CmUC10G184730 (gene) Watermelon (USVL531) v1

Overview
NameCmUC10G184730
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
Descriptionclassical arabinogalactan protein 9-like
LocationCmU531Chr10: 2503630 .. 2504638 (-)
RNA-Seq ExpressionCmUC10G184730
SyntenyCmUC10G184730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGGAATTTACGAATATCATTACAGTATCCATAAATATTAAAGAATTAAAATTTATAGTGAAAATGCAAAATGTTCAGTACCATCCTCTGAAAATAGAGTGACGTGTCCAATTTTATGTAGTGTAAGGGTAGGTAGCATGGAAAAATGAATACACTCACAGGTAAGACTAGATTAGCCCTAAAACTTTCTCTCTTCTTTCCCTTTATATATGAATCCTCTTCCCCAATCTTTTCCCTCGCTTCAATCTTTCTCCTTCTTCTGCTTCAATTTCTTCCAGCTATGGCTGCCGCACGTGCCATGCTCGTGCTCGCCCTATCTCTTCTTGCTCTTTCTTCCTCTTCCATTGCTCAATCTCCCTCCCCTGCTCCAGGTCCCGCCTCCGCCGCCGCACCGCCGCCTTCAACCCCTCCGCCGGTTGCACCTCCCCCGATGACACCGCCCCCTGTAGCCTCACCGCCGCCAAGCATCTCAAATCCACCGGCGGCGGCTCCTCCCGCCATCCCACCGATGATAGCTTCTCCACCGCCTATGGAATCAAGCCCAGGCCCAGGCCCAATGCCCGACAGCCCACCATCACCTCCAGGCCCAAGTTCAAGCCCAATGTCTCCGCCGTCTCCAGCGTCAGCTCCGTCGCCGCCATCACCTCCGCCGCCGGGCGGGGGATTTTCTATCCACCAGGGTGGGTACAAGGCGGCTGTTGCGGCGGTGTTGGGTGGCCTGGCCGTCGTCCTGGTTTAACACTTGAATTTGGTGTAGATTATTATTATTATGAGCTCCATACTCATTTGTGTATTCTTTTTTCTTTTTATTTCTTCATCATTTCCATCTCTTGAGAGCAGCCTGAGTGATATTTGTGGGATTTGTTAGCATTTTCATTTTTTTTCTAGCTGAATAAGAGAGACTTGTTTCTTGTTCATGGTTTCATAATAATTTAGTCAATTATACATTTAATCCTAATACCCATCTATTAAGAGAGAAAATAAATAAATAAATAAATAAATAAATAAA

mRNA sequence

CTGGAATTTACGAATATCATTACAGTATCCATAAATATTAAAGAATTAAAATTTATAGTGAAAATGCAAAATGTTCAGTACCATCCTCTGAAAATAGAGTGACGTGTCCAATTTTATGTAGTGTAAGGGTAGGTAGCATGGAAAAATGAATACACTCACAGGTAAGACTAGATTAGCCCTAAAACTTTCTCTCTTCTTTCCCTTTATATATGAATCCTCTTCCCCAATCTTTTCCCTCGCTTCAATCTTTCTCCTTCTTCTGCTTCAATTTCTTCCAGCTATGGCTGCCGCACGTGCCATGCTCGTGCTCGCCCTATCTCTTCTTGCTCTTTCTTCCTCTTCCATTGCTCAATCTCCCTCCCCTGCTCCAGGTCCCGCCTCCGCCGCCGCACCGCCGCCTTCAACCCCTCCGCCGGTTGCACCTCCCCCGATGACACCGCCCCCTGTAGCCTCACCGCCGCCAAGCATCTCAAATCCACCGGCGGCGGCTCCTCCCGCCATCCCACCGATGATAGCTTCTCCACCGCCTATGGAATCAAGCCCAGGCCCAGGCCCAATGCCCGACAGCCCACCATCACCTCCAGGCCCAAGTTCAAGCCCAATGTCTCCGCCGTCTCCAGCGTCAGCTCCGTCGCCGCCATCACCTCCGCCGCCGGGCGGGGGATTTTCTATCCACCAGGGTGGGTACAAGGCGGCTGTTGCGGCGGTGTTGGGTGGCCTGGCCGTCGTCCTGGTTTAACACTTGAATTTGGTGTAGATTATTATTATTATGAGCTCCATACTCATTTGTGTATTCTTTTTTCTTTTTATTTCTTCATCATTTCCATCTCTTGAGAGCAGCCTGAGTGATATTTGTGGGATTTGTTAGCATTTTCATTTTTTTTCTAGCTGAATAAGAGAGACTTGTTTCTTGTTCATGGTTTCATAATAATTTAGTCAATTATACATTTAATCCTAATACCCATCTATTAAGAGAGAAAATAAATAAATAAATAAATAAATAAATAAA

Coding sequence (CDS)

ATGAATACACTCACAGGTAAGACTAGATTAGCCCTAAAACTTTCTCTCTTCTTTCCCTTTATATATGAATCCTCTTCCCCAATCTTTTCCCTCGCTTCAATCTTTCTCCTTCTTCTGCTTCAATTTCTTCCAGCTATGGCTGCCGCACGTGCCATGCTCGTGCTCGCCCTATCTCTTCTTGCTCTTTCTTCCTCTTCCATTGCTCAATCTCCCTCCCCTGCTCCAGGTCCCGCCTCCGCCGCCGCACCGCCGCCTTCAACCCCTCCGCCGGTTGCACCTCCCCCGATGACACCGCCCCCTGTAGCCTCACCGCCGCCAAGCATCTCAAATCCACCGGCGGCGGCTCCTCCCGCCATCCCACCGATGATAGCTTCTCCACCGCCTATGGAATCAAGCCCAGGCCCAGGCCCAATGCCCGACAGCCCACCATCACCTCCAGGCCCAAGTTCAAGCCCAATGTCTCCGCCGTCTCCAGCGTCAGCTCCGTCGCCGCCATCACCTCCGCCGCCGGGCGGGGGATTTTCTATCCACCAGGGTGGGTACAAGGCGGCTGTTGCGGCGGTGTTGGGTGGCCTGGCCGTCGTCCTGGTTTAA

Protein sequence

MNTLTGKTRLALKLSLFFPFIYESSSPIFSLASIFLLLLLQFLPAMAAARAMLVLALSLLALSSSSIAQSPSPAPGPASAAAPPPSTPPPVAPPPMTPPPVASPPPSISNPPAAAPPAIPPMIASPPPMESSPGPGPMPDSPPSPPGPSSSPMSPPSPASAPSPPSPPPPGGGFSIHQGGYKAAVAAVLGGLAVVLV
Homology
BLAST of CmUC10G184730 vs. NCBI nr
Match: XP_038903480.1 (classical arabinogalactan protein 9-like [Benincasa hispida])

HSP 1 Score: 198.7 bits (504), Expect = 4.5e-47
Identity = 135/154 (87.66%), Postives = 140/154 (90.91%), Query Frame = 0

Query: 46  MAAARAMLVLALSLLALSSSSIAQSPSPAPGPASAAAPPPSTPPPVAPPPMTPPPVASPP 105
           MA+ARAMLVLALSLLAL SSSIAQSPSPAPGPASAAAPPPS+PPPVA PP TPPP ASPP
Sbjct: 1   MASARAMLVLALSLLALFSSSIAQSPSPAPGPASAAAPPPSSPPPVAAPPTTPPPAASPP 60

Query: 106 PSISNPPAAAPPAIPPMIASPPPMESSPGPGPMPDSPPSPPGPSSSP--MSPPSPASAPS 165
           P+IS PPAAAPPAIPPM+ASPP MESSPGPGPMPDSPPSPPGPS SP  MSPP+PA APS
Sbjct: 61  PTISTPPAAAPPAIPPMMASPPSMESSPGPGPMPDSPPSPPGPSPSPMSMSPPTPAPAPS 120

Query: 166 PPSPPPPGGGFSIHQGGYKAAVAAVLGGLAVVLV 198
           PPSPPPP  GFSIHQGGYKAA AAVLGGLAV LV
Sbjct: 121 PPSPPPPSAGFSIHQGGYKAAAAAVLGGLAVFLV 154

BLAST of CmUC10G184730 vs. NCBI nr
Match: XP_022923372.1 (classical arabinogalactan protein 9-like [Cucurbita moschata])

HSP 1 Score: 154.5 bits (389), Expect = 9.8e-34
Identity = 119/161 (73.91%), Postives = 128/161 (79.50%), Query Frame = 0

Query: 46  MAAARAMLVLALSLLALSSSSIAQSPSPAPGPASAAAPPPSTPPPVAPPPMTPPP----- 105
           MA ARAMLVLALSLL+L++S+IAQSPSPAPGPA  AAPPP TPPPVA PP TPPP     
Sbjct: 1   MATARAMLVLALSLLSLAASAIAQSPSPAPGPA-VAAPPPLTPPPVAAPPTTPPPTAMPP 60

Query: 106 -VASPPPSISNPPAAAPPAIPPMIASPPPMESSPGPGP--MPDSPPSPPGPSSSPMSPPS 165
             ASPPPS+S PP AAPP +PP +ASPP MES P PGP  MPDSPPSPPGPS  P   P+
Sbjct: 61  MAASPPPSMSTPPMAAPPTVPPPMASPPSMESGPSPGPSTMPDSPPSPPGPSPGPAPGPA 120

Query: 166 PASAPSPPSPPPPGGGFSIHQGGYKAA-VAAVLGGLAVVLV 198
           PASAPSPP  PPPG GFSI  GGYKAA VAAVLGGLA+VLV
Sbjct: 121 PASAPSPPPSPPPGAGFSIQHGGYKAAGVAAVLGGLAIVLV 160

BLAST of CmUC10G184730 vs. NCBI nr
Match: XP_023553563.1 (classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 154.5 bits (389), Expect = 9.8e-34
Identity = 122/162 (75.31%), Postives = 130/162 (80.25%), Query Frame = 0

Query: 46  MAAARAMLVLALSLLALSSSSIAQSPSPAPGPASAAAPPPSTPPPVAPPPMTPPP----- 105
           MA ARAMLVLALSLL+L++S+IAQSPSPAPGPA  AAPPP TPPPVA PP TPPP     
Sbjct: 1   MATARAMLVLALSLLSLAASAIAQSPSPAPGPA-VAAPPPLTPPPVAAPPTTPPPTAMPP 60

Query: 106 -VASPPPSISNPPAAAPPAIPPMIASPPPMESSPGPGP--MPDSPPSPPGPSSSPMSPPS 165
             ASPPPS+S PP AAPP + P +ASPP MES P PGP  MPDSPPSPPGPS  P S PS
Sbjct: 61  MAASPPPSMSTPPMAAPPTVLPPMASPPSMESGPSPGPTTMPDSPPSPPGPSPGPSSEPS 120

Query: 166 PASAPS-PPSPPPPGGGFSIHQGGYKAA-VAAVLGGLAVVLV 198
           PASAPS PPSPPPPG GFSI  GGYKAA VAAVLGGLA+VLV
Sbjct: 121 PASAPSPPPSPPPPGAGFSIQHGGYKAAGVAAVLGGLAIVLV 161

BLAST of CmUC10G184730 vs. NCBI nr
Match: KAG6596882.1 (hypothetical protein SDJN03_10062, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.2 bits (191), Expect = 8.9e-11
Identity = 84/151 (55.63%), Postives = 90/151 (59.60%), Query Frame = 0

Query: 46  MAAARAMLVLALSLLALSSSSIAQSPSPAPGPASAAAPPPSTPPPVAPPPMTPPPVASPP 105
           MA ARAMLVLAL   ALSSS+IAQ PS    PA+AAAP PSTP PVA P M+ PP ASPP
Sbjct: 1   MATARAMLVLALYFFALSSSAIAQGPS----PAAAAAPRPSTPSPVASPAMS-PPAASPP 60

Query: 106 PSISNPPAAAPPAIPPMIASPPPMESSPGPGPMPDSPPSPPGPSSSPMSPPSPASAPSPP 165
             IS+         PPM ASPP M  SP   PMPDSPPS P P                 
Sbjct: 61  LIISS---------PPMAASPPSMGMSPVSVPMPDSPPSLPSPG---------------- 119

Query: 166 SPPPPGGGFSIHQGGYKAAVAAVLGGLAVVL 197
             P    GFSIH GGYKA +AAVLGG+A VL
Sbjct: 121 --PGSSAGFSIHHGGYKAGLAAVLGGMAEVL 119

BLAST of CmUC10G184730 vs. NCBI nr
Match: KAG6599445.1 (Leucine-rich repeat extensin-like protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 56.6 bits (135), Expect = 2.8e-04
Identity = 56/101 (55.45%), Postives = 64/101 (63.37%), Query Frame = 0

Query: 70  SPSPAPGPASAAAPPPSTPPPVAPPPMTPPPVASPPPSISNPPAAAPPAIPPMIASPPPM 129
           SPSP P P  +  PPP +PPP +PPP  PPPV SPPP   +PP  +PP  PP + SPPP 
Sbjct: 457 SPSPPPPPVYSPPPPPPSPPPPSPPP-PPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPP 516

Query: 130 ESSPGPGPMPDSPPSPPGPSSSPMSPPSPASAPSPPSPPPP 171
             SP P P P   P PP PS  P SPP P+ +P PPSPPPP
Sbjct: 517 PPSPPPPPPPVYSPPPPPPSPPPPSPPPPSPSPPPPSPPPP 556

BLAST of CmUC10G184730 vs. ExPASy TrEMBL
Match: A0A0A0L458 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017230 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.9e-35
Identity = 123/157 (78.34%), Postives = 130/157 (82.80%), Query Frame = 0

Query: 46  MAAARAMLVLALSLLALSSSSIAQSPSPAPGPASAAAPPPSTPPPVAPPPMTPPPVASPP 105
           MA+ARAMLVL LSLL+LSSSSIAQSPSP+PGPAS AAPPPSTPPPVAPPP TPPP ASPP
Sbjct: 1   MASARAMLVLLLSLLSLSSSSIAQSPSPSPGPASPAAPPPSTPPPVAPPPTTPPPAASPP 60

Query: 106 PSISNPPAAAPPAIPPMIASPPPMESS--PGPGP-MPDSPPSPPGPSSSPMSP--PSPAS 165
            SIS PPAAAP A PPM+ASPPPME S  P PGP MP+ PPSP  PS SPMSP  P+PA 
Sbjct: 61  SSISTPPAAAPTATPPMMASPPPMEPSTAPAPGPAMPEGPPSP--PSQSPMSPPGPAPAP 120

Query: 166 APSPPSPPPPGGGFSIHQGGYKAAVAAVLGGLAVVLV 198
           AP+PPS  P   GFSIHQGGY A VAAVLGGLAVVLV
Sbjct: 121 APTPPSARPRSAGFSIHQGGYMAGVAAVLGGLAVVLV 155

BLAST of CmUC10G184730 vs. ExPASy TrEMBL
Match: A0A6J1E5X6 (classical arabinogalactan protein 9-like OS=Cucurbita moschata OX=3662 GN=LOC111431090 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 4.8e-34
Identity = 119/161 (73.91%), Postives = 128/161 (79.50%), Query Frame = 0

Query: 46  MAAARAMLVLALSLLALSSSSIAQSPSPAPGPASAAAPPPSTPPPVAPPPMTPPP----- 105
           MA ARAMLVLALSLL+L++S+IAQSPSPAPGPA  AAPPP TPPPVA PP TPPP     
Sbjct: 1   MATARAMLVLALSLLSLAASAIAQSPSPAPGPA-VAAPPPLTPPPVAAPPTTPPPTAMPP 60

Query: 106 -VASPPPSISNPPAAAPPAIPPMIASPPPMESSPGPGP--MPDSPPSPPGPSSSPMSPPS 165
             ASPPPS+S PP AAPP +PP +ASPP MES P PGP  MPDSPPSPPGPS  P   P+
Sbjct: 61  MAASPPPSMSTPPMAAPPTVPPPMASPPSMESGPSPGPSTMPDSPPSPPGPSPGPAPGPA 120

Query: 166 PASAPSPPSPPPPGGGFSIHQGGYKAA-VAAVLGGLAVVLV 198
           PASAPSPP  PPPG GFSI  GGYKAA VAAVLGGLA+VLV
Sbjct: 121 PASAPSPPPSPPPGAGFSIQHGGYKAAGVAAVLGGLAIVLV 160

BLAST of CmUC10G184730 vs. ExPASy TrEMBL
Match: A0A6P9F4J7 (basic proline-rich protein-like OS=Zalophus californianus OX=9704 GN=LOC118356431 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-04
Identity = 62/118 (52.54%), Postives = 74/118 (62.71%), Query Frame = 0

Query: 62  LSSSSIAQSPSPAPGPASAAAPPPSTPPPVAPPPMTPPPVASPPPSISNPPAAAPPAIPP 121
           L SSS + SP P+P P+  + PPPS+ P  +PPP +PP + SPPPS    P ++PP+ PP
Sbjct: 241 LPSSSPSSSPPPSPPPSLPSPPPPSSSP--SPPPSSPPSLPSPPPS---SPPSSPPSSPP 300

Query: 122 MIASPPPMESSPG---------PGPMPDSPPSPPGPSSSPMSPPSPASAPSPPSPPPP 171
            + SPPP  SSP          P P P  PPS P  SSSP SPPSP S PSPPSPPPP
Sbjct: 301 SLPSPPPPSSSPSPPPSSPPSLPSPSPSPPPSSPSSSSSPPSPPSPPSPPSPPSPPPP 353

BLAST of CmUC10G184730 vs. ExPASy TrEMBL
Match: A0A7S2C4D7 (Hypothetical protein (Fragment) OS=Haptolina brevifila OX=156173 GN=CBRE1094_LOCUS6081 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.1e-04
Identity = 56/103 (54.37%), Postives = 66/103 (64.08%), Query Frame = 0

Query: 70  SPSPAPGPASAAAPPPSTPPPVAPPPMTPPPVASPPPSISNPPAAAPPAIPPMIASPPPM 129
           SP P+P P+   +PPPS+PPP +PPP +PPP + PPP  S PP + PP +PP  + PPP 
Sbjct: 182 SPPPSPPPSPPPSPPPSSPPPPSPPPPSPPPPSPPPP--SPPPPSPPPPMPPPPSPPPPS 241

Query: 130 ESSPGPGPMPDSPPSPPGPSSSPMS--PPSPASAPSPPSPPPP 171
              P P P    PPSPP PS  P S  PPSP  AP PPSPPPP
Sbjct: 242 PPPPSPPPPCPPPPSPPPPSPPPPSPPPPSPPPAPPPPSPPPP 282

BLAST of CmUC10G184730 vs. ExPASy TrEMBL
Match: Q4A2B5 (Putative membrane protein OS=Emiliania huxleyi virus 86 (isolate United Kingdom/English Channel/1999) OX=654925 GN=EhV364 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.7e-04
Identity = 56/108 (51.85%), Postives = 65/108 (60.19%), Query Frame = 0

Query: 70   SPSPAPGPASAAAPPPSTPPPVAPPPMTPPPVASPPPSISNPPAAAPPAIPPMIASPPPM 129
            SP P+P P+   +PPP TPPP APPP  PPP + PPP    PP + PP +PP    PPP+
Sbjct: 968  SPPPSPPPSPPPSPPPPTPPPPAPPPPNPPPPSPPPPLPLPPPPSPPPPLPPPPLPPPPL 1027

Query: 130  ------ESSPGPGPMPDSPPSPPGPSSSPMSPPSPASAPS-PPSPPPP 171
                    SP P P P  PPSPP P+  P +PP PA  PS PPSPPPP
Sbjct: 1028 PPPPSPPPSPPPSPPPSPPPSPPPPTPPPPAPPPPAPPPSPPPSPPPP 1075

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038903480.14.5e-4787.66classical arabinogalactan protein 9-like [Benincasa hispida][more]
XP_022923372.19.8e-3473.91classical arabinogalactan protein 9-like [Cucurbita moschata][more]
XP_023553563.19.8e-3475.31classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo][more]
KAG6596882.18.9e-1155.63hypothetical protein SDJN03_10062, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6599445.12.8e-0455.45Leucine-rich repeat extensin-like protein 4, partial [Cucurbita argyrosperma sub... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L4581.9e-3578.34Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017230 PE=4 SV=1[more]
A0A6J1E5X64.8e-3473.91classical arabinogalactan protein 9-like OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6P9F4J71.8e-0452.54basic proline-rich protein-like OS=Zalophus californianus OX=9704 GN=LOC11835643... [more]
A0A7S2C4D75.1e-0454.37Hypothetical protein (Fragment) OS=Haptolina brevifila OX=156173 GN=CBRE1094_LOC... [more]
Q4A2B56.7e-0451.85Putative membrane protein OS=Emiliania huxleyi virus 86 (isolate United Kingdom/... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..172
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..178

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC10G184730.1CmUC10G184730.1mRNA