CmUC09G182450 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC09G182450
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CmU531Chr09: 37781270 .. 37781629 (-)
RNA-Seq Expression	CmUC09G182450
Synteny	CmUC09G182450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGGCACAAAACCTTATCTCCCTGGTCACAATCTGTCATGATGTTCATATGTGGAAAAGGAAAGGAAGATTATCTATCAAGCAAAAATCTCATCCCGACCAAGTTGATCAGAAATACAAGACATGGAAAGCCAAAAATAATATGTTCATGTCATGGCTAATCAACTCCATGACGACAGAGATCAATGAAGGATTTTTATCCTTCTCAACTGCCAGCAAAATCTGGGAGGCCGCTTGTGAAACCTATTCCAATCAAGAAAACACTGCGGAATCATTTGAAATTGAAGGGAAAATTCATGAACTACGGCAAGGGGATATGCAAGTTACTCACTACTGCACTCAACTGTCTCGTCTTTAG

mRNA sequence

ATGCTGGCACAAAACCTTATCTCCCTGGTCACAATCTGTCATGATGTTCATATGTGGAAAAGGAAAGGAAGATTATCTATCAAGCAAAAATCTCATCCCGACCAAGTTGATCAGAAATACAAGACATGGAAAGCCAAAAATAATATGTTCATGTCATGGCTAATCAACTCCATGACGACAGAGATCAATGAAGGATTTTTATCCTTCTCAACTGCCAGCAAAATCTGGGAGGCCGCTTGTGAAACCTATTCCAATCAAGAAAACACTGCGGAATCATTTGAAATTGAAGGGAAAATTCATGAACTACGGCAAGGGGATATGCAAGTTACTCACTACTGCACTCAACTGTCTCGTCTTTAG

Coding sequence (CDS)

ATGCTGGCACAAAACCTTATCTCCCTGGTCACAATCTGTCATGATGTTCATATGTGGAAAAGGAAAGGAAGATTATCTATCAAGCAAAAATCTCATCCCGACCAAGTTGATCAGAAATACAAGACATGGAAAGCCAAAAATAATATGTTCATGTCATGGCTAATCAACTCCATGACGACAGAGATCAATGAAGGATTTTTATCCTTCTCAACTGCCAGCAAAATCTGGGAGGCCGCTTGTGAAACCTATTCCAATCAAGAAAACACTGCGGAATCATTTGAAATTGAAGGGAAAATTCATGAACTACGGCAAGGGGATATGCAAGTTACTCACTACTGCACTCAACTGTCTCGTCTTTAG

Protein sequence

MLAQNLISLVTICHDVHMWKRKGRLSIKQKSHPDQVDQKYKTWKAKNNMFMSWLINSMTTEINEGFLSFSTASKIWEAACETYSNQENTAESFEIEGKIHELRQGDMQVTHYCTQLSRL

Homology

[Close]

BLAST of CmUC09G182450 vs. NCBI nr
Match: XP_024929479.1 (uncharacterized protein LOC112491646 [Ziziphus jujuba])

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-21
Identity = 56/96 (58.33%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 23  GRLSIKQKSHPDQVDQKYKTWKAKNNMFMSWLINSMTTEINEGFLSFSTASKIWEAACET 82
           G +SI +KS P     KY+TWK +N+M MSWLINSMTTE+ E FL + TA++IWEAA ET
Sbjct: 14  GEISIPEKSDP-----KYRTWKTENHMVMSWLINSMTTEVGENFLLYKTANEIWEAARET 73

Query: 83  YSNQENTAESFEIEGKIHELRQGDMQVTHYCTQLSR 119
           YS+ ENT+E FEIE ++H+LRQ D+ VT Y   L+R
Sbjct: 74  YSSSENTSELFEIETRLHDLRQEDLNVTQYFNILTR 104

[Close]

BLAST of CmUC09G182450 vs. NCBI nr
Match: XP_039020537.1 (uncharacterized protein LOC120152380 [Hibiscus syriacus])

HSP 1 Score: 110.5 bits (275), Expect = 9.8e-21
Identity = 52/86 (60.47%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 33  PDQVDQKYKTWKAKNNMFMSWLINSMTTEINEGFLSFSTASKIWEAACETYSNQENTAES 92
           P Q D+K+K W ++NNM MSWLINSMT EI E FL +  A KIWEAA ETYSN ENT E 
Sbjct: 52  PSQDDEKFKIWNSENNMVMSWLINSMTNEIGENFLLYRIARKIWEAAKETYSNNENTPEL 111

Query: 93  FEIEGKIHELRQGDMQVTHYCTQLSR 119
           FE+E  +H+ RQGD+ VT Y   L+R
Sbjct: 112 FEVESVLHDFRQGDLTVTQYFNTLNR 137

[Close]

BLAST of CmUC09G182450 vs. NCBI nr
Match: CAN68990.1 (hypothetical protein VITISV_015170 [Vitis vinifera])

HSP 1 Score: 109.8 bits (273), Expect = 1.7e-20
Identity = 49/86 (56.98%), Postives = 64/86 (74.42%), Query Frame = 0


Query: 33  PDQVDQKYKTWKAKNNMFMSWLINSMTTEINEGFLSFSTASKIWEAACETYSNQENTAES 92
           P++ D+K+K W A+NNM MSWLINSMT +I E FL + TA +IW+AA ETYSN ENT E 
Sbjct: 52  PNKTDEKFKVWNAENNMVMSWLINSMTNDIGENFLLYGTAKEIWDAAKETYSNNENTLEL 111

Query: 93  FEIEGKIHELRQGDMQVTHYCTQLSR 119
           FE+E  +H+ RQG++ VT Y   L+R
Sbjct: 112 FEVESVLHDFRQGELTVTQYFNTLNR 137

[Close]

BLAST of CmUC09G182450 vs. NCBI nr
Match: XP_041010708.1 (uncharacterized protein LOC121254656 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 109.4 bits (272), Expect = 2.2e-20
Identity = 53/108 (49.07%), Postives = 72/108 (66.67%), Query Frame = 0


Query: 14  HDVHMW---KRKGRLSIKQKSHPDQVDQKYKTWKAKNNMFMSWLINSMTTEINEGFLSFS 73
           H V M+   K K     +  + P++ D+K+K W A+NNM MSWLINSMT +I E FL + 
Sbjct: 27  HSVMMFICGKGKDDYLTRDAAKPNKTDEKFKVWNAENNMVMSWLINSMTNDIGENFLLYG 86

Query: 74  TASKIWEAACETYSNQENTAESFEIEGKIHELRQGDMQVTHYCTQLSR 119
           TA +IW+AA E YSN ENT+E FE+E  +H+ RQG++ VT Y   L+R
Sbjct: 87  TAKEIWDAAREIYSNNENTSELFEVESVLHDFRQGELTVTQYFNTLNR 134

[Close]

BLAST of CmUC09G182450 vs. NCBI nr
Match: XP_042976301.1 (uncharacterized protein LOC122307467 [Carya illinoinensis])

HSP 1 Score: 109.4 bits (272), Expect = 2.2e-20
Identity = 49/86 (56.98%), Postives = 64/86 (74.42%), Query Frame = 0


Query: 33  PDQVDQKYKTWKAKNNMFMSWLINSMTTEINEGFLSFSTASKIWEAACETYSNQENTAES 92
           P++ D+K+K W A+NNM MSWLINSMT +I E FL + TA +IW+AA ETYSN ENT+E 
Sbjct: 20  PNKTDEKFKVWNAENNMVMSWLINSMTNDIGENFLLYGTAKEIWDAAKETYSNNENTSEL 79

Query: 93  FEIEGKIHELRQGDMQVTHYCTQLSR 119
           FE+E  +H+ RQG++ VT Y   L R
Sbjct: 80  FEVESVLHDFRQGELTVTQYFNTLIR 105

[Close]

BLAST of CmUC09G182450 vs. ExPASy TrEMBL
Match: A0A6P6G5K3 (uncharacterized protein LOC112491646 OS=Ziziphus jujuba OX=326968 GN=LOC112491646 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 5.6e-22
Identity = 56/96 (58.33%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 23  GRLSIKQKSHPDQVDQKYKTWKAKNNMFMSWLINSMTTEINEGFLSFSTASKIWEAACET 82
           G +SI +KS P     KY+TWK +N+M MSWLINSMTTE+ E FL + TA++IWEAA ET
Sbjct: 14  GEISIPEKSDP-----KYRTWKTENHMVMSWLINSMTTEVGENFLLYKTANEIWEAARET 73

Query: 83  YSNQENTAESFEIEGKIHELRQGDMQVTHYCTQLSR 119
           YS+ ENT+E FEIE ++H+LRQ D+ VT Y   L+R
Sbjct: 74  YSSSENTSELFEIETRLHDLRQEDLNVTQYFNILTR 104

[Close]

BLAST of CmUC09G182450 vs. ExPASy TrEMBL
Match: A5AG88 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_015170 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 8.1e-21
Identity = 49/86 (56.98%), Postives = 64/86 (74.42%), Query Frame = 0


Query: 33  PDQVDQKYKTWKAKNNMFMSWLINSMTTEINEGFLSFSTASKIWEAACETYSNQENTAES 92
           P++ D+K+K W A+NNM MSWLINSMT +I E FL + TA +IW+AA ETYSN ENT E 
Sbjct: 52  PNKTDEKFKVWNAENNMVMSWLINSMTNDIGENFLLYGTAKEIWDAAKETYSNNENTLEL 111

Query: 93  FEIEGKIHELRQGDMQVTHYCTQLSR 119
           FE+E  +H+ RQG++ VT Y   L+R
Sbjct: 112 FEVESVLHDFRQGELTVTQYFNTLNR 137

[Close]

BLAST of CmUC09G182450 vs. ExPASy TrEMBL
Match: A0A438HLC9 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Vitis vinifera OX=29760 GN=RE2_139 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.8e-20
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 0


Query: 2   LAQNLISLVTICHDVHMWKRKGRLSIKQKSHPDQVDQKYKTWKAKNNMFMSWLINSMTTE 61
           +   +I++VTIC  VH+ K K      + + P+  +  ++ WK +N+M MSWLINSM  +
Sbjct: 380 IRNGIITMVTICVAVHLRKGKDEYLTGEAAMPETTEPGFRKWKIENSMIMSWLINSMNND 439

Query: 62  INEGFLSFSTASKIWEAACETYSNQENTAESFEIEGKIHELRQGDMQVTHYCTQLSR 119
           I E FL F TA  IW+AA ETYS+ EN +E F++E  +H+ RQG+  VT Y   L+R
Sbjct: 440 IGENFLLFGTAKDIWDAAKETYSSSENISELFQVESALHDFRQGEQTVTQYYNTLTR 496

[Close]

BLAST of CmUC09G182450 vs. ExPASy TrEMBL
Match: A0A6P9E9X7 (uncharacterized protein LOC118347921 OS=Juglans regia OX=51240 GN=LOC118347921 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.4e-20
Identity = 48/86 (55.81%), Postives = 64/86 (74.42%), Query Frame = 0


Query: 33  PDQVDQKYKTWKAKNNMFMSWLINSMTTEINEGFLSFSTASKIWEAACETYSNQENTAES 92
           P++ D+K+K W A+NNM MSWLINSMT +I E FL + TA +IW+AA E YSN ENT+E 
Sbjct: 71  PNKTDEKFKVWNAENNMVMSWLINSMTNDIGENFLLYGTAKEIWDAAKEIYSNNENTSEL 130

Query: 93  FEIEGKIHELRQGDMQVTHYCTQLSR 119
           FE+E  +H+ RQG++ VT Y   L+R
Sbjct: 131 FEVESVLHDFRQGELTVTQYFNTLNR 156

[Close]

BLAST of CmUC09G182450 vs. ExPASy TrEMBL
Match: A0A6P9EX89 (uncharacterized protein LOC108995554 isoform X1 OS=Juglans regia OX=51240 GN=LOC108995554 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.4e-20
Identity = 48/86 (55.81%), Postives = 64/86 (74.42%), Query Frame = 0


Query: 33  PDQVDQKYKTWKAKNNMFMSWLINSMTTEINEGFLSFSTASKIWEAACETYSNQENTAES 92
           P++ D+K+K W A+NNM MSWLINSMT +I E FL + TA +IW+AA E YSN ENT+E 
Sbjct: 314 PNKTDEKFKVWNAENNMVMSWLINSMTNDIGENFLLYGTAKEIWDAAKEIYSNNENTSEL 373

Query: 93  FEIEGKIHELRQGDMQVTHYCTQLSR 119
           FE+E  +H+ RQG++ VT Y   L+R
Sbjct: 374 FEVESVLHDFRQGELTVTQYFNTLNR 399

The following BLAST results are available for this feature:

BLAST of CmUC09G182450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_024929479.1	1.2e-21	58.33	uncharacterized protein LOC112491646 [Ziziphus jujuba]	[more]
XP_039020537.1	9.8e-21	60.47	uncharacterized protein LOC120152380 [Hibiscus syriacus]	[more]
CAN68990.1	1.7e-20	56.98	hypothetical protein VITISV_015170 [Vitis vinifera]	[more]
XP_041010708.1	2.2e-20	49.07	uncharacterized protein LOC121254656 [Juglans microcarpa x Juglans regia]	[more]
XP_042976301.1	2.2e-20	56.98	uncharacterized protein LOC122307467 [Carya illinoinensis]	[more]

BLAST of CmUC09G182450 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC09G182450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P6G5K3	5.6e-22	58.33	uncharacterized protein LOC112491646 OS=Ziziphus jujuba OX=326968 GN=LOC11249164...	[more]
A5AG88	8.1e-21	56.98	Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITI...	[more]
A0A438HLC9	1.8e-20	43.59	Retrovirus-related Pol polyprotein from transposon RE2 OS=Vitis vinifera OX=2976...	[more]
A0A6P9E9X7	2.4e-20	55.81	uncharacterized protein LOC118347921 OS=Juglans regia OX=51240 GN=LOC118347921 P...	[more]
A0A6P9EX89	2.4e-20	55.81	uncharacterized protein LOC108995554 isoform X1 OS=Juglans regia OX=51240 GN=LOC...	[more]

BLAST of CmUC09G182450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 32..118
None	No IPR available	PANTHER	PTHR37610:SF47	SUBFAMILY NOT NAMED	coord: 32..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC09G182450.1	CmUC09G182450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane