKNS
Sbjct: 1081 KMNSVIHSLNIRCDSVRQEGRMNLPSLQIISQDCPLADSVREDGDTVCLTVTIAENTKNS 1140

Query: 1154 FLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKLRCNHGELYLRVTMSGEGN 1213
            FLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPK RCNHGELYLRVTMSGEGN
Sbjct: 1141 FLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKPRCNHGELYLRVTMSGEGN 1200

Query: 1214 SRFWATLMNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDIGKTIR 1273
            SRFWATL+NNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSL SATLDIGKTIR
Sbjct: 1201 SRFWATLVNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLVSATLDIGKTIR 1260

Query: 1274 LEHLLLVANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPGACFVKAAKAGIKD 1333
            LEHLLL+ANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPGACFVKAAKAG KD
Sbjct: 1261 LEHLLLIANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPGACFVKAAKAGSKD 1320

Query: 1334 NLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQSICEKQNAKIESL 1393
            NLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQS CEKQNAKI SL
Sbjct: 1321 NLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQSTCEKQNAKIGSL 1380

Query: 1394 DKNNISEKYSAQLVLKNGGSTIKGLKKLDSVSKSILREFLTLNDIQKLSFALRTILHKYS 1413
            DKNNISEKYSAQLVLKNGGSTIKGLKKLD+VSKSILREFLTLNDIQKLSFALRTILHKYS
Sbjct: 1381 DKNNISEKYSAQLVLKNGGSTIKGLKKLDNVSKSILREFLTLNDIQKLSFALRTILHKYS 1417

[Close]

BLAST of CmUC10G185960 vs. NCBI nr
Match: TYK19428.1 (DNA-directed RNA polymerase IV subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 2515.0 bits (6517), Expect = 0.0e+00
Identity = 1277/1494 (85.48%), Postives = 1319/1494 (88.29%), Query Frame = 0


Query: 1    MSSAGDFRPGQKVMIHMDDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASSEVS 60
            MSSA DFRPGQKVMIHM+DEQDGELPIPSG +TGINFSVS QQD ENIAV+TVDA+SEVS
Sbjct: 1    MSSAEDFRPGQKVMIHMEDEQDGELPIPSGRLTGINFSVSNQQDIENIAVITVDAASEVS 60

Query: 61   DPKLGLPNPSYQCTTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSI 120
            DPKLGLPNPSYQCTTCGASSLK CEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSI
Sbjct: 61   DPKLGLPNPSYQCTTCGASSLKFCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSI 120

Query: 121  RQELWGKYPPSECALPLSPPHPLILPLHNQFVFTPLDPTLGLTRGVIHSIKDSPPHGDLF 180
            RQELWGK       L                                   ++S P    F
Sbjct: 121  RQELWGKVRKKMMTL---------------------------------CHRNSSP----F 180

Query: 181  EVDYEVEDPTSEYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKY 240
            E+   VEDPTS+Y+RPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKY
Sbjct: 181  EIFIWVEDPTSDYNRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKY 240

Query: 241  QKRVAKGGLPSDYWNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAID 300
            QKRVAKGGLPSDYW+FIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAID
Sbjct: 241  QKRVAKGGLPSDYWDFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAID 300

Query: 301  SLFLNSFPVTPNSHRVTEMTHSFSNGQRL------------------------------- 360
            SLFLNSFPVTPNSHRVTEM HSFSNGQRL                               
Sbjct: 301  SLFLNSFPVTPNSHRVTEMAHSFSNGQRLIFDERTRAYKKVVDFRGTANELGSRVLDCLK 360

Query: 361  -------IFLSPEKLQSKDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGD 420
                   IFLSPEKLQSKDLVYQQKKIKDTATSS GLRWIKDVVLGKRSDHCFRMVVVGD
Sbjct: 361  ISKAIYKIFLSPEKLQSKDLVYQQKKIKDTATSSSGLRWIKDVVLGKRSDHCFRMVVVGD 420

Query: 421  PNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIFVRREGRLVRVRNV 480
            PNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEI+VRREGRLVRVRNV
Sbjct: 421  PNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRREGRLVRVRNV 480

Query: 481  LELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDF 540
            LELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVS+VLSLNPLCCSPFRGDF
Sbjct: 481  LELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSAVLSLNPLCCSPFRGDF 540

Query: 541  DGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVPLN 600
            DGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLI+EDGV LN
Sbjct: 541  DGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLILEDGVSLN 600

Query: 601  LFQMQQLQMLALHQLLPPAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVLIENGE 660
            LFQMQQLQML LHQLLPPAI+K+PLLRNCAWTGKQLFS LLPPDF+YSSPSH V IE GE
Sbjct: 601  LFQMQQLQMLTLHQLLPPAIVKSPLLRNCAWTGKQLFSILLPPDFEYSSPSHNVFIEKGE 660

Query: 661  LISSEGSYWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSV 720
            LISSEGSYWLRDSGRNLFQALIEHCEGKTLDYL DAQGVLCEWLSMRGLSVSLSDLYLSV
Sbjct: 661  LISSEGSYWLRDSGRNLFQALIEHCEGKTLDYLRDAQGVLCEWLSMRGLSVSLSDLYLSV 720

Query: 721  DSYSHKNMMDDIFCGLQEAEETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQ 780
            DSYSHKNMMDDIFCGLQEAEETCNLKQLMVD+HK+ILT +DEDNQH+LSIAV+ L YEKQ
Sbjct: 721  DSYSHKNMMDDIFCGLQEAEETCNLKQLMVDSHKEILTGNDEDNQHLLSIAVEHLIYEKQ 780

Query: 781  KSAALNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQH 840
            KSAALNQASVDAFKKVFRDIQNLV+KYSGKDNSLLTMFKAGSKGNL+KLVQHSMCLGLQH
Sbjct: 781  KSAALNQASVDAFKKVFRDIQNLVHKYSGKDNSLLTMFKAGSKGNLMKLVQHSMCLGLQH 840

Query: 841  SLVTLSFSLPHKLTCSAWNSQKMPRYTQKDGLPDRTSSFIPYAVVESSFLSGLNPFECFA 900
            SLVTLSFSLPHKL+CSAWNSQKMPRY Q+DGLPDRT SFIPYAVVE+SFLSGLNPFECFA
Sbjct: 841  SLVTLSFSLPHKLSCSAWNSQKMPRYIQEDGLPDRTQSFIPYAVVENSFLSGLNPFECFA 900

Query: 901  HSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSI 960
            HSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQF YDIDRPTS+
Sbjct: 901  HSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFCYDIDRPTSV 960

Query: 961  SNELDSENNNRDHDIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSK 1020
            S+E DSE NNRD DIGGHPVGSLAACA SEAAYSALDQPISLLEASPLLNLKRVLECGSK
Sbjct: 961  SSESDSE-NNRDRDIGGHPVGSLAACAFSEAAYSALDQPISLLEASPLLNLKRVLECGSK 1020

Query: 1021 RNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSNVMII----PPGKSIL 1080
            RNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVS+VMII    P  K   
Sbjct: 1021 RNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSSVMIIFSPQPSRKKHF 1080

Query: 1081 VLGFATF----------------------------------------MYARDCPLADSLR 1140
                  F                                        +  +DCPLADSL 
Sbjct: 1081 SPWVCHFHVCKDILKKRRLKMNSVIHSLNMRCDSVRQEGRMNLPSLQIITQDCPLADSLT 1140

Query: 1141 EDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPK 1200
            EDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDI WNDRPKVPK
Sbjct: 1141 EDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDITWNDRPKVPK 1200

Query: 1201 LRCNHGELYLRVTMSGEGNSRFWATLMNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGW 1260
             RC+HGELYLRVTMSGEGNSRFWATL+NNCLP+MDLIDW+RSHPDNTHSLCLAYGIDSGW
Sbjct: 1201 PRCSHGELYLRVTMSGEGNSRFWATLINNCLPIMDLIDWTRSHPDNTHSLCLAYGIDSGW 1260

Query: 1261 KYFLNSLESATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGLSHQREHALVKTPFMQA 1320
            KYFLNSLE ATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGL+HQREHALVKTPFMQA
Sbjct: 1261 KYFLNSLECATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGLTHQREHALVKTPFMQA 1320

Query: 1321 CFSSPGACFVKAAKAGIKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVY 1380
            CFSSPGAC +KAAKAGIKDNLSGSLDALAWGR+PSLGTGGQFDILYSG+GHELNKPVDVY
Sbjct: 1321 CFSSPGACLIKAAKAGIKDNLSGSLDALAWGRMPSLGTGGQFDILYSGKGHELNKPVDVY 1380

Query: 1381 NLLGGQSICEKQNAKIESLDKNNISEKYSAQLVLKNGGSTIKGLKKLDSVSKSILREFLT 1413
            NLLGGQS CEKQNAKIES+DKNNISEKYSAQLVLKNGGSTIKGLK+LDSVSKSILR+FLT
Sbjct: 1381 NLLGGQSTCEKQNAKIESVDKNNISEKYSAQLVLKNGGSTIKGLKRLDSVSKSILRKFLT 1440

[Close]

BLAST of CmUC10G185960 vs. NCBI nr
Match: XP_011650447.1 (DNA-directed RNA polymerase IV subunit 1 isoform X1 [Cucumis sativus] >XP_011650449.1 DNA-directed RNA polymerase IV subunit 1 isoform X1 [Cucumis sativus] >KGN55963.1 hypothetical protein Csa_010842 [Cucumis sativus])

HSP 1 Score: 2493.8 bits (6462), Expect = 0.0e+00
Identity = 1261/1488 (84.74%), Postives = 1305/1488 (87.70%), Query Frame = 0


Query: 1    MSSAGDFRPGQKVMIHMDDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASSEVS 60
            MSS  DFRPGQKVMIHM+DEQDGELPIPSGL+TGINFSVS QQD ENIAV+TVDA++EVS
Sbjct: 1    MSSVEDFRPGQKVMIHMEDEQDGELPIPSGLLTGINFSVSNQQDIENIAVITVDAANEVS 60

Query: 61   DPKLGLPNPSYQCTTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSI 120
            DPKLGLPNPSYQCTTCGASSLK CEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKS+
Sbjct: 61   DPKLGLPNPSYQCTTCGASSLKFCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSV 120

Query: 121  RQELWGKYPPSECALPLSPPHPLILPLHNQFVFTPLDPTLGLTRGVIHSIKDSPPHGDLF 180
            RQELWGK                                                     
Sbjct: 121  RQELWGK----------------------------------------------------- 180

Query: 181  EVDYEVEDPTSEYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKY 240
                 VEDPTS+Y+RPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKY
Sbjct: 181  -----VEDPTSDYNRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKY 240

Query: 241  QKRVAKGGLPSDYWNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAID 300
            QKRVAKGGLPSDYW+FIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAID
Sbjct: 241  QKRVAKGGLPSDYWDFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAID 300

Query: 301  SLFLNSFPVTPNSHRVTEMTHSFSNGQRLIF----------------------------- 360
            SLFLNSFPVTPNSHRVTEM HSFSNGQRLIF                             
Sbjct: 301  SLFLNSFPVTPNSHRVTEMAHSFSNGQRLIFDERTRAYKKVVDFRGTANELGSRVLDCLK 360

Query: 361  ---LSPEKLQSKDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELS 420
               LSPEKLQ+KDLVYQQKKIKDTATSS GLRWIKDVVLGKRSDHCFRMVVVGDPNIELS
Sbjct: 361  ISKLSPEKLQNKDLVYQQKKIKDTATSSSGLRWIKDVVLGKRSDHCFRMVVVGDPNIELS 420

Query: 421  EIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIFVRREGRLVRVRNVLELNMG 480
            EIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEI+VRREGRLVRVRNVLELNMG
Sbjct: 421  EIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNMG 480

Query: 481  DTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLH 540
            DTIYRPLADGD+VLVNRPPSIHQHSLIALSVKLLPVS+VLSLNPLCCSPFRGDFDGDCLH
Sbjct: 481  DTIYRPLADGDIVLVNRPPSIHQHSLIALSVKLLPVSAVLSLNPLCCSPFRGDFDGDCLH 540

Query: 541  GYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVPLNLFQMQQ 600
            GYVPQSLEARVEVRELVSLD+QL NGQSGRNLLSLSHDSLTAAHLI+EDGV LNLFQMQQ
Sbjct: 541  GYVPQSLEARVEVRELVSLDKQLTNGQSGRNLLSLSHDSLTAAHLILEDGVSLNLFQMQQ 600

Query: 601  LQMLALHQLLPPAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVLIENGELISSEG 660
            LQML LHQLLPPAI+K+PLLRNCAWTGKQLFS LLPPDFDYSSPSH V IE GELISSEG
Sbjct: 601  LQMLTLHQLLPPAIVKSPLLRNCAWTGKQLFSILLPPDFDYSSPSHNVFIEKGELISSEG 660

Query: 661  SYWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHK 720
            SYWLRDSGRNLFQALIEHCEGKTLDYL DAQGVLCEWLS RGLSVSLSDLYLSVDSYSH+
Sbjct: 661  SYWLRDSGRNLFQALIEHCEGKTLDYLRDAQGVLCEWLSTRGLSVSLSDLYLSVDSYSHE 720

Query: 721  NMMDDIFCGLQEAEETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQKSAALN 780
            NMMDDIFCGLQEAEETCNLKQLMVD+HK+IL  +DEDNQH+LSIAV+RL YEKQKSAALN
Sbjct: 721  NMMDDIFCGLQEAEETCNLKQLMVDSHKEILIGNDEDNQHLLSIAVERLIYEKQKSAALN 780

Query: 781  QASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLS 840
            QASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNL+KLVQHSMCLGLQHSLVTLS
Sbjct: 781  QASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLMKLVQHSMCLGLQHSLVTLS 840

Query: 841  FSLPHKLTCSAWNSQKMPRYTQKDGLPDRTSSFIPYAVVESSFLSGLNPFECFAHSVTNR 900
            FSLPHKL+C+AWNSQKMPRY QKDGLPDRT SFIPYAVVE+SFLSGLNPFECFAHSVTNR
Sbjct: 841  FSLPHKLSCAAWNSQKMPRYIQKDGLPDRTQSFIPYAVVENSFLSGLNPFECFAHSVTNR 900

Query: 901  DSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSISNELDS 960
            DSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQF YDIDRPTS   E +S
Sbjct: 901  DSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFCYDIDRPTS---ESES 960

Query: 961  ENNNRDHDIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQ 1020
            ENNNRD  IGGHPVGSLAACA+SEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQ
Sbjct: 961  ENNNRDRGIGGHPVGSLAACAISEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQ 1020

Query: 1021 TFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSNVMII----PPGKSILVLGFAT 1080
            TFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVS+VMII    P  K         
Sbjct: 1021 TFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSSVMIIFSPLPSRKKHFSPWVCH 1080

Query: 1081 F----------------------------------------MYARDCPLADSLREDGDTV 1140
            F                                        +  +DCPLADSL EDGDTV
Sbjct: 1081 FHVCKEILKKRRLKMNSVIHSLNMRCDSMRQEGRMNLPSLQIITQDCPLADSLTEDGDTV 1140

Query: 1141 CLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKLRCNHG 1200
            CLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGF EIDRVDI WNDRPKVPK RC+HG
Sbjct: 1141 CLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFTEIDRVDITWNDRPKVPKPRCSHG 1200

Query: 1201 ELYLRVTMSGEGNSRFWATLMNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNS 1260
            ELYLRVTMSGEGNSRFWATLMNNCLP+MDLIDW+RSHPDNTHSLCLAYGIDSGWKYFLNS
Sbjct: 1201 ELYLRVTMSGEGNSRFWATLMNNCLPIMDLIDWTRSHPDNTHSLCLAYGIDSGWKYFLNS 1260

Query: 1261 LESATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPG 1320
            LESATLD+GKTIRLEHLLLV+NSLSATGEFVGLNVKGL+HQREHALVKTPFMQACFSSPG
Sbjct: 1261 LESATLDVGKTIRLEHLLLVSNSLSATGEFVGLNVKGLTHQREHALVKTPFMQACFSSPG 1320

Query: 1321 ACFVKAAKAGIKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQ 1380
            AC +KAAKAGIKDNLSGSLDALAWGR+PSLGTGGQFDILYSG+GHELNKPVDVYNLLGGQ
Sbjct: 1321 ACMIKAAKAGIKDNLSGSLDALAWGRMPSLGTGGQFDILYSGKGHELNKPVDVYNLLGGQ 1380

Query: 1381 SICEKQNAKIESLDKNNISEKYSAQLVLKNGGSTIKGLKKLDSVSKSILREFLTLNDIQK 1413
            S CEKQN KIESLDKN ISEKYSAQL+LKNGGSTIKGLK+LDSVSKSILR+FLTLNDIQK
Sbjct: 1381 STCEKQNTKIESLDKNTISEKYSAQLMLKNGGSTIKGLKRLDSVSKSILRKFLTLNDIQK 1427

[Close]

BLAST of CmUC10G185960 vs. ExPASy Swiss-Prot
Match: Q9LQ02 (DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPD1 PE=1 SV=1)

HSP 1 Score: 1281.5 bits (3315), Expect = 0.0e+00
Identity = 711/1506 (47.21%), Postives = 935/1506 (62.08%), Query Frame = 0


Query: 17   MDDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASSEVSDPKLGLPNPSYQCTTC 76
            M+D+ + EL +P G +T I FS+S   D + ++V+ V+A ++V+D +LGLPNP   C TC
Sbjct: 1    MEDDCE-ELQVPVGTLTSIGFSISNNNDRDKMSVLEVEAPNQVTDSRLGLPNPDSVCRTC 60

Query: 77   GASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKYPPSECALP 136
            G+   K CEGHFGVI F Y+II+PYFL EVA +LNK+CPGCK IR++             
Sbjct: 61   GSKDRKVCEGHFGVINFAYSIINPYFLKEVAALLNKICPGCKYIRKK------------- 120

Query: 137  LSPPHPLILPLHNQFVFTPLDPTLGLTRGVIHSIKDSPPHGDLFEVDYEVEDPTSEYHRP 196
                         QF  T                                ED      +P
Sbjct: 121  -------------QFQIT--------------------------------ED------QP 180

Query: 197  KGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLPSDYWNF 256
            + CRYC  +L   YP M+F+++T ++F++S I+VEV E    K +KR     LP DYW+F
Sbjct: 181  ERCRYC--TLNTGYPLMKFRVTTKEVFRRSGIVVEVNEESLMKLKKRGVL-TLPPDYWSF 240

Query: 257  IPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTPNSHRV 316
            +P+D   +ES  +P R+I+THAQV+ LL  ID + +KK +P  +SL L SFPVTPN +RV
Sbjct: 241  LPQDSNIDESCLKPTRRIITHAQVYALLLGIDQRLIKKDIPMFNSLGLTSFPVTPNGYRV 300

Query: 317  TEMTHSFSNGQRLIFLSPEKLQSK----------------DLVYQQKKIKDTATSS---- 376
            TE+ H F NG RLIF    ++  K                + +   +   +T +SS    
Sbjct: 301  TEIVHQF-NGARLIFDERTRIYKKLVGFEGNTLELSSRVMECMQYSRLFSETVSSSKDSA 360

Query: 377  ------------YGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISE 436
                         GLR++KDV+LGKRSDH FR VVVGDP+++L+EIGIP  +A+RLQ+SE
Sbjct: 361  NPYQKKSDTPKLCGLRFMKDVLLGKRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQVSE 420

Query: 437  HLSSWNMKKLSTSCYLHLVEKGEIFVRREGRLVRVRNVLELNMGDTIYRPLADGDVVLVN 496
            HL+  N ++L TS    L++  E+ VRR  RLV ++ V +L  GD I+R L DGD VL+N
Sbjct: 421  HLNQCNKERLVTSFVPTLLDNKEMHVRRGDRLVAIQ-VNDLQTGDKIFRSLMDGDTVLMN 480

Query: 497  RPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVREL 556
            RPPSIHQHSLIA++V++LP +SV+SLNP+CC PFRGDFDGDCLHGYVPQS++A+VE+ EL
Sbjct: 481  RPPSIHQHSLIAMTVRILPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELDEL 540

Query: 557  VSLDRQLINGQSGRNLLSLSHDSLTAAHLI-MEDGVPLNLFQMQQLQMLALHQLLPPAIL 616
            V+LD+QLIN Q+GRNLLSL  DSLTAA+L+ +E    LN  QMQQLQM    QL PPAI+
Sbjct: 541  VALDKQLINRQNGRNLLSLGQDSLTAAYLVNVEKNCYLNRAQMQQLQMYCPFQLPPPAII 600

Query: 617  KA-PLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVLIENGELIS-SEGSYWLRDSGRNLFQ 676
            KA P      WTG QLF  L PP FDY+ P + V++ NGEL+S SEGS WLRD   N  +
Sbjct: 601  KASPSSTEPQWTGMQLFGMLFPPGFDYTYPLNNVVVSNGELLSFSEGSAWLRDGEGNFIE 660

Query: 677  ALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQEA 736
             L++H +GK LD ++ AQ +L +WL MRGLSVSL+DLYLS D  S KN+ ++I  GL+EA
Sbjct: 661  RLLKHDKGKVLDIIYSAQEMLSQWLLMRGLSVSLADLYLSSDLQSRKNLTEEISYGLREA 720

Query: 737  EETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQKSAALNQASVDAFKKVFRD 796
            E+ CN +QLMV++ +D L  + ED +      + R  YE+QKSA L++ +V AFK  +RD
Sbjct: 721  EQVCNKQQLMVESWRDFLAVNGEDKEEDSVSDLARFCYERQKSATLSELAVSAFKDAYRD 780

Query: 797  IQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFSLPHKLTCSAWN 856
            +Q L Y+Y  + NS L M KAGSKGN+ KLVQHSMC+GLQ+S V+LSF  P +LTC+AWN
Sbjct: 781  VQALAYRYGDQSNSFLIMSKAGSKGNIGKLVQHSMCIGLQNSAVSLSFGFPRELTCAAWN 840

Query: 857  SQKMPRYTQKDGLPDRTSSFIPYAVVESSFLSGLNPFECFAHSVTNRDSSFSDNAEVPGT 916
                P    K      T S++PY V+E+SFL+GLNP E F HSVT+RDSSFS NA++PGT
Sbjct: 841  DPNSPLRGAKGKDSTTTESYVPYGVIENSFLTGLNPLESFVHSVTSRDSSFSGNADLPGT 900

Query: 917  LTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSISNELDSENNNRDHDIGGHP 976
            L+R+L F MRDIY AYDGTVRN++GNQLVQF+Y+ D P                DI G  
Sbjct: 901  LSRRLMFFMRDIYAAYDGTVRNSFGNQLVQFTYETDGPV--------------EDITGEA 960

Query: 977  VGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLSKR 1036
            +GSL+ACA+SEAAYSALDQPISLLE SPLLNLK VLECGSK+   +QT SL+LSE LSK+
Sbjct: 961  LGSLSACALSEAAYSALDQPISLLETSPLLNLKNVLECGSKKGQREQTMSLYLSEYLSKK 1020

Query: 1037 SYGFEYGALGVKNHLERVMFKDIVSNVMIIPPGKSILVLGFATFM--------------- 1096
             +GFEYG+L +KNHLE++ F +IVS  MII    S   +  + ++               
Sbjct: 1021 KHGFEYGSLEIKNHLEKLSFSEIVSTSMIIFSPSSNTKVPLSPWVCHFHISEKVLKRKQL 1080

Query: 1097 ------------------------------YARDCPLADSLREDGDTVCLTVTIAENTKN 1156
                                              C   D   +D D VC+TVT+ E +K+
Sbjct: 1081 SAESVVSSLNEQYKSRNRELKLDIVDLDIQNTNHCSSDDQAMKD-DNVCITVTVVEASKH 1140

Query: 1157 SFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKLRCNH--GELYLRVTMSG 1216
            S L+LD I+ +LI FLL + ++G   I +V+I W DRPK PK   NH  GELYL+VTM G
Sbjct: 1141 SVLELDAIRLVLIPFLLDSPVKGDQGIKKVNILWTDRPKAPKRNGNHLAGELYLKVTMYG 1200

Query: 1217 E-GNSRFWATLMNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDIG 1276
            + G    W  L+  CLP+MD+IDW RSHPDN    C  YGID+G   F+ +LESA  D G
Sbjct: 1201 DRGKRNCWTALLETCLPIMDMIDWGRSHPDNIRQCCSVYGIDAGRSIFVANLESAVSDTG 1260

Query: 1277 KTIRLEHLLLVANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPGACFVKAAKA 1336
            K I  EHLLLVA+SLS TGEFV LN KG S QR+      PF QACFSSP  CF+KAAK 
Sbjct: 1261 KEILREHLLLVADSLSVTGEFVALNAKGWSKQRQVESTPAPFTQACFSSPSQCFLKAAKE 1320

Query: 1337 GIKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQSICEKQNAK 1396
            G++D+L GS+DALAWG++P  GTG QF+I+ S + H    PVDVY+LL       + N+ 
Sbjct: 1321 GVRDDLQGSIDALAWGKVPGFGTGDQFEIIISPKVHGFTTPVDVYDLLSSTKTMRRTNSA 1380

Query: 1397 IESLDKNNISEKYSAQLVLKNGGSTIKGLKKLD--SVSKSILREFLTLNDIQKLSFALRT 1438
             +       S+K + Q       + +K +K LD   +  S+LR   T  +I+ LS +L+ 
Sbjct: 1381 PK-------SDKATVQPFGLLHSAFLKDIKVLDGKGIPMSLLRTIFTWKNIELLSQSLKR 1414

[Close]

BLAST of CmUC10G185960 vs. ExPASy Swiss-Prot
Match: Q5D869 (DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1 PE=1 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 1.2e-97
Identity = 364/1385 (26.28%), Postives = 589/1385 (42.53%), Query Frame = 0


Query: 20   EQDGELPIPSGLVTGINFSVSTQQD--TENIAVMTVDASSEVSDPKLGLPNPSYQCTTCG 79
            E++    I  G + GI F++++  +   ++I+   ++  S++++  LGLP    +C +CG
Sbjct: 2    EEESTSEILDGEIVGITFALASHHEICIQSISESAINHPSQLTNAFLGLPLEFGKCESCG 61

Query: 80   ASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKYPPSECALPL 139
            A+    CEGHFG I+ P  I HP  ++E+ Q+L+ +C  C  I++    K      A   
Sbjct: 62   ATEPDKCEGHFGYIQLPVPIYHPAHVNELKQMLSLLCLKCLKIKK---AKGTSGGLA--- 121

Query: 140  SPPHPLILPLHNQFVFTPLDPTLGL--TRGVIHSIKDSPPHGDLFEVDYEVEDPTSEYHR 199
                               D  LG+        SIKD    G  +    E++ P+    +
Sbjct: 122  -------------------DRLLGVCCEEASQISIKDRASDGASY---LELKLPSRSRLQ 181

Query: 200  PKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENM----SKKYQKRVAKGGLPS 259
            P GC         W    R+       + + ++  EVKE +     +  +K  AKG +P 
Sbjct: 182  P-GC---------WNFLERYGYRYGSDYTRPLLAREVKEILRRIPEESRKKLTAKGHIPQ 241

Query: 260  DYW--NFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDP-----KFLKKFVPAIDSLFL 319
            + +   ++P           PN   +  A   +    +DP     K + K V AI S   
Sbjct: 242  EGYILEYLP---------VPPNCLSVPEASDGFSTMSVDPSRIELKDVLKKVIAIKSSRS 301

Query: 320  NSFPVTPNSHRVTEMTHSFSNGQRLIFLSPEKLQSKDLVYQQKKIKDTATSSYGLRWIKD 379
                   +    +EM        + +  + +  ++ D+ Y   KI D+++S      ++ 
Sbjct: 302  GETNFESHKAEASEMFRVVDTYLQ-VRGTAKAARNIDMRYGVSKISDSSSSKAWTEKMRT 361

Query: 380  VVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWN----MKKLSTSCYL 439
            + + K S    R V+ GD    ++E+GIP  +A+R+   E +S  N     K +     L
Sbjct: 362  LFIRKGSGFSSRSVITGDAYRHVNEVGIPIEIAQRITFEERVSVHNRGYLQKLVDDKLCL 421

Query: 440  HLVEKGEIFVRREGRLVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVK 499
               +    +  R+G     +   EL  G  ++R + DGDVV +NRPP+ H+HSL AL V 
Sbjct: 422  SYTQGSTTYSLRDGS----KGHTELKPGQVVHRRVMDGDVVFINRPPTTHKHSLQALRV- 481

Query: 500  LLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNL 559
             +   + + +NPL CSP   DFDGDC+H + PQSL A+ EV EL S+++QL++  +G+ +
Sbjct: 482  YVHEDNTVKINPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELFSVEKQLLSSHTGQLI 541

Query: 560  LSLSHDSLTAAHLIMEDGVPLNLFQMQQLQMLALHQLLPPAILKAPLLRNCAWTGKQLFS 619
            L +  DSL +  +++E  V L+    QQL M     L PPA+ K+      AWT  Q+  
Sbjct: 542  LQMGSDSLLSLRVMLE-RVFLDKATAQQLAMYGSLSLPPPALRKSS-KSGPAWTVFQILQ 601

Query: 620  TLLPPDFDYSSPSHCVLIENGELISSEGSYWLRDSGRN--LFQALIEHCEGKTLDYLHDA 679
               P     S      L++  +L+  +       S  N  +    +E    +TL +    
Sbjct: 602  LAFPERL--SCKGDRFLVDGSDLLKFDFGVDAMGSIINEIVTSIFLEKGPKETLGFFDSL 661

Query: 680  QGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQEAEETCNLKQLMVDAHKDI 739
            Q +L E L   G S+SL DL     S S  +M  D+   L   E +  + +L +    ++
Sbjct: 662  QPLLMESLFAEGFSLSLEDL-----SMSRADM--DVIHNLIIREISPMVSRLRLSYRDEL 721

Query: 740  LTEDDEDNQHVLSIAVDRLSYEKQKSAALNQASVDAFKKVFRDIQNLVYKYSGKDNSLLT 799
              E+               S  K K  A N      F      I+NL+     K NS +T
Sbjct: 722  QLEN---------------SIHKVKEVAAN------FMLKSYSIRNLI---DIKSNSAIT 781

Query: 800  MFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFSLPHKLTCSAWNSQKMPRYTQKDGLPDRT 859
                       KLVQ +  LGLQ S     ++       + +  +K            R 
Sbjct: 782  -----------KLVQQTGFLGLQLSDKKKFYTKTLVEDMAIFCKRKY----------GRI 841

Query: 860  SSFIPYAVVESSFLSGLNPFECFAHSVTNRD--SSFSDNAEVPGTLTRKLTFLMRDIYTA 919
            SS   + +V+  F  GL+P+E  AHS+  R+     S     PGTL + L  ++RDI   
Sbjct: 842  SSSGDFGIVKGCFFHGLDPYEEMAHSIAAREVIVRSSRGLAEPGTLFKNLMAVLRDIVIT 901

Query: 920  YDGTVRNAYGNQLVQFSYDIDRPTSISNELDSENNNRDHDIGGHPVGSLAACAMSEAAYS 979
             DGTVRN   N ++QF Y +          DSE  ++     G PVG LAA AMS  AY 
Sbjct: 902  NDGTVRNTCSNSVIQFKYGV----------DSERGHQGLFEAGEPVGVLAATAMSNPAYK 961

Query: 980  ALDQPISLLEASPLLN-----LKRVLEC--GSKRNSTKQTFSLFLSEKLSKRSYGFEYGA 1039
            A      +L++SP  N     +K VL C    +  +  +   L+L+E    + +  E  A
Sbjct: 962  A------VLDSSPNSNSSWELMKEVLLCKVNFQNTTNDRRVILYLNECHCGKRFCQENAA 1021

Query: 1040 LGVKNHLERVMFKDIVSNVMI---------------------IPPGKSIL---------- 1099
              V+N L +V  KD     ++                     I   K++L          
Sbjct: 1022 CTVRNKLNKVSLKDTAVEFLVEYRKQPTISEIFGIDSCLHGHIHLNKTLLQDWNISMQDI 1081

Query: 1100 ---------VLGFATFMYARD------------CPLADSLREDG-DTVCLTVTIAENTKN 1159
                      LG      A D            C   D     G D  CLT +      +
Sbjct: 1082 HQKCEDVINSLGQKKKKKATDDFKRTSLSVSECCSFRDPCGSKGSDMPCLTFSYNATDPD 1141

Query: 1160 SFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKLRCNH----GELYLRVTM 1219
                LD + + +   LL  VI+G + I   +I WN       +R  H    GE  L VT+
Sbjct: 1142 LERTLDVLCNTVYPVLLEIVIKGDSRICSANIIWNSSDMTTWIRNRHASRRGEWVLDVTV 1201

Query: 1220 SGEG---NSRFWATLMNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLESAT 1279
                   +   W  ++++CL V+ LID  RS P +   +    G+   ++  +  L ++ 
Sbjct: 1202 EKSAVKQSGDAWRVVIDSCLSVLHLIDTKRSIPYSVKQVQELLGLSCAFEQAVQRLSASV 1259

Query: 1280 LDIGKTIRLEHLLLVANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPGACFVK 1313
              + K +  EH++L+AN+++ +G  +G N  G         +K PF +A   +P  CF K
Sbjct: 1262 RMVSKGVLKEHIILLANNMTCSGTMLGFNSGGYKALTRSLNIKAPFTEATLIAPRKCFEK 1259

[Close]

BLAST of CmUC10G185960 vs. ExPASy Swiss-Prot
Match: P36594 (DNA-directed RNA polymerase II subunit rpb1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpb1 PE=1 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.5e-52
Identity = 234/968 (24.17%), Postives = 416/968 (42.98%), Query Frame = 0


Query: 27  IPSGLVTGINFSVSTQQDTENIAVM------TVDASSE------VSDPKLGLPNPSYQCT 86
           +P   V  + F + + ++  +++V       T+D S +      + DP+LG  +  ++C 
Sbjct: 11  VPLRRVEEVQFGILSPEEIRSMSVAKIEFPETMDESGQRPRVGGLLDPRLGTIDRQFKCQ 70

Query: 87  TCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKYPPSECA 146
           TCG  ++  C GHFG I+    + H  FLS++ ++L  VC  C  ++ +     P     
Sbjct: 71  TCG-ETMADCPGHFGHIELAKPVFHIGFLSKIKKILECVCWNCGKLKID--SSNPKFNDT 130

Query: 147 LPLSPPHPLILPLHNQFVFTPLDPTLGLTRGVIHSIKDSPPHGDLFEVDYEVEDPTSEYH 206
                P   +  + N    T +    GL+ G   +   S P  ++         PT    
Sbjct: 131 QRYRDPKNRLNAVWN-VCKTKMVCDTGLSAG-SDNFDLSNPSANMGHGGCGAAQPTI--- 190

Query: 207 RPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLPSDYW 266
           R  G R  +GS K      R K  +    K+ +  +EV    +    + +A  GL     
Sbjct: 191 RKDGLR-LWGSWK------RGKDESDLPEKRLLSPLEVHTIFTHISSEDLAHLGL----- 250

Query: 267 NFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTPNSH 326
                     E Y RP+  I+T       +  + P  ++  + ++D        +T   H
Sbjct: 251 ---------NEQYARPDWMIIT-------VLPVPPPSVRPSI-SVDGTSRGEDDLT---H 310

Query: 327 RVTEM----------------THSFSNGQRLIFLSPEKLQSKDLVYQQKKIKDTATSSYG 386
           +++++                 H  S  ++L+          ++  Q + ++ +      
Sbjct: 311 KLSDIIKANANVRRCEQEGAPAHIVSEYEQLLQFHVATYMDNEIAGQPQALQKSGRPLKS 370

Query: 387 LR--------WIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWN 446
           +R         ++  ++GKR D   R V+ GDPN+ L E+G+P  +A+ L   E ++ +N
Sbjct: 371 IRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDELGVPRSIAKTLTYPETVTPYN 430

Query: 447 MKKLSTSCYLHLVEKG-------EIFVRREGRLVRVR-----NVLELNMGDTIYRPLADG 506
           + +L       LV  G       +  +R  G  + +R       + L  G  + R + DG
Sbjct: 431 IYQLQ-----ELVRNGPDEHPGAKYIIRDTGERIDLRYHKRAGDIPLRYGWRVERHIRDG 490

Query: 507 DVVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEAR 566
           DVV+ NR PS+H+ S++   ++++P S+   LN    SP+  DFDGD ++ +VPQS E R
Sbjct: 491 DVVIFNRQPSLHKMSMMGHRIRVMPYST-FRLNLSVTSPYNADFDGDEMNMHVPQSEETR 550

Query: 567 VEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAH--LIMEDGVPLNLFQMQQLQMLALHQ 626
            E++E+  + +Q+++ QS + ++ +  D+L       + ++ +  N      L +     
Sbjct: 551 AEIQEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFLTRNAVMNIMLWVPDWDG 610

Query: 627 LLPPAILKAPLLRNCAWTGKQLFSTLLPP------DFDYSSPSH----CVLIENGELI-- 686
           +LPP ++  P      WTGKQ+ S ++P       D D  S S+     +LIENGE+I  
Sbjct: 611 ILPPPVILKP---KVLWTGKQILSLIIPKGINLIRDDDKQSLSNPTDSGMLIENGEIIYG 670

Query: 687 --------SSEG----SYWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLS 746
                   +S+G    + W ++ G        E C+G    + +  Q V+  WL   G S
Sbjct: 671 VVDKKTVGASQGGLVHTIW-KEKGP-------EICKG----FFNGIQRVVNYWLLHNGFS 730

Query: 747 VSLSDLYLSVDSYSHKNMMDDIFCGLQEAEETCNLKQLMVDAHKDILTEDDEDNQHVLSI 806
           + + D     D+      M ++   ++EA     + + + DA  + L  +          
Sbjct: 731 IGIGDTIADADT------MKEVTRTVKEARR--QVAECIQDAQHNRLKPEPG-------- 790

Query: 807 AVDRLSYEKQKSAALNQASVDAFKKVFRDIQNLVYKYSGKD-NSLLTMFKAGSKGNLLKL 866
              R S+E + S  LNQA         RD      ++S KD N++  M  AGSKG+ + +
Sbjct: 791 MTLRESFEAKVSRILNQA---------RDNAGRSAEHSLKDSNNVKQMVAAGSKGSFINI 850

Query: 867 VQHSMCLGLQHSLVTLSFSLPHKLTCSAWNSQKMPRYTQKDGLPDRTSSFIPYAVVESSF 918
            Q S C+G Q         +  K     +  + +P + + D  P+          +E+S+
Sbjct: 851 SQMSACVGQQ--------IVEGKRIPFGFKYRTLPHFPKDDDSPESR------GFIENSY 877

[Close]

BLAST of CmUC10G185960 vs. ExPASy Swiss-Prot
Match: P35084 (DNA-directed RNA polymerase II subunit rpb1 OS=Dictyostelium discoideum OX=44689 GN=polr2a PE=2 SV=2)

HSP 1 Score: 201.4 bits (511), Expect = 7.1e-50
Identity = 235/956 (24.58%), Postives = 400/956 (41.84%), Query Frame = 0


Query: 32  VTGINFSVSTQQDTENIAVMTVD----------ASSEVSDPKLGLPNPSYQCTTCGASSL 91
           V  + F + +  +  N++V  V+           +  + DP +G  + + +C TC + ++
Sbjct: 15  VKRVQFGILSPDEIRNMSVARVEHPETYENGKPKAGGLLDPAMGTIDKTQRCQTC-SGTM 74

Query: 92  KSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKYPPSECALPLSPPH 151
             C GHFG I+    + H  F+  V ++L  VC  C  +  +   ++   +     +  H
Sbjct: 75  AECPGHFGHIELAKPVFHIGFIDTVLKILRCVCYHCSKLLTDT-NEHSFRQALKIRNQKH 134

Query: 152 PLILPLHNQFVFTPLDPTLGLTRGVIHSIKDSPPHGDLFEVDYEVEDPTSEYHRPKGCRY 211
            L     N  V    +  +    G      +     DL + D E++ P     +  GC  
Sbjct: 135 RL-----NAVVDCCKNKKVCAIGG------EEEEEHDLSKTDEELDKPV----KHGGCGN 194

Query: 212 CFGSL--KDWYPPMRFKLSTTDMF-KKSMIMVEVKENMSKKYQKRVAKG-GLPSDY---- 271
               +  +D    + FK  T +   KKS++  E   N+ K+ +   ++  G+  D+    
Sbjct: 195 VLPKITKEDLKIIVEFKDVTDESIEKKSVLSAERVLNILKRIKDEDSRAMGINPDWARAD 254

Query: 272 WNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTPNS 331
           W  I           RP+  + T  +      D+  K L   V A   L        P +
Sbjct: 255 W-MIATVLPVPPPPVRPSIMMDTSTRGE---DDLTHK-LADIVKANRELQRQEKNGAP-A 314

Query: 332 HRVTEMT-----HSFSNGQRLIFLSPEKLQSKDLVYQQKKIKDTATSSYGLRWIKDVVLG 391
           H + E T     H  +     I   P+  Q        K I+       G   I+  ++G
Sbjct: 315 HIIAEATQFLQFHVATYVDNEIPGLPQAQQRSG--RPLKSIRQRLKGKEGR--IRGNLMG 374

Query: 392 KRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKG-- 451
           KR D   R V+  DPN+ + ++G+P  +A  L   E ++ +N+ K+       L+  G  
Sbjct: 375 KRVDFSARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMR-----ELIRNGPS 434

Query: 452 -----EIFVRREG-----RLVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIA 511
                +  +R +G     R V+  +   L  G  + R + DGDVV+ NR PS+H+ S++ 
Sbjct: 435 EHPGAKYIIREDGTRFDLRFVKKVSDTHLECGYKVERHINDGDVVIFNRQPSLHKMSMMG 494

Query: 512 LSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQS 571
             +K++P S+   LN    SP+  DFDGD ++ +VPQ+LE R EV E++ + RQ+++ QS
Sbjct: 495 HRIKVMPYST-FRLNLSVTSPYNADFDGDEMNLHVPQTLETRAEVIEIMMVPRQIVSPQS 554

Query: 572 GRNLLSLSHDSLTAAHLIMEDGVPLNLFQMQQLQMLAL-------HQLLPPAILKAPLLR 631
            R ++ +  D+L  + L  +     + F  + L M  L        ++ PPAILK   L 
Sbjct: 555 NRPVMGIVQDTLLGSRLFTK----RDCFMEKDLVMNILMWLPSWDGKVPPPAILKPKQL- 614

Query: 632 NCAWTGKQLFSTLLP--------PDFDYSSPSHC------VLIENGELISSEGSYWLRD- 691
              WTGKQLFS ++P           +   P+ C      V+IE GEL++  G    R  
Sbjct: 615 ---WTGKQLFSLIIPDINLIRFTSTHNDKEPNECSAGDTRVIIERGELLA--GILCKRSL 674

Query: 692 ---SGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLY--------LSVD 751
              +G  +   + EH       ++   Q V+  WL  RG ++ + D          +++ 
Sbjct: 675 GAANGSIIHVVMNEHGHDTCRLFIDQTQTVVNHWLINRGFTMGIGDTIADSATMAKVTLT 734

Query: 752 SYSHKNMMDDIFCGLQEAEETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQK 811
             S KN + ++    Q        KQ      K ++   ++    VL+ A D      Q 
Sbjct: 735 ISSAKNQVKELIIKAQN-------KQFECQPGKSVIETFEQKVNQVLNKARDTAGSSAQD 794

Query: 812 SAALNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHS 871
           S +                         +DN+L  M  AGSKG+ + + Q   C+G Q  
Sbjct: 795 SLS-------------------------EDNNLKAMVTAGSKGSFINISQMMACVGQQ-- 854

Query: 872 LVTLSFSLPHKLTCSAWNSQKMPRYTQKDGLPDRTSSFIPYAVVESSFLSGLNPFECFAH 918
                 ++  K     + S+ +P +T+ D  P+          VE+S+L GL P E F H
Sbjct: 855 ------NVEGKRIPFGFQSRTLPHFTKDDYGPESR------GFVENSYLRGLTPQEFFFH 880

[Close]

BLAST of CmUC10G185960 vs. ExPASy Swiss-Prot
Match: P17546 (DNA-directed RNA polymerase II subunit RPB1-A OS=Trypanosoma brucei brucei OX=5702 GN=TRP4.8 PE=1 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 9.5e-47
Identity = 163/598 (27.26%), Postives = 281/598 (46.99%), Query Frame = 0


Query: 347 KKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHL 406
           K + +     YG   ++  ++GKR D   R V+ GDPNI++ E+G+P  VA  L   E +
Sbjct: 331 KSLTERLKGKYGR--LRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERV 390

Query: 407 SSWNMKKLSTSCYLHLVEKGEIFVRREG-----RLVRVRNVLELNMGDTIYRPLADGDVV 466
           ++ N K+L+      +           G      L+R R+ + LN+GD + R + +GDVV
Sbjct: 391 NTVNKKRLTEFARRTVYPSANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVV 450

Query: 467 LVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEV 526
           L NR P++H+ S++   V++L  S+   LN  C +P+  DFDGD ++ +VPQSL  + E+
Sbjct: 451 LFNRQPTLHRMSMMGHRVRVLNYST-FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAEL 510

Query: 527 RELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVPLNLFQMQQLQM-LALHQLLPP 586
            E++ + +  ++       + +  DSL  ++ + +    L+ + +Q + + L L QL  P
Sbjct: 511 IEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIP 570

Query: 587 AILKAPLLRNCAWTGKQLFSTLLP-----------PDFDYSSPSHCVLIENGELISSEGS 646
           AILK   L    WTGKQ+FS +LP           P F ++     V+I  G+L+    +
Sbjct: 571 AILKPRPL----WTGKQVFSLILPEVNHPATPQDRPPFPHN--DSVVMIRRGQLLCGPIT 630

Query: 647 YWLRDS--GRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSH 706
             +  +  G  +     EH   +   +++  Q V   +L   G SV + D     D+   
Sbjct: 631 KSIVGAAPGSLIHVIFNEHGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDTL-- 690

Query: 707 KNMMDDIFCGLQEAEETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQKSAAL 766
              M+D+    +      N++++   A+   L    +    +L       S+E   ++AL
Sbjct: 691 -RQMNDVLVKTRR-----NVEKIGAAANNRTLNR--KAGMTLLQ------SFEADVNSAL 750

Query: 767 NQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQH---SL 826
           N+   +A KK   +++        + NS   M +AGSKG  L + Q ++ +G Q+   S 
Sbjct: 751 NKCREEAAKKALSNVR--------RTNSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSR 810

Query: 827 VTLSF---SLPHKLTCSAWNSQKMPRYTQKDGLPDRTSSFIPYAVVESSFLSGLNPFECF 886
           +   F   +LPH +      + +        G+ +R             ++ GL P E F
Sbjct: 811 IPFGFRRRTLPHFMLDDYGETSR--------GMANR------------GYVEGLKPHEFF 870

Query: 887 AHSVTNRDSSFSDNAEV--PGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDID 918
            H++  R+       +    G L RKL   + D++ AYDGTVRNA  ++L+QF Y  D
Sbjct: 871 FHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRNA-NDELIQFMYGED 874

[Close]

BLAST of CmUC10G185960 vs. ExPASy TrEMBL
Match: A0A5D3D780 (DNA-directed RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G00770 PE=4 SV=1)

HSP 1 Score: 2515.0 bits (6517), Expect = 0.0e+00
Identity = 1277/1494 (85.48%), Postives = 1319/1494 (88.29%), Query Frame = 0


Query: 1    MSSAGDFRPGQKVMIHMDDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASSEVS 60
            MSSA DFRPGQKVMIHM+DEQDGELPIPSG +TGINFSVS QQD ENIAV+TVDA+SEVS
Sbjct: 1    MSSAEDFRPGQKVMIHMEDEQDGELPIPSGRLTGINFSVSNQQDIENIAVITVDAASEVS 60

Query: 61   DPKLGLPNPSYQCTTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSI 120
            DPKLGLPNPSYQCTTCGASSLK CEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSI
Sbjct: 61   DPKLGLPNPSYQCTTCGASSLKFCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSI 120

Query: 121  RQELWGKYPPSECALPLSPPHPLILPLHNQFVFTPLDPTLGLTRGVIHSIKDSPPHGDLF 180
            RQELWGK       L                                   ++S P    F
Sbjct: 121  RQELWGKVRKKMMTL---------------------------------CHRNSSP----F 180

Query: 181  EVDYEVEDPTSEYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKY 240
            E+   VEDPTS+Y+RPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKY
Sbjct: 181  EIFIWVEDPTSDYNRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKY 240

Query: 241  QKRVAKGGLPSDYWNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAID 300
            QKRVAKGGLPSDYW+FIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAID
Sbjct: 241  QKRVAKGGLPSDYWDFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAID 300

Query: 301  SLFLNSFPVTPNSHRVTEMTHSFSNGQRL------------------------------- 360
            SLFLNSFPVTPNSHRVTEM HSFSNGQRL                               
Sbjct: 301  SLFLNSFPVTPNSHRVTEMAHSFSNGQRLIFDERTRAYKKVVDFRGTANELGSRVLDCLK 360

Query: 361  -------IFLSPEKLQSKDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGD 420
                   IFLSPEKLQSKDLVYQQKKIKDTATSS GLRWIKDVVLGKRSDHCFRMVVVGD
Sbjct: 361  ISKAIYKIFLSPEKLQSKDLVYQQKKIKDTATSSSGLRWIKDVVLGKRSDHCFRMVVVGD 420

Query: 421  PNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIFVRREGRLVRVRNV 480
            PNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEI+VRREGRLVRVRNV
Sbjct: 421  PNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRREGRLVRVRNV 480

Query: 481  LELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDF 540
            LELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVS+VLSLNPLCCSPFRGDF
Sbjct: 481  LELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSAVLSLNPLCCSPFRGDF 540

Query: 541  DGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVPLN 600
            DGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLI+EDGV LN
Sbjct: 541  DGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLILEDGVSLN 600

Query: 601  LFQMQQLQMLALHQLLPPAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVLIENGE 660
            LFQMQQLQML LHQLLPPAI+K+PLLRNCAWTGKQLFS LLPPDF+YSSPSH V IE GE
Sbjct: 601  LFQMQQLQMLTLHQLLPPAIVKSPLLRNCAWTGKQLFSILLPPDFEYSSPSHNVFIEKGE 660

Query: 661  LISSEGSYWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSV 720
            LISSEGSYWLRDSGRNLFQALIEHCEGKTLDYL DAQGVLCEWLSMRGLSVSLSDLYLSV
Sbjct: 661  LISSEGSYWLRDSGRNLFQALIEHCEGKTLDYLRDAQGVLCEWLSMRGLSVSLSDLYLSV 720

Query: 721  DSYSHKNMMDDIFCGLQEAEETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQ 780
            DSYSHKNMMDDIFCGLQEAEETCNLKQLMVD+HK+ILT +DEDNQH+LSIAV+ L YEKQ
Sbjct: 721  DSYSHKNMMDDIFCGLQEAEETCNLKQLMVDSHKEILTGNDEDNQHLLSIAVEHLIYEKQ 780

Query: 781  KSAALNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQH 840
            KSAALNQASVDAFKKVFRDIQNLV+KYSGKDNSLLTMFKAGSKGNL+KLVQHSMCLGLQH
Sbjct: 781  KSAALNQASVDAFKKVFRDIQNLVHKYSGKDNSLLTMFKAGSKGNLMKLVQHSMCLGLQH 840

Query: 841  SLVTLSFSLPHKLTCSAWNSQKMPRYTQKDGLPDRTSSFIPYAVVESSFLSGLNPFECFA 900
            SLVTLSFSLPHKL+CSAWNSQKMPRY Q+DGLPDRT SFIPYAVVE+SFLSGLNPFECFA
Sbjct: 841  SLVTLSFSLPHKLSCSAWNSQKMPRYIQEDGLPDRTQSFIPYAVVENSFLSGLNPFECFA 900

Query: 901  HSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSI 960
            HSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQF YDIDRPTS+
Sbjct: 901  HSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFCYDIDRPTSV 960

Query: 961  SNELDSENNNRDHDIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSK 1020
            S+E DSE NNRD DIGGHPVGSLAACA SEAAYSALDQPISLLEASPLLNLKRVLECGSK
Sbjct: 961  SSESDSE-NNRDRDIGGHPVGSLAACAFSEAAYSALDQPISLLEASPLLNLKRVLECGSK 1020

Query: 1021 RNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSNVMII----PPGKSIL 1080
            RNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVS+VMII    P  K   
Sbjct: 1021 RNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSSVMIIFSPQPSRKKHF 1080

Query: 1081 VLGFATF----------------------------------------MYARDCPLADSLR 1140
                  F                                        +  +DCPLADSL 
Sbjct: 1081 SPWVCHFHVCKDILKKRRLKMNSVIHSLNMRCDSVRQEGRMNLPSLQIITQDCPLADSLT 1140

Query: 1141 EDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPK 1200
            EDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDI WNDRPKVPK
Sbjct: 1141 EDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDITWNDRPKVPK 1200

Query: 1201 LRCNHGELYLRVTMSGEGNSRFWATLMNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGW 1260
             RC+HGELYLRVTMSGEGNSRFWATL+NNCLP+MDLIDW+RSHPDNTHSLCLAYGIDSGW
Sbjct: 1201 PRCSHGELYLRVTMSGEGNSRFWATLINNCLPIMDLIDWTRSHPDNTHSLCLAYGIDSGW 1260

Query: 1261 KYFLNSLESATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGLSHQREHALVKTPFMQA 1320
            KYFLNSLE ATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGL+HQREHALVKTPFMQA
Sbjct: 1261 KYFLNSLECATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGLTHQREHALVKTPFMQA 1320

Query: 1321 CFSSPGACFVKAAKAGIKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVY 1380
            CFSSPGAC +KAAKAGIKDNLSGSLDALAWGR+PSLGTGGQFDILYSG+GHELNKPVDVY
Sbjct: 1321 CFSSPGACLIKAAKAGIKDNLSGSLDALAWGRMPSLGTGGQFDILYSGKGHELNKPVDVY 1380

Query: 1381 NLLGGQSICEKQNAKIESLDKNNISEKYSAQLVLKNGGSTIKGLKKLDSVSKSILREFLT 1413
            NLLGGQS CEKQNAKIES+DKNNISEKYSAQLVLKNGGSTIKGLK+LDSVSKSILR+FLT
Sbjct: 1381 NLLGGQSTCEKQNAKIESVDKNNISEKYSAQLVLKNGGSTIKGLKRLDSVSKSILRKFLT 1440

[Close]

BLAST of CmUC10G185960 vs. ExPASy TrEMBL
Match: A0A0A0L2L4 (DNA-directed RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_3G039340 PE=4 SV=1)

HSP 1 Score: 2493.8 bits (6462), Expect = 0.0e+00
Identity = 1261/1488 (84.74%), Postives = 1305/1488 (87.70%), Query Frame = 0


Query: 1    MSSAGDFRPGQKVMIHMDDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASSEVS 60
            MSS  DFRPGQKVMIHM+DEQDGELPIPSGL+TGINFSVS QQD ENIAV+TVDA++EVS
Sbjct: 1    MSSVEDFRPGQKVMIHMEDEQDGELPIPSGLLTGINFSVSNQQDIENIAVITVDAANEVS 60

Query: 61   DPKLGLPNPSYQCTTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSI 120
            DPKLGLPNPSYQCTTCGASSLK CEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKS+
Sbjct: 61   DPKLGLPNPSYQCTTCGASSLKFCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSV 120

Query: 121  RQELWGKYPPSECALPLSPPHPLILPLHNQFVFTPLDPTLGLTRGVIHSIKDSPPHGDLF 180
            RQELWGK                                                     
Sbjct: 121  RQELWGK----------------------------------------------------- 180

Query: 181  EVDYEVEDPTSEYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKY 240
                 VEDPTS+Y+RPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKY
Sbjct: 181  -----VEDPTSDYNRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKY 240

Query: 241  QKRVAKGGLPSDYWNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAID 300
            QKRVAKGGLPSDYW+FIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAID
Sbjct: 241  QKRVAKGGLPSDYWDFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAID 300

Query: 301  SLFLNSFPVTPNSHRVTEMTHSFSNGQRLIF----------------------------- 360
            SLFLNSFPVTPNSHRVTEM HSFSNGQRLIF                             
Sbjct: 301  SLFLNSFPVTPNSHRVTEMAHSFSNGQRLIFDERTRAYKKVVDFRGTANELGSRVLDCLK 360

Query: 361  ---LSPEKLQSKDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELS 420
               LSPEKLQ+KDLVYQQKKIKDTATSS GLRWIKDVVLGKRSDHCFRMVVVGDPNIELS
Sbjct: 361  ISKLSPEKLQNKDLVYQQKKIKDTATSSSGLRWIKDVVLGKRSDHCFRMVVVGDPNIELS 420

Query: 421  EIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIFVRREGRLVRVRNVLELNMG 480
            EIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEI+VRREGRLVRVRNVLELNMG
Sbjct: 421  EIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNMG 480

Query: 481  DTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLH 540
            DTIYRPLADGD+VLVNRPPSIHQHSLIALSVKLLPVS+VLSLNPLCCSPFRGDFDGDCLH
Sbjct: 481  DTIYRPLADGDIVLVNRPPSIHQHSLIALSVKLLPVSAVLSLNPLCCSPFRGDFDGDCLH 540

Query: 541  GYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVPLNLFQMQQ 600
            GYVPQSLEARVEVRELVSLD+QL NGQSGRNLLSLSHDSLTAAHLI+EDGV LNLFQMQQ
Sbjct: 541  GYVPQSLEARVEVRELVSLDKQLTNGQSGRNLLSLSHDSLTAAHLILEDGVSLNLFQMQQ 600

Query: 601  LQMLALHQLLPPAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVLIENGELISSEG 660
            LQML LHQLLPPAI+K+PLLRNCAWTGKQLFS LLPPDFDYSSPSH V IE GELISSEG
Sbjct: 601  LQMLTLHQLLPPAIVKSPLLRNCAWTGKQLFSILLPPDFDYSSPSHNVFIEKGELISSEG 660

Query: 661  SYWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHK 720
            SYWLRDSGRNLFQALIEHCEGKTLDYL DAQGVLCEWLS RGLSVSLSDLYLSVDSYSH+
Sbjct: 661  SYWLRDSGRNLFQALIEHCEGKTLDYLRDAQGVLCEWLSTRGLSVSLSDLYLSVDSYSHE 720

Query: 721  NMMDDIFCGLQEAEETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQKSAALN 780
            NMMDDIFCGLQEAEETCNLKQLMVD+HK+IL  +DEDNQH+LSIAV+RL YEKQKSAALN
Sbjct: 721  NMMDDIFCGLQEAEETCNLKQLMVDSHKEILIGNDEDNQHLLSIAVERLIYEKQKSAALN 780

Query: 781  QASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLS 840
            QASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNL+KLVQHSMCLGLQHSLVTLS
Sbjct: 781  QASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLMKLVQHSMCLGLQHSLVTLS 840

Query: 841  FSLPHKLTCSAWNSQKMPRYTQKDGLPDRTSSFIPYAVVESSFLSGLNPFECFAHSVTNR 900
            FSLPHKL+C+AWNSQKMPRY QKDGLPDRT SFIPYAVVE+SFLSGLNPFECFAHSVTNR
Sbjct: 841  FSLPHKLSCAAWNSQKMPRYIQKDGLPDRTQSFIPYAVVENSFLSGLNPFECFAHSVTNR 900

Query: 901  DSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSISNELDS 960
            DSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQF YDIDRPTS   E +S
Sbjct: 901  DSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFCYDIDRPTS---ESES 960

Query: 961  ENNNRDHDIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQ 1020
            ENNNRD  IGGHPVGSLAACA+SEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQ
Sbjct: 961  ENNNRDRGIGGHPVGSLAACAISEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQ 1020

Query: 1021 TFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSNVMII----PPGKSILVLGFAT 1080
            TFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVS+VMII    P  K         
Sbjct: 1021 TFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSSVMIIFSPLPSRKKHFSPWVCH 1080

Query: 1081 F----------------------------------------MYARDCPLADSLREDGDTV 1140
            F                                        +  +DCPLADSL EDGDTV
Sbjct: 1081 FHVCKEILKKRRLKMNSVIHSLNMRCDSMRQEGRMNLPSLQIITQDCPLADSLTEDGDTV 1140

Query: 1141 CLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKLRCNHG 1200
            CLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGF EIDRVDI WNDRPKVPK RC+HG
Sbjct: 1141 CLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFTEIDRVDITWNDRPKVPKPRCSHG 1200

Query: 1201 ELYLRVTMSGEGNSRFWATLMNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNS 1260
            ELYLRVTMSGEGNSRFWATLMNNCLP+MDLIDW+RSHPDNTHSLCLAYGIDSGWKYFLNS
Sbjct: 1201 ELYLRVTMSGEGNSRFWATLMNNCLPIMDLIDWTRSHPDNTHSLCLAYGIDSGWKYFLNS 1260

Query: 1261 LESATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPG 1320
            LESATLD+GKTIRLEHLLLV+NSLSATGEFVGLNVKGL+HQREHALVKTPFMQACFSSPG
Sbjct: 1261 LESATLDVGKTIRLEHLLLVSNSLSATGEFVGLNVKGLTHQREHALVKTPFMQACFSSPG 1320

Query: 1321 ACFVKAAKAGIKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQ 1380
            AC +KAAKAGIKDNLSGSLDALAWGR+PSLGTGGQFDILYSG+GHELNKPVDVYNLLGGQ
Sbjct: 1321 ACMIKAAKAGIKDNLSGSLDALAWGRMPSLGTGGQFDILYSGKGHELNKPVDVYNLLGGQ 1380

Query: 1381 SICEKQNAKIESLDKNNISEKYSAQLVLKNGGSTIKGLKKLDSVSKSILREFLTLNDIQK 1413
            S CEKQN KIESLDKN ISEKYSAQL+LKNGGSTIKGLK+LDSVSKSILR+FLTLNDIQK
Sbjct: 1381 STCEKQNTKIESLDKNTISEKYSAQLMLKNGGSTIKGLKRLDSVSKSILRKFLTLNDIQK 1427

[Close]

BLAST of CmUC10G185960 vs. ExPASy TrEMBL
Match: A0A1S4DY39 (DNA-directed RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103490982 PE=4 SV=1)

HSP 1 Score: 2474.5 bits (6412), Expect = 0.0e+00
Identity = 1261/1498 (84.18%), Postives = 1301/1498 (86.85%), Query Frame = 0


Query: 1    MSSAGDFRPGQKVMIHMDDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASSEVS 60
            MSSA DFRPGQKVMIHM+DEQDGELPIPSG +TGINFSVS QQD ENIAV+TVDA+SEVS
Sbjct: 1    MSSAEDFRPGQKVMIHMEDEQDGELPIPSGRLTGINFSVSNQQDIENIAVITVDAASEVS 60

Query: 61   DPKLGLPNPSYQCTTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSI 120
            DPKLGLPNPSYQCTTCGASSLK CEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSI
Sbjct: 61   DPKLGLPNPSYQCTTCGASSLKFCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSI 120

Query: 121  RQELWGKYPPSECALPLSPPHPLILPLHNQFVFTPLDPTLGLTRGVIHSIKDSPPHGDLF 180
            RQELWGK                                                     
Sbjct: 121  RQELWGK----------------------------------------------------- 180

Query: 181  EVDYEVEDPTSEYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKY 240
                 VEDPTS+Y+RPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKY
Sbjct: 181  -----VEDPTSDYNRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKY 240

Query: 241  QKRVAKGGLPSDYWNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAID 300
            QKRVAKGGLPSDYW+FIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAID
Sbjct: 241  QKRVAKGGLPSDYWDFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAID 300

Query: 301  SLFLNSFPVTPNSHRVTEMTHSFSNGQRLIF---------------------------LS 360
            SLFLNSFPVTPNSHRVTEM HSFSNGQRLIF                           L 
Sbjct: 301  SLFLNSFPVTPNSHRVTEMAHSFSNGQRLIFDERTRAYKKVVDFRGTANELGSRVLDCLK 360

Query: 361  PEKLQSKDLVY---------------QQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMV 420
              K   K  V+                 KKIKDTATSS GLRWIKDVVLGKRSDHCFRMV
Sbjct: 361  ISKAIYKIFVFCLNHPREVTKXRFGLPAKKIKDTATSSSGLRWIKDVVLGKRSDHCFRMV 420

Query: 421  VVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIFVRREGRLVR 480
            VVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEI+VRREGRLVR
Sbjct: 421  VVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRREGRLVR 480

Query: 481  VRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPF 540
            VRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVS+VLSLNPLCCSPF
Sbjct: 481  VRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSAVLSLNPLCCSPF 540

Query: 541  RGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDG 600
            RGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLI+EDG
Sbjct: 541  RGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLILEDG 600

Query: 601  VPLNLFQMQQLQMLALHQLLPPAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVLI 660
            V LNLFQMQQLQML LHQLLPPAI+K+PLLRNCAWTGKQLFS LLPPDF+YSSPSH V I
Sbjct: 601  VSLNLFQMQQLQMLTLHQLLPPAIVKSPLLRNCAWTGKQLFSILLPPDFEYSSPSHNVFI 660

Query: 661  ENGELISSEGSYWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDL 720
            E GELISSEGSYWLRDSGRNLFQALIEHCEGKTLDYL DAQGVLCEWLSMRGLSVSLSDL
Sbjct: 661  EKGELISSEGSYWLRDSGRNLFQALIEHCEGKTLDYLRDAQGVLCEWLSMRGLSVSLSDL 720

Query: 721  YLSVDSYSHKNMMDDIFCGLQEAEETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLS 780
            YLSVDSYSHKNMMDDIFCGLQEAEETCNLKQLMVD+HK+ILT +DEDNQH+LSIAV+ L 
Sbjct: 721  YLSVDSYSHKNMMDDIFCGLQEAEETCNLKQLMVDSHKEILTGNDEDNQHLLSIAVEHLI 780

Query: 781  YEKQKSAALNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCL 840
            YEKQKSAALNQASVDAFKKVFRDIQNLV+KYSGKDNSLLTMFKAGSKGNL+KLVQHSMCL
Sbjct: 781  YEKQKSAALNQASVDAFKKVFRDIQNLVHKYSGKDNSLLTMFKAGSKGNLMKLVQHSMCL 840

Query: 841  GLQHSLVTLSFSLPHKLTCSAWNSQKMPRYTQKDGLPDRTSSFIPYAVVESSFLSGLNPF 900
            GLQHSLVTLSFSLPHKL+CSAWNSQKMPRY Q+DGLPDRT SFIPYAVVE+SFLSGLNPF
Sbjct: 841  GLQHSLVTLSFSLPHKLSCSAWNSQKMPRYIQEDGLPDRTQSFIPYAVVENSFLSGLNPF 900

Query: 901  ECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDR 960
            ECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQF YDIDR
Sbjct: 901  ECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFCYDIDR 960

Query: 961  PTSISNELDSENNNRDHDIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLE 1020
            PTS+S+E DSE NNRD DIGGHPVGSLAACA SEAAYSALDQPISLLEASPLLNLKRVLE
Sbjct: 961  PTSVSSESDSE-NNRDRDIGGHPVGSLAACAFSEAAYSALDQPISLLEASPLLNLKRVLE 1020

Query: 1021 CGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSNVMII----PPG 1080
            CGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVS+VMII    P  
Sbjct: 1021 CGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSSVMIIFSPQPSR 1080

Query: 1081 KSILVLGFATF----------------------------------------MYARDCPLA 1140
            K         F                                        +  +DCPLA
Sbjct: 1081 KKHFSPWVCHFHVCKDILKKRRLKMNSVIHSLNMRCDSVRQEGRMNLPSLQIITQDCPLA 1140

Query: 1141 DSLREDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRP 1200
            DSL EDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDI WNDRP
Sbjct: 1141 DSLTEDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDITWNDRP 1200

Query: 1201 KVPKLRCNHGELYLRVTMSGEGNSRFWATLMNNCLPVMDLIDWSRSHPDNTHSLCLAYGI 1260
            KVPK RC+HGELYLRVTMSGEGNSRFWATL+NNCLP+MDLIDW+RSHPDNTHSLCLAYGI
Sbjct: 1201 KVPKPRCSHGELYLRVTMSGEGNSRFWATLINNCLPIMDLIDWTRSHPDNTHSLCLAYGI 1260

Query: 1261 DSGWKYFLNSLESATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGLSHQREHALVKTP 1320
            DSGWKYFLNSLE ATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGL+HQREHALVKTP
Sbjct: 1261 DSGWKYFLNSLECATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGLTHQREHALVKTP 1320

Query: 1321 FMQACFSSPGACFVKAAKAGIKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKP 1380
            FMQACFSSPGAC +KAAKAGIKDNLSGSLDALAWGR+PSLGTGGQFDILYSG+GHELNKP
Sbjct: 1321 FMQACFSSPGACLIKAAKAGIKDNLSGSLDALAWGRMPSLGTGGQFDILYSGKGHELNKP 1380

Query: 1381 VDVYNLLGGQSICEKQNAKIESLDKNNISEKYSAQLVLKNGGSTIKGLKKLDSVSKSILR 1413
            VDVYNLLGGQS CEKQNAKIES+DKNNISEKYSAQLVLKNGGSTIKGLK+LDSVSKSILR
Sbjct: 1381 VDVYNLLGGQSTCEKQNAKIESVDKNNISEKYSAQLVLKNGGSTIKGLKRLDSVSKSILR 1439

[Close]

BLAST of CmUC10G185960 vs. ExPASy TrEMBL
Match: A0A6J1FKU9 (DNA-directed RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111444908 PE=4 SV=1)

HSP 1 Score: 2363.2 bits (6123), Expect = 0.0e+00
Identity = 1204/1497 (80.43%), Postives = 1273/1497 (85.04%), Query Frame = 0


Query: 1    MSSAGDFRPGQKVMIHMDDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASSEVS 60
            M+ AG FR GQK M HM+DEQD EL IPSG++ G+NFSVSTQQD ENIAV+ ++A+ EVS
Sbjct: 1    MNFAGGFRSGQKAMNHMEDEQDSELQIPSGVLVGVNFSVSTQQDMENIAVINIEAACEVS 60

Query: 61   DPKLGLPNPSYQCTTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSI 120
            DPKLGLPNPSYQCTTCGAS LK CEGHFG IKFPYTIIHPYFLSEVAQVLNKVCPGCKSI
Sbjct: 61   DPKLGLPNPSYQCTTCGASVLKCCEGHFGAIKFPYTIIHPYFLSEVAQVLNKVCPGCKSI 120

Query: 121  RQELWGKYPPSECALPLSPPHPLILPLHNQFVFTPLDPTLGLTRGVIHSIKDSPPHGDLF 180
            R+ELWGK                                                     
Sbjct: 121  RRELWGK----------------------------------------------------- 180

Query: 181  EVDYEVEDPTSEYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKY 240
                 VEDPTS++HRPKGCRYCFGSLKDWYPPMRFKLSTTDMF+KSMIMVEVKENMSKKY
Sbjct: 181  -----VEDPTSDFHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFRKSMIMVEVKENMSKKY 240

Query: 241  QKRVAKGGLPSDYWNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAID 300
            QKRVA+GGLP DYWNFIPKDEQQEESYCRPNRK+LTHAQVHYLLKDIDPKFLKKFV A D
Sbjct: 241  QKRVARGGLPPDYWNFIPKDEQQEESYCRPNRKVLTHAQVHYLLKDIDPKFLKKFVSATD 300

Query: 301  SLFLNSFPVTPNSHRVTEMTHSFSNGQRLIF----------------------------- 360
            SLFLNSFPVTPN HRVTEMTHSFS+GQRL+F                             
Sbjct: 301  SLFLNSFPVTPNCHRVTEMTHSFSSGQRLVFDERTRAYKKLVDFRGTANELGSRVLDCLK 360

Query: 361  ---LSPEKLQSKDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELS 420
               LSPEKL+SKDL+YQQKKIKDTATSS GLRWIKDVVLGKRSDHCFRMVVVGDPNIELS
Sbjct: 361  ISKLSPEKLESKDLIYQQKKIKDTATSSNGLRWIKDVVLGKRSDHCFRMVVVGDPNIELS 420

Query: 421  EIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIFVRREGRLVRVRNVLELNMG 480
            EIGIPCHVAERLQISEHLSSWNMKKLSTSCYL LVEKGEIFVRREGRLVRVR+VLEL+MG
Sbjct: 421  EIGIPCHVAERLQISEHLSSWNMKKLSTSCYLRLVEKGEIFVRREGRLVRVRHVLELSMG 480

Query: 481  DTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLH 540
            DTIYRPLADGDVVLVNRPPSIHQHSLIALSV++LPVSSVLSLNPLCCSPFRGDFDGDCLH
Sbjct: 481  DTIYRPLADGDVVLVNRPPSIHQHSLIALSVRVLPVSSVLSLNPLCCSPFRGDFDGDCLH 540

Query: 541  GYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVPLNLFQMQQ 600
            GYVPQSLEARVE+RELV+LDRQL+NGQSGRNLLSLSHDSLTAAHLIMEDGV LNLFQ+QQ
Sbjct: 541  GYVPQSLEARVELRELVALDRQLVNGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQIQQ 600

Query: 601  LQMLALHQLLPPAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVLIENGELISSEG 660
            LQM ALHQLLPPAI+KAP  R+CAWTGKQLFS  LPPDFDYSSPSH V I+NGEL+SSEG
Sbjct: 601  LQMFALHQLLPPAIVKAPSFRSCAWTGKQLFSIFLPPDFDYSSPSHRVHIKNGELLSSEG 660

Query: 661  SYWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHK 720
            SYWLRD+GRN FQALIEHCEG+TL+YLH AQ VLCEWLSMRGLSVSLSDLYLSVDS+SHK
Sbjct: 661  SYWLRDTGRNPFQALIEHCEGRTLNYLHIAQRVLCEWLSMRGLSVSLSDLYLSVDSHSHK 720

Query: 721  NMMDDIFCGLQEAEETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQKSAALN 780
            NMMDDIFCGLQEAEETCNL QLMVD+HKD+LT DDE NQHVLSI V+ LSYEKQKSAALN
Sbjct: 721  NMMDDIFCGLQEAEETCNLIQLMVDSHKDVLTGDDEGNQHVLSIEVEHLSYEKQKSAALN 780

Query: 781  QASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLS 840
            QASVDAFK+VFR+IQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLS
Sbjct: 781  QASVDAFKRVFREIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLS 840

Query: 841  FSLPHKLTCSAWNSQKMPRYTQKDGLPDRTSSFIPYAVVESSFLSGLNPFECFAHSVTNR 900
            F LPHKL+CS+WNSQKMPRY QKDGL DRT SFIPYAVVE+SFLSGLNPFECFAHSVTNR
Sbjct: 841  FGLPHKLSCSSWNSQKMPRYIQKDGLADRTQSFIPYAVVENSFLSGLNPFECFAHSVTNR 900

Query: 901  DSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSISNELDS 960
            DSSFSDNAEVPGTLTRKLTFLMRDIY AYD TVRNAYGNQLVQFSYD D P S SNELD 
Sbjct: 901  DSSFSDNAEVPGTLTRKLTFLMRDIYNAYDRTVRNAYGNQLVQFSYDTDSPMSTSNELDG 960

Query: 961  ENNNRDHDIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQ 1020
            ENNN + DIGG PVGSLAACA+SEAAYSALDQPISLLE SPLLNLK+VLECGSKRNS KQ
Sbjct: 961  ENNNTNRDIGGQPVGSLAACALSEAAYSALDQPISLLETSPLLNLKKVLECGSKRNSPKQ 1020

Query: 1021 TFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSNVMII---PPG----------- 1080
            TFSLFL EKLSKRSYGFEYGALGVKNHLERV+FKDIVS+VMII    P            
Sbjct: 1021 TFSLFLLEKLSKRSYGFEYGALGVKNHLERVIFKDIVSSVMIIFAPEPSRKRHFSPWVCH 1080

Query: 1081 ----KSILV---LGFATFMYA-----------------------RDCPLADSLREDGDTV 1140
                K IL    L  ++ +++                       +DC LADS REDGDTV
Sbjct: 1081 FHVCKEILKKRRLKISSVIHSLNMRCDSVRQEAKINLPFLHISTQDCSLADSSREDGDTV 1140

Query: 1141 CLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKLRC-NH 1200
            CLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEID+VDI+WNDRPKVPK  C +H
Sbjct: 1141 CLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDKVDISWNDRPKVPKPHCKSH 1200

Query: 1201 GELYLRVTMSGEGNSRFWATLMNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLN 1260
            GELYLRVTMSGEGNSRFWATLMN+CLP+MDLIDWSRSHPDN HS C+AYGIDSG  YFLN
Sbjct: 1201 GELYLRVTMSGEGNSRFWATLMNHCLPIMDLIDWSRSHPDNIHSFCMAYGIDSGRNYFLN 1260

Query: 1261 SLESATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSP 1320
            SLESATLDIGKTIR EHLLLVAN+LSATGEFVGLNVKG+S QREHALVKTPFMQACFSSP
Sbjct: 1261 SLESATLDIGKTIRHEHLLLVANTLSATGEFVGLNVKGVSRQREHALVKTPFMQACFSSP 1320

Query: 1321 GACFVKAAKAGIKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGG 1380
            GA FVKAAKAGIKD+LSGSLDALAWG+IPS+GTGGQFDILYSG+GHELNKPVDVYNLLG 
Sbjct: 1321 GASFVKAAKAGIKDSLSGSLDALAWGKIPSMGTGGQFDILYSGKGHELNKPVDVYNLLGS 1380

Query: 1381 QSICEKQNAKIESLDKNNISEKYSAQLVLKNGGSTIKGLKKLDSVSKSILREFLTLNDIQ 1421
            Q ICEK N KIESLDKN I EKYSA +V KNGGSTIKGLKKLDSVSKSILREFLTLNDIQ
Sbjct: 1381 QGICEKPNVKIESLDKNTIYEKYSA-VVHKNGGSTIKGLKKLDSVSKSILREFLTLNDIQ 1438

[Close]

BLAST of CmUC10G185960 vs. ExPASy TrEMBL
Match: A0A6J1KSL8 (DNA-directed RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111498320 PE=4 SV=1)

HSP 1 Score: 2361.3 bits (6118), Expect = 0.0e+00
Identity = 1203/1497 (80.36%), Postives = 1273/1497 (85.04%), Query Frame = 0


Query: 1    MSSAGDFRPGQKVMIHMDDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASSEVS 60
            M+ AG FR GQK M HM+DEQD EL IPSG++ G+NFSVSTQQD ENIAV+ ++A+ EVS
Sbjct: 1    MNFAGGFRSGQKAMNHMEDEQDSELQIPSGVLVGVNFSVSTQQDMENIAVINIEAACEVS 60

Query: 61   DPKLGLPNPSYQCTTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSI 120
            DPKLGLPNPSYQCTTCGAS LK CEGHFG IKFPYTIIHPYFLSEVAQVLNKVCPGCKSI
Sbjct: 61   DPKLGLPNPSYQCTTCGASVLKCCEGHFGAIKFPYTIIHPYFLSEVAQVLNKVCPGCKSI 120

Query: 121  RQELWGKYPPSECALPLSPPHPLILPLHNQFVFTPLDPTLGLTRGVIHSIKDSPPHGDLF 180
            R+ELWGK                                                     
Sbjct: 121  RRELWGK----------------------------------------------------- 180

Query: 181  EVDYEVEDPTSEYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKY 240
                 VEDPTS++HRPKGCRYCFGSLKDWYPPMRFKLSTTDMF+KSMIMVEVKENMSKKY
Sbjct: 181  -----VEDPTSDFHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFRKSMIMVEVKENMSKKY 240

Query: 241  QKRVAKGGLPSDYWNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAID 300
            QKRVA+GGLP DYWNFIPKDEQQEESYCRPNRK+LTHAQVHYLLKDIDPKFLKKFV A D
Sbjct: 241  QKRVARGGLPPDYWNFIPKDEQQEESYCRPNRKVLTHAQVHYLLKDIDPKFLKKFVSATD 300

Query: 301  SLFLNSFPVTPNSHRVTEMTHSFSNGQRLIF----------------------------- 360
            SLFLNSFPVTPN HRVTEMTHSFS+GQRL+F                             
Sbjct: 301  SLFLNSFPVTPNCHRVTEMTHSFSSGQRLVFDERTRAYKKLVDFRGTANELGSRVLDCLK 360

Query: 361  ---LSPEKLQSKDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELS 420
               LSPEKL+SKDL+YQQKKIKDTATSS GLRWIKDVVLGKRSDHCFRMVVVGDPNIELS
Sbjct: 361  ISKLSPEKLESKDLIYQQKKIKDTATSSNGLRWIKDVVLGKRSDHCFRMVVVGDPNIELS 420

Query: 421  EIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIFVRREGRLVRVRNVLELNMG 480
            EIGIPCHVAERLQISEHLSSWNMKKLSTSCYL LVEKGEIFVRREGRLVRVR+VLEL+MG
Sbjct: 421  EIGIPCHVAERLQISEHLSSWNMKKLSTSCYLRLVEKGEIFVRREGRLVRVRHVLELSMG 480

Query: 481  DTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLH 540
            DTIYRPLADGDVVLVNRPPSIHQHSLIALSV++LPVSSVLSLNPLCCSPFRGDFDGDCLH
Sbjct: 481  DTIYRPLADGDVVLVNRPPSIHQHSLIALSVRVLPVSSVLSLNPLCCSPFRGDFDGDCLH 540

Query: 541  GYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVPLNLFQMQQ 600
            GYVPQSLEARVE+RELV+LDRQL+NGQSGRNLLSLSHDSLTAAHLIMEDGV LNLFQ+QQ
Sbjct: 541  GYVPQSLEARVELRELVALDRQLVNGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQIQQ 600

Query: 601  LQMLALHQLLPPAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVLIENGELISSEG 660
            LQM ALHQLLPPAI+KAP  R+CAWTGKQLFS  LPPDFDYSSPSH V I+NGEL+SSEG
Sbjct: 601  LQMFALHQLLPPAIVKAPSFRSCAWTGKQLFSIFLPPDFDYSSPSHRVHIKNGELLSSEG 660

Query: 661  SYWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHK 720
            SYWLRD+GRN FQALIEHCEG TL+YLH AQ VLCEWLSMRGLSVSLSDLYLSVDS+SHK
Sbjct: 661  SYWLRDTGRNPFQALIEHCEGMTLNYLHIAQRVLCEWLSMRGLSVSLSDLYLSVDSHSHK 720

Query: 721  NMMDDIFCGLQEAEETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQKSAALN 780
            NMMDDIFCGLQEAEETCNL QLMVD+HKD LT DDE NQHVLSI V+ LSYEKQKSAALN
Sbjct: 721  NMMDDIFCGLQEAEETCNLIQLMVDSHKDALTGDDEGNQHVLSIEVEHLSYEKQKSAALN 780

Query: 781  QASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLS 840
            QASVDAFK+VFR+IQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLS
Sbjct: 781  QASVDAFKRVFREIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLS 840

Query: 841  FSLPHKLTCSAWNSQKMPRYTQKDGLPDRTSSFIPYAVVESSFLSGLNPFECFAHSVTNR 900
            F LPHKL+CS+WNSQKMPRY +KDGL DRT SFIPYAVVE+SFLSGLNPFECFAHSVTNR
Sbjct: 841  FGLPHKLSCSSWNSQKMPRYIRKDGLADRTQSFIPYAVVENSFLSGLNPFECFAHSVTNR 900

Query: 901  DSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSISNELDS 960
            DSSFSDNAEVPGTLTRKLTFLMRDIY AYDGTVRNAYGNQLVQFSYD D PTSISNELD 
Sbjct: 901  DSSFSDNAEVPGTLTRKLTFLMRDIYNAYDGTVRNAYGNQLVQFSYDTDSPTSISNELDG 960

Query: 961  ENNNRDHDIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQ 1020
            ENNN + DIGG PVGSLAACA+SEAAYSALDQPISLLE SPLLNLK+VLECGSKRNS KQ
Sbjct: 961  ENNNTNRDIGGQPVGSLAACAISEAAYSALDQPISLLETSPLLNLKKVLECGSKRNSPKQ 1020

Query: 1021 TFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSNVMII---PPG----------- 1080
             FSLFL EKLSKRSYG+EYGALGVKNHLERV+FKDIVS+VMII    P            
Sbjct: 1021 IFSLFLLEKLSKRSYGYEYGALGVKNHLERVIFKDIVSSVMIIFAPEPSRKRHFSPWVCH 1080

Query: 1081 ----KSILV---LGFATFMYA-----------------------RDCPLADSLREDGDTV 1140
                K IL    L  ++ +++                       +DC LADS REDGDTV
Sbjct: 1081 FHVCKEILKKRRLKISSVIHSLNMRCDSMRQEAKINLPFLHISTQDCSLADSSREDGDTV 1140

Query: 1141 CLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKLRC-NH 1200
            CLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEID+VDI+WNDRPKVPK  C +H
Sbjct: 1141 CLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDKVDISWNDRPKVPKPHCKSH 1200

Query: 1201 GELYLRVTMSGEGNSRFWATLMNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLN 1260
            GELYLRVTMSGEGNSRFWATLMNNCLP+MDLIDWSRSHPDN HS C+AYGIDSG  YFLN
Sbjct: 1201 GELYLRVTMSGEGNSRFWATLMNNCLPIMDLIDWSRSHPDNIHSFCMAYGIDSGRNYFLN 1260

Query: 1261 SLESATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSP 1320
            SLESATLDIGKTIR EHLLLVAN+LSATGEFVGLNVKG+S QREHALVKTPFMQACFSSP
Sbjct: 1261 SLESATLDIGKTIRHEHLLLVANTLSATGEFVGLNVKGVSRQREHALVKTPFMQACFSSP 1320

Query: 1321 GACFVKAAKAGIKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGG 1380
            GA FVKAAKAGIKD+LSGSLDALAWG+IPS+GTGGQFDILYSG+GHEL+KPVDVYNLLG 
Sbjct: 1321 GASFVKAAKAGIKDSLSGSLDALAWGKIPSMGTGGQFDILYSGKGHELSKPVDVYNLLGS 1380

Query: 1381 QSICEKQNAKIESLDKNNISEKYSAQLVLKNGGSTIKGLKKLDSVSKSILREFLTLNDIQ 1421
            Q ICEK N K+ESLDKN I EKYSA +V KNGGSTIKGLKKLDSVSKSILREFLTLNDIQ
Sbjct: 1381 QGICEKPNVKMESLDKNTIYEKYSA-VVHKNGGSTIKGLKKLDSVSKSILREFLTLNDIQ 1438

[Close]

BLAST of CmUC10G185960 vs. TAIR 10
Match: AT1G63020.1 (nuclear RNA polymerase D1A )

HSP 1 Score: 1281.5 bits (3315), Expect = 0.0e+00
Identity = 711/1506 (47.21%), Postives = 935/1506 (62.08%), Query Frame = 0


Query: 17   MDDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASSEVSDPKLGLPNPSYQCTTC 76
            M+D+ + EL +P G +T I FS+S   D + ++V+ V+A ++V+D +LGLPNP   C TC
Sbjct: 1    MEDDCE-ELQVPVGTLTSIGFSISNNNDRDKMSVLEVEAPNQVTDSRLGLPNPDSVCRTC 60

Query: 77   GASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKYPPSECALP 136
            G+   K CEGHFGVI F Y+II+PYFL EVA +LNK+CPGCK IR++             
Sbjct: 61   GSKDRKVCEGHFGVINFAYSIINPYFLKEVAALLNKICPGCKYIRKK------------- 120

Query: 137  LSPPHPLILPLHNQFVFTPLDPTLGLTRGVIHSIKDSPPHGDLFEVDYEVEDPTSEYHRP 196
                         QF  T                                ED      +P
Sbjct: 121  -------------QFQIT--------------------------------ED------QP 180

Query: 197  KGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLPSDYWNF 256
            + CRYC  +L   YP M+F+++T ++F++S I+VEV E    K +KR     LP DYW+F
Sbjct: 181  ERCRYC--TLNTGYPLMKFRVTTKEVFRRSGIVVEVNEESLMKLKKRGVL-TLPPDYWSF 240

Query: 257  IPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTPNSHRV 316
            +P+D   +ES  +P R+I+THAQV+ LL  ID + +KK +P  +SL L SFPVTPN +RV
Sbjct: 241  LPQDSNIDESCLKPTRRIITHAQVYALLLGIDQRLIKKDIPMFNSLGLTSFPVTPNGYRV 300

Query: 317  TEMTHSFSNGQRLIFLSPEKLQSK----------------DLVYQQKKIKDTATSS---- 376
            TE+ H F NG RLIF    ++  K                + +   +   +T +SS    
Sbjct: 301  TEIVHQF-NGARLIFDERTRIYKKLVGFEGNTLELSSRVMECMQYSRLFSETVSSSKDSA 360

Query: 377  ------------YGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISE 436
                         GLR++KDV+LGKRSDH FR VVVGDP+++L+EIGIP  +A+RLQ+SE
Sbjct: 361  NPYQKKSDTPKLCGLRFMKDVLLGKRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQVSE 420

Query: 437  HLSSWNMKKLSTSCYLHLVEKGEIFVRREGRLVRVRNVLELNMGDTIYRPLADGDVVLVN 496
            HL+  N ++L TS    L++  E+ VRR  RLV ++ V +L  GD I+R L DGD VL+N
Sbjct: 421  HLNQCNKERLVTSFVPTLLDNKEMHVRRGDRLVAIQ-VNDLQTGDKIFRSLMDGDTVLMN 480

Query: 497  RPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVREL 556
            RPPSIHQHSLIA++V++LP +SV+SLNP+CC PFRGDFDGDCLHGYVPQS++A+VE+ EL
Sbjct: 481  RPPSIHQHSLIAMTVRILPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELDEL 540

Query: 557  VSLDRQLINGQSGRNLLSLSHDSLTAAHLI-MEDGVPLNLFQMQQLQMLALHQLLPPAIL 616
            V+LD+QLIN Q+GRNLLSL  DSLTAA+L+ +E    LN  QMQQLQM    QL PPAI+
Sbjct: 541  VALDKQLINRQNGRNLLSLGQDSLTAAYLVNVEKNCYLNRAQMQQLQMYCPFQLPPPAII 600

Query: 617  KA-PLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVLIENGELIS-SEGSYWLRDSGRNLFQ 676
            KA P      WTG QLF  L PP FDY+ P + V++ NGEL+S SEGS WLRD   N  +
Sbjct: 601  KASPSSTEPQWTGMQLFGMLFPPGFDYTYPLNNVVVSNGELLSFSEGSAWLRDGEGNFIE 660

Query: 677  ALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQEA 736
             L++H +GK LD ++ AQ +L +WL MRGLSVSL+DLYLS D  S KN+ ++I  GL+EA
Sbjct: 661  RLLKHDKGKVLDIIYSAQEMLSQWLLMRGLSVSLADLYLSSDLQSRKNLTEEISYGLREA 720

Query: 737  EETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQKSAALNQASVDAFKKVFRD 796
            E+ CN +QLMV++ +D L  + ED +      + R  YE+QKSA L++ +V AFK  +RD
Sbjct: 721  EQVCNKQQLMVESWRDFLAVNGEDKEEDSVSDLARFCYERQKSATLSELAVSAFKDAYRD 780

Query: 797  IQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFSLPHKLTCSAWN 856
            +Q L Y+Y  + NS L M KAGSKGN+ KLVQHSMC+GLQ+S V+LSF  P +LTC+AWN
Sbjct: 781  VQALAYRYGDQSNSFLIMSKAGSKGNIGKLVQHSMCIGLQNSAVSLSFGFPRELTCAAWN 840

Query: 857  SQKMPRYTQKDGLPDRTSSFIPYAVVESSFLSGLNPFECFAHSVTNRDSSFSDNAEVPGT 916
                P    K      T S++PY V+E+SFL+GLNP E F HSVT+RDSSFS NA++PGT
Sbjct: 841  DPNSPLRGAKGKDSTTTESYVPYGVIENSFLTGLNPLESFVHSVTSRDSSFSGNADLPGT 900

Query: 917  LTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSISNELDSENNNRDHDIGGHP 976
            L+R+L F MRDIY AYDGTVRN++GNQLVQF+Y+ D P                DI G  
Sbjct: 901  LSRRLMFFMRDIYAAYDGTVRNSFGNQLVQFTYETDGPV--------------EDITGEA 960

Query: 977  VGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLSKR 1036
            +GSL+ACA+SEAAYSALDQPISLLE SPLLNLK VLECGSK+   +QT SL+LSE LSK+
Sbjct: 961  LGSLSACALSEAAYSALDQPISLLETSPLLNLKNVLECGSKKGQREQTMSLYLSEYLSKK 1020

Query: 1037 SYGFEYGALGVKNHLERVMFKDIVSNVMIIPPGKSILVLGFATFM--------------- 1096
             +GFEYG+L +KNHLE++ F +IVS  MII    S   +  + ++               
Sbjct: 1021 KHGFEYGSLEIKNHLEKLSFSEIVSTSMIIFSPSSNTKVPLSPWVCHFHISEKVLKRKQL 1080

Query: 1097 ------------------------------YARDCPLADSLREDGDTVCLTVTIAENTKN 1156
                                              C   D   +D D VC+TVT+ E +K+
Sbjct: 1081 SAESVVSSLNEQYKSRNRELKLDIVDLDIQNTNHCSSDDQAMKD-DNVCITVTVVEASKH 1140

Query: 1157 SFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKLRCNH--GELYLRVTMSG 1216
            S L+LD I+ +LI FLL + ++G   I +V+I W DRPK PK   NH  GELYL+VTM G
Sbjct: 1141 SVLELDAIRLVLIPFLLDSPVKGDQGIKKVNILWTDRPKAPKRNGNHLAGELYLKVTMYG 1200

Query: 1217 E-GNSRFWATLMNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDIG 1276
            + G    W  L+  CLP+MD+IDW RSHPDN    C  YGID+G   F+ +LESA  D G
Sbjct: 1201 DRGKRNCWTALLETCLPIMDMIDWGRSHPDNIRQCCSVYGIDAGRSIFVANLESAVSDTG 1260

Query: 1277 KTIRLEHLLLVANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPGACFVKAAKA 1336
            K I  EHLLLVA+SLS TGEFV LN KG S QR+      PF QACFSSP  CF+KAAK 
Sbjct: 1261 KEILREHLLLVADSLSVTGEFVALNAKGWSKQRQVESTPAPFTQACFSSPSQCFLKAAKE 1320

Query: 1337 GIKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQSICEKQNAK 1396
            G++D+L GS+DALAWG++P  GTG QF+I+ S + H    PVDVY+LL       + N+ 
Sbjct: 1321 GVRDDLQGSIDALAWGKVPGFGTGDQFEIIISPKVHGFTTPVDVYDLLSSTKTMRRTNSA 1380

Query: 1397 IESLDKNNISEKYSAQLVLKNGGSTIKGLKKLD--SVSKSILREFLTLNDIQKLSFALRT 1438
             +       S+K + Q       + +K +K LD   +  S+LR   T  +I+ LS +L+ 
Sbjct: 1381 PK-------SDKATVQPFGLLHSAFLKDIKVLDGKGIPMSLLRTIFTWKNIELLSQSLKR 1414

[Close]

BLAST of CmUC10G185960 vs. TAIR 10
Match: AT1G63020.2 (nuclear RNA polymerase D1A )

HSP 1 Score: 1281.5 bits (3315), Expect = 0.0e+00
Identity = 711/1506 (47.21%), Postives = 935/1506 (62.08%), Query Frame = 0


Query: 17   MDDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASSEVSDPKLGLPNPSYQCTTC 76
            M+D+ + EL +P G +T I FS+S   D + ++V+ V+A ++V+D +LGLPNP   C TC
Sbjct: 1    MEDDCE-ELQVPVGTLTSIGFSISNNNDRDKMSVLEVEAPNQVTDSRLGLPNPDSVCRTC 60

Query: 77   GASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKYPPSECALP 136
            G+   K CEGHFGVI F Y+II+PYFL EVA +LNK+CPGCK IR++             
Sbjct: 61   GSKDRKVCEGHFGVINFAYSIINPYFLKEVAALLNKICPGCKYIRKK------------- 120

Query: 137  LSPPHPLILPLHNQFVFTPLDPTLGLTRGVIHSIKDSPPHGDLFEVDYEVEDPTSEYHRP 196
                         QF  T                                ED      +P
Sbjct: 121  -------------QFQIT--------------------------------ED------QP 180

Query: 197  KGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLPSDYWNF 256
            + CRYC  +L   YP M+F+++T ++F++S I+VEV E    K +KR     LP DYW+F
Sbjct: 181  ERCRYC--TLNTGYPLMKFRVTTKEVFRRSGIVVEVNEESLMKLKKRGVL-TLPPDYWSF 240

Query: 257  IPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTPNSHRV 316
            +P+D   +ES  +P R+I+THAQV+ LL  ID + +KK +P  +SL L SFPVTPN +RV
Sbjct: 241  LPQDSNIDESCLKPTRRIITHAQVYALLLGIDQRLIKKDIPMFNSLGLTSFPVTPNGYRV 300

Query: 317  TEMTHSFSNGQRLIFLSPEKLQSK----------------DLVYQQKKIKDTATSS---- 376
            TE+ H F NG RLIF    ++  K                + +   +   +T +SS    
Sbjct: 301  TEIVHQF-NGARLIFDERTRIYKKLVGFEGNTLELSSRVMECMQYSRLFSETVSSSKDSA 360

Query: 377  ------------YGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISE 436
                         GLR++KDV+LGKRSDH FR VVVGDP+++L+EIGIP  +A+RLQ+SE
Sbjct: 361  NPYQKKSDTPKLCGLRFMKDVLLGKRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQVSE 420

Query: 437  HLSSWNMKKLSTSCYLHLVEKGEIFVRREGRLVRVRNVLELNMGDTIYRPLADGDVVLVN 496
            HL+  N ++L TS    L++  E+ VRR  RLV ++ V +L  GD I+R L DGD VL+N
Sbjct: 421  HLNQCNKERLVTSFVPTLLDNKEMHVRRGDRLVAIQ-VNDLQTGDKIFRSLMDGDTVLMN 480

Query: 497  RPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVREL 556
            RPPSIHQHSLIA++V++LP +SV+SLNP+CC PFRGDFDGDCLHGYVPQS++A+VE+ EL
Sbjct: 481  RPPSIHQHSLIAMTVRILPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELDEL 540

Query: 557  VSLDRQLINGQSGRNLLSLSHDSLTAAHLI-MEDGVPLNLFQMQQLQMLALHQLLPPAIL 616
            V+LD+QLIN Q+GRNLLSL  DSLTAA+L+ +E    LN  QMQQLQM    QL PPAI+
Sbjct: 541  VALDKQLINRQNGRNLLSLGQDSLTAAYLVNVEKNCYLNRAQMQQLQMYCPFQLPPPAII 600

Query: 617  KA-PLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVLIENGELIS-SEGSYWLRDSGRNLFQ 676
            KA P      WTG QLF  L PP FDY+ P + V++ NGEL+S SEGS WLRD   N  +
Sbjct: 601  KASPSSTEPQWTGMQLFGMLFPPGFDYTYPLNNVVVSNGELLSFSEGSAWLRDGEGNFIE 660

Query: 677  ALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQEA 736
             L++H +GK LD ++ AQ +L +WL MRGLSVSL+DLYLS D  S KN+ ++I  GL+EA
Sbjct: 661  RLLKHDKGKVLDIIYSAQEMLSQWLLMRGLSVSLADLYLSSDLQSRKNLTEEISYGLREA 720

Query: 737  EETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQKSAALNQASVDAFKKVFRD 796
            E+ CN +QLMV++ +D L  + ED +      + R  YE+QKSA L++ +V AFK  +RD
Sbjct: 721  EQVCNKQQLMVESWRDFLAVNGEDKEEDSVSDLARFCYERQKSATLSELAVSAFKDAYRD 780

Query: 797  IQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFSLPHKLTCSAWN 856
            +Q L Y+Y  + NS L M KAGSKGN+ KLVQHSMC+GLQ+S V+LSF  P +LTC+AWN
Sbjct: 781  VQALAYRYGDQSNSFLIMSKAGSKGNIGKLVQHSMCIGLQNSAVSLSFGFPRELTCAAWN 840

Query: 857  SQKMPRYTQKDGLPDRTSSFIPYAVVESSFLSGLNPFECFAHSVTNRDSSFSDNAEVPGT 916
                P    K      T S++PY V+E+SFL+GLNP E F HSVT+RDSSFS NA++PGT
Sbjct: 841  DPNSPLRGAKGKDSTTTESYVPYGVIENSFLTGLNPLESFVHSVTSRDSSFSGNADLPGT 900

Query: 917  LTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSISNELDSENNNRDHDIGGHP 976
            L+R+L F MRDIY AYDGTVRN++GNQLVQF+Y+ D P                DI G  
Sbjct: 901  LSRRLMFFMRDIYAAYDGTVRNSFGNQLVQFTYETDGPV--------------EDITGEA 960

Query: 977  VGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLSKR 1036
            +GSL+ACA+SEAAYSALDQPISLLE SPLLNLK VLECGSK+   +QT SL+LSE LSK+
Sbjct: 961  LGSLSACALSEAAYSALDQPISLLETSPLLNLKNVLECGSKKGQREQTMSLYLSEYLSKK 1020

Query: 1037 SYGFEYGALGVKNHLERVMFKDIVSNVMIIPPGKSILVLGFATFM--------------- 1096
             +GFEYG+L +KNHLE++ F +IVS  MII    S   +  + ++               
Sbjct: 1021 KHGFEYGSLEIKNHLEKLSFSEIVSTSMIIFSPSSNTKVPLSPWVCHFHISEKVLKRKQL 1080

Query: 1097 ------------------------------YARDCPLADSLREDGDTVCLTVTIAENTKN 1156
                                              C   D   +D D VC+TVT+ E +K+
Sbjct: 1081 SAESVVSSLNEQYKSRNRELKLDIVDLDIQNTNHCSSDDQAMKD-DNVCITVTVVEASKH 1140

Query: 1157 SFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKLRCNH--GELYLRVTMSG 1216
            S L+LD I+ +LI FLL + ++G   I +V+I W DRPK PK   NH  GELYL+VTM G
Sbjct: 1141 SVLELDAIRLVLIPFLLDSPVKGDQGIKKVNILWTDRPKAPKRNGNHLAGELYLKVTMYG 1200

Query: 1217 E-GNSRFWATLMNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDIG 1276
            + G    W  L+  CLP+MD+IDW RSHPDN    C  YGID+G   F+ +LESA  D G
Sbjct: 1201 DRGKRNCWTALLETCLPIMDMIDWGRSHPDNIRQCCSVYGIDAGRSIFVANLESAVSDTG 1260

Query: 1277 KTIRLEHLLLVANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPGACFVKAAKA 1336
            K I  EHLLLVA+SLS TGEFV LN KG S QR+      PF QACFSSP  CF+KAAK 
Sbjct: 1261 KEILREHLLLVADSLSVTGEFVALNAKGWSKQRQVESTPAPFTQACFSSPSQCFLKAAKE 1320

Query: 1337 GIKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQSICEKQNAK 1396
            G++D+L GS+DALAWG++P  GTG QF+I+ S + H    PVDVY+LL       + N+ 
Sbjct: 1321 GVRDDLQGSIDALAWGKVPGFGTGDQFEIIISPKVHGFTTPVDVYDLLSSTKTMRRTNSA 1380

Query: 1397 IESLDKNNISEKYSAQLVLKNGGSTIKGLKKLD--SVSKSILREFLTLNDIQKLSFALRT 1438
             +       S+K + Q       + +K +K LD   +  S+LR   T  +I+ LS +L+ 
Sbjct: 1381 PK-------SDKATVQPFGLLHSAFLKDIKVLDGKGIPMSLLRTIFTWKNIELLSQSLKR 1414

[Close]

BLAST of CmUC10G185960 vs. TAIR 10
Match: AT2G40030.1 (nuclear RNA polymerase D1B )

HSP 1 Score: 360.1 bits (923), Expect = 8.4e-99
Identity = 364/1385 (26.28%), Postives = 589/1385 (42.53%), Query Frame = 0


Query: 20   EQDGELPIPSGLVTGINFSVSTQQD--TENIAVMTVDASSEVSDPKLGLPNPSYQCTTCG 79
            E++    I  G + GI F++++  +   ++I+   ++  S++++  LGLP    +C +CG
Sbjct: 2    EEESTSEILDGEIVGITFALASHHEICIQSISESAINHPSQLTNAFLGLPLEFGKCESCG 61

Query: 80   ASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKYPPSECALPL 139
            A+    CEGHFG I+ P  I HP  ++E+ Q+L+ +C  C  I++    K      A   
Sbjct: 62   ATEPDKCEGHFGYIQLPVPIYHPAHVNELKQMLSLLCLKCLKIKK---AKGTSGGLA--- 121

Query: 140  SPPHPLILPLHNQFVFTPLDPTLGL--TRGVIHSIKDSPPHGDLFEVDYEVEDPTSEYHR 199
                               D  LG+        SIKD    G  +    E++ P+    +
Sbjct: 122  -------------------DRLLGVCCEEASQISIKDRASDGASY---LELKLPSRSRLQ 181

Query: 200  PKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENM----SKKYQKRVAKGGLPS 259
            P GC         W    R+       + + ++  EVKE +     +  +K  AKG +P 
Sbjct: 182  P-GC---------WNFLERYGYRYGSDYTRPLLAREVKEILRRIPEESRKKLTAKGHIPQ 241

Query: 260  DYW--NFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDP-----KFLKKFVPAIDSLFL 319
            + +   ++P           PN   +  A   +    +DP     K + K V AI S   
Sbjct: 242  EGYILEYLP---------VPPNCLSVPEASDGFSTMSVDPSRIELKDVLKKVIAIKSSRS 301

Query: 320  NSFPVTPNSHRVTEMTHSFSNGQRLIFLSPEKLQSKDLVYQQKKIKDTATSSYGLRWIKD 379
                   +    +EM        + +  + +  ++ D+ Y   KI D+++S      ++ 
Sbjct: 302  GETNFESHKAEASEMFRVVDTYLQ-VRGTAKAARNIDMRYGVSKISDSSSSKAWTEKMRT 361

Query: 380  VVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWN----MKKLSTSCYL 439
            + + K S    R V+ GD    ++E+GIP  +A+R+   E +S  N     K +     L
Sbjct: 362  LFIRKGSGFSSRSVITGDAYRHVNEVGIPIEIAQRITFEERVSVHNRGYLQKLVDDKLCL 421

Query: 440  HLVEKGEIFVRREGRLVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVK 499
               +    +  R+G     +   EL  G  ++R + DGDVV +NRPP+ H+HSL AL V 
Sbjct: 422  SYTQGSTTYSLRDGS----KGHTELKPGQVVHRRVMDGDVVFINRPPTTHKHSLQALRV- 481

Query: 500  LLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNL 559
             +   + + +NPL CSP   DFDGDC+H + PQSL A+ EV EL S+++QL++  +G+ +
Sbjct: 482  YVHEDNTVKINPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELFSVEKQLLSSHTGQLI 541

Query: 560  LSLSHDSLTAAHLIMEDGVPLNLFQMQQLQMLALHQLLPPAILKAPLLRNCAWTGKQLFS 619
            L +  DSL +  +++E  V L+    QQL M     L PPA+ K+      AWT  Q+  
Sbjct: 542  LQMGSDSLLSLRVMLE-RVFLDKATAQQLAMYGSLSLPPPALRKSS-KSGPAWTVFQILQ 601

Query: 620  TLLPPDFDYSSPSHCVLIENGELISSEGSYWLRDSGRN--LFQALIEHCEGKTLDYLHDA 679
               P     S      L++  +L+  +       S  N  +    +E    +TL +    
Sbjct: 602  LAFPERL--SCKGDRFLVDGSDLLKFDFGVDAMGSIINEIVTSIFLEKGPKETLGFFDSL 661

Query: 680  QGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQEAEETCNLKQLMVDAHKDI 739
            Q +L E L   G S+SL DL     S S  +M  D+   L   E +  + +L +    ++
Sbjct: 662  QPLLMESLFAEGFSLSLEDL-----SMSRADM--DVIHNLIIREISPMVSRLRLSYRDEL 721

Query: 740  LTEDDEDNQHVLSIAVDRLSYEKQKSAALNQASVDAFKKVFRDIQNLVYKYSGKDNSLLT 799
              E+               S  K K  A N      F      I+NL+     K NS +T
Sbjct: 722  QLEN---------------SIHKVKEVAAN------FMLKSYSIRNLI---DIKSNSAIT 781

Query: 800  MFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFSLPHKLTCSAWNSQKMPRYTQKDGLPDRT 859
                       KLVQ +  LGLQ S     ++       + +  +K            R 
Sbjct: 782  -----------KLVQQTGFLGLQLSDKKKFYTKTLVEDMAIFCKRKY----------GRI 841

Query: 860  SSFIPYAVVESSFLSGLNPFECFAHSVTNRD--SSFSDNAEVPGTLTRKLTFLMRDIYTA 919
            SS   + +V+  F  GL+P+E  AHS+  R+     S     PGTL + L  ++RDI   
Sbjct: 842  SSSGDFGIVKGCFFHGLDPYEEMAHSIAAREVIVRSSRGLAEPGTLFKNLMAVLRDIVIT 901

Query: 920  YDGTVRNAYGNQLVQFSYDIDRPTSISNELDSENNNRDHDIGGHPVGSLAACAMSEAAYS 979
             DGTVRN   N ++QF Y +          DSE  ++     G PVG LAA AMS  AY 
Sbjct: 902  NDGTVRNTCSNSVIQFKYGV----------DSERGHQGLFEAGEPVGVLAATAMSNPAYK 961

Query: 980  ALDQPISLLEASPLLN-----LKRVLEC--GSKRNSTKQTFSLFLSEKLSKRSYGFEYGA 1039
            A      +L++SP  N     +K VL C    +  +  +   L+L+E    + +  E  A
Sbjct: 962  A------VLDSSPNSNSSWELMKEVLLCKVNFQNTTNDRRVILYLNECHCGKRFCQENAA 1021

Query: 1040 LGVKNHLERVMFKDIVSNVMI---------------------IPPGKSIL---------- 1099
              V+N L +V  KD     ++                     I   K++L          
Sbjct: 1022 CTVRNKLNKVSLKDTAVEFLVEYRKQPTISEIFGIDSCLHGHIHLNKTLLQDWNISMQDI 1081

Query: 1100 ---------VLGFATFMYARD------------CPLADSLREDG-DTVCLTVTIAENTKN 1159
                      LG      A D            C   D     G D  CLT +      +
Sbjct: 1082 HQKCEDVINSLGQKKKKKATDDFKRTSLSVSECCSFRDPCGSKGSDMPCLTFSYNATDPD 1141

Query: 1160 SFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKLRCNH----GELYLRVTM 1219
                LD + + +   LL  VI+G + I   +I WN       +R  H    GE  L VT+
Sbjct: 1142 LERTLDVLCNTVYPVLLEIVIKGDSRICSANIIWNSSDMTTWIRNRHASRRGEWVLDVTV 1201

Query: 1220 SGEG---NSRFWATLMNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLESAT 1279
                   +   W  ++++CL V+ LID  RS P +   +    G+   ++  +  L ++ 
Sbjct: 1202 EKSAVKQSGDAWRVVIDSCLSVLHLIDTKRSIPYSVKQVQELLGLSCAFEQAVQRLSASV 1259

Query: 1280 LDIGKTIRLEHLLLVANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPGACFVK 1313
              + K +  EH++L+AN+++ +G  +G N  G         +K PF +A   +P  CF K
Sbjct: 1262 RMVSKGVLKEHIILLANNMTCSGTMLGFNSGGYKALTRSLNIKAPFTEATLIAPRKCFEK 1259

[Close]

BLAST of CmUC10G185960 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 177.2 bits (448), Expect = 1.0e-43
Identity = 162/607 (26.69%), Postives = 279/607 (45.96%), Query Frame = 0


Query: 362 IKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLH 421
           I+  ++GKR D   R V+  DP I + E+G+P  +A  L   E ++ +N+++L       
Sbjct: 347 IRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLK-----E 406

Query: 422 LVEKG----------EIFVRREGRLVRVRNVLE-----LNMGDTIYRPLADGDVVLVNRP 481
           LV+ G          +  +R +G+ + +R + +     L +G  + R L DGD VL NR 
Sbjct: 407 LVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQ 466

Query: 482 PSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVS 541
           PS+H+ S++   ++++P S+   LN    SP+  DFDGD ++ +VPQS E R EV EL+ 
Sbjct: 467 PSLHKMSIMGHRIRIMPYST-FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMM 526

Query: 542 LDRQLINGQSGRNLLSLSHDSLTAAHLI--MEDGVPLNLFQMQQLQMLALHQLLP-PAIL 601
           + + +++ Q+ R ++ +  D+L     I   +  +  ++F    +        +P PAIL
Sbjct: 527 VPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAIL 586

Query: 602 KAPLLRNCAWTGKQLFSTLLPPDFD--------------YSSPSHC-VLIENGELISSE- 661
           K   L    WTGKQ+F+ ++P   +              + +P    V IE GEL++   
Sbjct: 587 KPRPL----WTGKQVFNLIIPKQINLLRYSAWHADTETGFITPGDTQVRIERGELLAGTL 646

Query: 662 GSYWLRDSGRNLFQALIEHC-EGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYS 721
               L  S  +L   + E         +L   Q ++  WL   G ++ +       D+ +
Sbjct: 647 CKKTLGTSNGSLVHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFTIGIG------DTIA 706

Query: 722 HKNMMDDIFCGLQEAEETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQKSAA 781
             + M+ I       E   N K     A KD++ +              R ++E + +  
Sbjct: 707 DSSTMEKI------NETISNAK----TAVKDLIRQFQGKELDPEPGRTMRDTFENRVNQV 766

Query: 782 LNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVT 841
           LN+A  DA     + +         + N+L  M  AGSKG+ + + Q + C+G Q     
Sbjct: 767 LNKARDDAGSSAQKSL--------AETNNLKAMVTAGSKGSFINISQMTACVGQQ----- 826

Query: 842 LSFSLPHKLTCSAWNSQKMPRYTQKDGLPDRTSSFIPYAVVESSFLSGLNPFECFAHSVT 901
              ++  K     ++ + +P +T+ D  P+          VE+S+L GL P E F H++ 
Sbjct: 827 ---NVEGKRIPFGFDGRTLPHFTKDDYGPESR------GFVENSYLRGLTPQEFFFHAMG 886

Query: 902 NRDSSFSDNAEV--PGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSI-- 929
            R+       +    G + R+L   M DI   YDGTVRN+ G+ ++QF Y  D   ++  
Sbjct: 887 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMDAVWI 904

[Close]

BLAST of CmUC10G185960 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 141.7 bits (356), Expect = 4.7e-33
Identity = 165/600 (27.50%), Postives = 254/600 (42.33%), Query Frame = 0


Query: 368 GKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEK-- 427
           GKR +   R V+  DPN++++E+GIP  +A+ L   E +S  N++KL   C  +   K  
Sbjct: 359 GKRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKL-RQCVRNGPNKYP 418

Query: 428 GEIFVR----REGRLV---RVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALS 487
           G   VR        LV   R R   EL +G  + R L +GDVVL NR PS+H+ S++   
Sbjct: 419 GARNVRYPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHR 478

Query: 488 VKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGR 547
            +++P  + L  N   C+P+  DFDGD ++ +VPQ+ EAR E   L+ +   L   ++G 
Sbjct: 479 ARIMPWRT-LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGE 538

Query: 548 NLLSLSHDSLTAAHLIME-----DGVPLNLFQMQQLQMLALHQLLPPAILKAPLLRNCAW 607
            L++ + D LT++ LI       D    +L        +    L  P ILK   L    W
Sbjct: 539 ILVASTQDFLTSSFLITRKDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIEL----W 598

Query: 608 TGKQLFSTLLPP-------------DFDYSSPSH-----------CVLIENGELISSE-G 667
           TGKQ+FS LL P             + ++    H            V   N ELIS + G
Sbjct: 599 TGKQIFSVLLRPNASIRVYVTLNVKEKNFKKGEHGFDETMCINDGWVYFRNSELISGQLG 658

Query: 668 SYWLRDSGRN-LFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSH 727
              L +  ++ L+  L+        DY   A  V    L+       LS  ++ +  +S 
Sbjct: 659 KATLGNGNKDGLYSILLR-------DYNSHAAAVCMNRLA------KLSARWIGIHGFSI 718

Query: 728 KNMMDDIFCGLQEAEETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQKSAAL 787
              +DD+  G + ++E  +  Q   D     + E +  N  + +      S E + +  L
Sbjct: 719 G--IDDVQPGEELSKERKDSIQFGYDQCHRKIEEFNRGNLQLKAGLDGAKSLEAEITGIL 778

Query: 788 NQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTL 847
           N       K     +           NS L M + GSKG+ + + Q   C+G Q      
Sbjct: 779 NTIREATGKACMSGLH--------WRNSPLIMSQCGSKGSPINISQMVACVGQQ------ 838

Query: 848 SFSLPHKLTCSAWNSQKMPRYTQKDGLPDRTSSFIP--------YAVVESSFLSGLNPFE 907
                        N  + P     DG  DR+    P           V +SF SGL   E
Sbjct: 839 -----------TVNGHRAP-----DGFIDRSLPHFPRMSKSPAAKGFVANSFYSGLTATE 898

Query: 908 CFAHSVTNRDSSFSDNAEVPGT--LTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDID 918
            F H++  R+       +   T  ++R+L   + D+   YD TVRNA G  ++QF+Y  D
Sbjct: 899 FFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNASG-CILQFTYGDD 906

The following BLAST results are available for this feature:

BLAST of CmUC10G185960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905038.1	0.0e+00	86.49	DNA-directed RNA polymerase IV subunit 1 isoform X1 [Benincasa hispida] >XP_0389...	[more]
XP_038905045.1	0.0e+00	86.49	DNA-directed RNA polymerase IV subunit 1 isoform X4 [Benincasa hispida]	[more]
XP_038905042.1	0.0e+00	86.58	DNA-directed RNA polymerase IV subunit 1 isoform X2 [Benincasa hispida]	[more]
TYK19428.1	0.0e+00	85.48	DNA-directed RNA polymerase IV subunit 1 [Cucumis melo var. makuwa]	[more]
XP_011650447.1	0.0e+00	84.74	DNA-directed RNA polymerase IV subunit 1 isoform X1 [Cucumis sativus] >XP_011650...	[more]

BLAST of CmUC10G185960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LQ02	0.0e+00	47.21	DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPD...	[more]
Q5D869	1.2e-97	26.28	DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1...	[more]
P36594	1.5e-52	24.17	DNA-directed RNA polymerase II subunit rpb1 OS=Schizosaccharomyces pombe (strain...	[more]
P35084	7.1e-50	24.58	DNA-directed RNA polymerase II subunit rpb1 OS=Dictyostelium discoideum OX=44689...	[more]
P17546	9.5e-47	27.26	DNA-directed RNA polymerase II subunit RPB1-A OS=Trypanosoma brucei brucei OX=57...	[more]

BLAST of CmUC10G185960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D780	0.0e+00	85.48	DNA-directed RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A0A0L2L4	0.0e+00	84.74	DNA-directed RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_3G039340 PE=4 SV=1	[more]
A0A1S4DY39	0.0e+00	84.18	DNA-directed RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103490982 PE=4 SV=1	[more]
A0A6J1FKU9	0.0e+00	80.43	DNA-directed RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111444908 PE=4 S...	[more]
A0A6J1KSL8	0.0e+00	80.36	DNA-directed RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111498320 PE=4 SV=...	[more]

BLAST of CmUC10G185960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G63020.1	0.0e+00	47.21	nuclear RNA polymerase D1A	[more]
AT1G63020.2	0.0e+00	47.21	nuclear RNA polymerase D1A	[more]
AT2G40030.1	8.4e-99	26.28	nuclear RNA polymerase D1B	[more]
AT4G35800.1	1.0e-43	26.69	RNA polymerase II large subunit	[more]
AT5G60040.1	4.7e-33	27.50	nuclear RNA polymerase C1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006592	RNA polymerase, N-terminal	SMART	SM00663	rpolaneu7	coord: 300..555 e-value: 1.9E-26 score: 103.8
None	No IPR available	GENE3D	3.10.450.40		coord: 1354..1421 e-value: 1.1E-7 score: 34.1
None	No IPR available	PFAM	PF11523	DUF3223	coord: 1371..1415 e-value: 6.6E-7 score: 29.9
None	No IPR available	GENE3D	2.40.40.20		coord: 363..534 e-value: 1.9E-41 score: 144.0
None	No IPR available	GENE3D	3.30.1490.180	RNA polymerase ii	coord: 401..453 e-value: 1.9E-41 score: 144.0
None	No IPR available	PANTHER	PTHR19376:SF36	DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1	coord: 1049..1357 coord: 17..1031
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 1049..1357 coord: 17..1031
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 28..1283
IPR038120	RNA polymerase Rpb1, funnel domain superfamily	GENE3D	1.10.132.30		coord: 701..855 e-value: 4.3E-11 score: 45.0
IPR007066	RNA polymerase Rpb1, domain 3	PFAM	PF04983	RNA_pol_Rpb1_3	coord: 531..678 e-value: 6.3E-14 score: 52.2
IPR044893	RNA polymerase Rpb1, clamp domain superfamily	GENE3D	4.10.860.120	RNA polymerase II, clamp domain	coord: 28..125 e-value: 1.9E-12 score: 49.0
IPR042102	RNA polymerase Rpb1, domain 3 superfamily	GENE3D	1.10.274.100	RNA polymerase Rpb1, domain 3	coord: 535..683 e-value: 1.1E-20 score: 76.0
IPR007083	RNA polymerase Rpb1, domain 4	PFAM	PF05000	RNA_pol_Rpb1_4	coord: 742..805 e-value: 8.7E-11 score: 41.7
IPR000722	RNA polymerase, alpha subunit	PFAM	PF00623	RNA_pol_Rpb1_2	coord: 368..526 e-value: 1.5E-33 score: 116.4
IPR040403	DNA-directed RNA polymerase IV/V subunit 1, N-terminal	CDD	cd10506	RNAP_IV_RPD1_N	coord: 40..902 e-value: 0.0 score: 1213.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC10G185960.1	CmUC10G185960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046872	metal ion binding