CmUC09G181020 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC09G181020
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Ty3/gypsy retrotransposon protein
Location	CmU531Chr09: 36430220 .. 36430648 (-)
RNA-Seq Expression	CmUC09G181020
Synteny	CmUC09G181020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGAATGCTGATAGGAAGAGACGTGATGTTGAGTTTCAGGTTGGTGAGTGGGTGTTTTTAAATATTCGTCCTTATCGTCAATCGACTTTGCGTCAAAGGCGGAATGAGAAACTTTCCCCAAATTATTTCGGGCTTTATAGAGTGTCGAATAGAATTGGGGAGGTCGCATATCGTTTGGAGTTACCACCATCGGCGACTATCCATCTGATTTTCCATGTGTTGCAGTTGAAACGGGTTTTGGGAGAACATCACACTATTCAACCTTTAGTGCAACAATTAACAGAAACTGATAAGTGGATAACTGAACCACTTGAGATTTTTGGCTATCGTAAGAATTCGAAAACCTGTGTATGGGAAGTGTTGGTCAGATGGAAAGGATTACCGGCTCATGAGGCGACTTGGGAACTTTTTGATGACTTCTAG

mRNA sequence

ATGAAGAAGAATGCTGATAGGAAGAGACGTGATGTTGAGTTTCAGGTTGGTGAGTGGGTGTTTTTAAATATTCGTCCTTATCGTCAATCGACTTTGCGTCAAAGGCGGAATGAGAAACTTTCCCCAAATTATTTCGGGCTTTATAGAGTGTCGAATAGAATTGGGGAGGTCGCATATCGTTTGGAGTTACCACCATCGGCGACTATCCATCTGATTTTCCATGTGTTGCAGTTGAAACGGGTTTTGGGAGAACATCACACTATTCAACCTTTAGTGCAACAATTAACAGAAACTGATAAGTGGATAACTGAACCACTTGAGATTTTTGGCTATCGTAAGAATTCGAAAACCTGTGTATGGGAAGTGTTGGTCAGATGGAAAGGATTACCGGCTCATGAGGCGACTTGGGAACTTTTTGATGACTTCTAG

Coding sequence (CDS)

ATGAAGAAGAATGCTGATAGGAAGAGACGTGATGTTGAGTTTCAGGTTGGTGAGTGGGTGTTTTTAAATATTCGTCCTTATCGTCAATCGACTTTGCGTCAAAGGCGGAATGAGAAACTTTCCCCAAATTATTTCGGGCTTTATAGAGTGTCGAATAGAATTGGGGAGGTCGCATATCGTTTGGAGTTACCACCATCGGCGACTATCCATCTGATTTTCCATGTGTTGCAGTTGAAACGGGTTTTGGGAGAACATCACACTATTCAACCTTTAGTGCAACAATTAACAGAAACTGATAAGTGGATAACTGAACCACTTGAGATTTTTGGCTATCGTAAGAATTCGAAAACCTGTGTATGGGAAGTGTTGGTCAGATGGAAAGGATTACCGGCTCATGAGGCGACTTGGGAACTTTTTGATGACTTCTAG

Protein sequence

MKKNADRKRRDVEFQVGEWVFLNIRPYRQSTLRQRRNEKLSPNYFGLYRVSNRIGEVAYRLELPPSATIHLIFHVLQLKRVLGEHHTIQPLVQQLTETDKWITEPLEIFGYRKNSKTCVWEVLVRWKGLPAHEATWELFDDF

Homology

[Close]

BLAST of CmUC09G181020 vs. NCBI nr
Match: KAA0050511.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 189.9 bits (481), Expect = 1.5e-44
Identity = 86/141 (60.99%), Postives = 105/141 (74.47%), Query Frame = 0


Query: 1    MKKNADRKRRDVEFQVGEWVFLNIRPYRQSTLRQRRNEKLSPNYFGLYRVSNRIGEVAYR 60
            MKK AD KRR+VEFQ G+ VFL +RPYRQ+++R++RNEKLSP YFG YRV  RIG+VAYR
Sbjct: 1470 MKKQADSKRREVEFQEGDMVFLKLRPYRQASIRKKRNEKLSPKYFGPYRVLERIGKVAYR 1529

Query: 61   LELPPSATIHLIFHVLQLKRVLGEHHTIQPLVQQLTETDKWITEPLEIFGYRKNSKTCVW 120
            LELP  A IH +FHV QLK+ +G   T+Q L   + E  +WIT+P E++GYRKN  T  W
Sbjct: 1530 LELPAEAAIHPVFHVSQLKKAVGRGETVQSLTPYINENHEWITQPEEVYGYRKNPSTREW 1589

Query: 121  EVLVRWKGLPAHEATWELFDD 142
            E L+ WKGLP HEATWE   D
Sbjct: 1590 EALISWKGLPPHEATWESCTD 1610

[Close]

BLAST of CmUC09G181020 vs. NCBI nr
Match: TYK24654.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 189.9 bits (481), Expect = 1.5e-44
Identity = 86/141 (60.99%), Postives = 105/141 (74.47%), Query Frame = 0


Query: 1   MKKNADRKRRDVEFQVGEWVFLNIRPYRQSTLRQRRNEKLSPNYFGLYRVSNRIGEVAYR 60
           MKK AD KRR+VEFQ G+ VFL +RPYRQ+++R++RNEKLSP YFG YRV  RIG+VAYR
Sbjct: 79  MKKQADSKRREVEFQEGDMVFLKLRPYRQASIRKKRNEKLSPKYFGPYRVLERIGKVAYR 138

Query: 61  LELPPSATIHLIFHVLQLKRVLGEHHTIQPLVQQLTETDKWITEPLEIFGYRKNSKTCVW 120
           LELP  A IH +FHV QLK+ +G   T+Q L   + E  +WIT+P E++GYRKN  T  W
Sbjct: 139 LELPAEAAIHPVFHVSQLKKAVGRGETVQSLTPYINENHEWITQPEEVYGYRKNPSTREW 198

Query: 121 EVLVRWKGLPAHEATWELFDD 142
           E L+ WKGLP HEATWE   D
Sbjct: 199 EALISWKGLPPHEATWESCTD 219

[Close]

BLAST of CmUC09G181020 vs. NCBI nr
Match: TYK06572.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 189.9 bits (481), Expect = 1.5e-44
Identity = 86/141 (60.99%), Postives = 105/141 (74.47%), Query Frame = 0


Query: 1    MKKNADRKRRDVEFQVGEWVFLNIRPYRQSTLRQRRNEKLSPNYFGLYRVSNRIGEVAYR 60
            MKK AD KRR+VEFQ G+ VFL +RPYRQ+++R++RNEKLSP YFG YRV  RIG+VAYR
Sbjct: 1470 MKKQADSKRREVEFQEGDMVFLKLRPYRQASIRKKRNEKLSPKYFGPYRVLERIGKVAYR 1529

Query: 61   LELPPSATIHLIFHVLQLKRVLGEHHTIQPLVQQLTETDKWITEPLEIFGYRKNSKTCVW 120
            LELP  A IH +FHV QLK+ +G   T+Q L   + E  +WIT+P E++GYRKN  T  W
Sbjct: 1530 LELPAEAAIHPVFHVSQLKKAVGRGETVQSLTPYINENHEWITQPEEVYGYRKNPSTREW 1589

Query: 121  EVLVRWKGLPAHEATWELFDD 142
            E L+ WKGLP HEATWE   D
Sbjct: 1590 EALISWKGLPPHEATWESCTD 1610

[Close]

BLAST of CmUC09G181020 vs. NCBI nr
Match: KAA0041253.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 189.5 bits (480), Expect = 2.0e-44
Identity = 87/141 (61.70%), Postives = 107/141 (75.89%), Query Frame = 0


Query: 1   MKKNADRKRRDVEFQVGEWVFLNIRPYRQSTLRQRRNEKLSPNYFGLYRVSNRIGEVAYR 60
           MKK AD KRRDVEFQ G++VFL +RPYRQ++LR++RNEKLSP YFG YR+  RIG VAY+
Sbjct: 823 MKKFADLKRRDVEFQTGDFVFLKLRPYRQTSLRKKRNEKLSPKYFGPYRILERIGTVAYK 882

Query: 61  LELPPSATIHLIFHVLQLKRVLGEHHTIQPLVQQLTETDKWITEPLEIFGYRKNSKTCVW 120
           LELP +A IH +FHV QLK+ +G+   +QPL   + E  +WIT+P EI+ YRKN  T  W
Sbjct: 883 LELPSNAAIHPVFHVSQLKKAIGDIKEVQPLDPYVNECHEWITQPEEIYAYRKNQATKEW 942

Query: 121 EVLVRWKGLPAHEATWELFDD 142
           E LV WKGLP HEATWE + D
Sbjct: 943 EALVHWKGLPPHEATWENYAD 963

[Close]

BLAST of CmUC09G181020 vs. NCBI nr
Match: KAA0063300.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 188.7 bits (478), Expect = 3.4e-44
Identity = 87/141 (61.70%), Postives = 106/141 (75.18%), Query Frame = 0


Query: 1    MKKNADRKRRDVEFQVGEWVFLNIRPYRQSTLRQRRNEKLSPNYFGLYRVSNRIGEVAYR 60
            MKK AD KRRDVEFQ G++VFL +RPYRQ++LR++RNEKLSP YFG YR+  RIG VAY+
Sbjct: 1231 MKKFADLKRRDVEFQTGDFVFLKLRPYRQTSLRKKRNEKLSPKYFGPYRILERIGTVAYK 1290

Query: 61   LELPPSATIHLIFHVLQLKRVLGEHHTIQPLVQQLTETDKWITEPLEIFGYRKNSKTCVW 120
            LELP +A IH +FHV QLK+ +G    +QPL   + E  +WIT+P EI+ YRKN  T  W
Sbjct: 1291 LELPSNAAIHPVFHVSQLKKAIGNIKEVQPLDPYVNECHEWITQPEEIYAYRKNQATKEW 1350

Query: 121  EVLVRWKGLPAHEATWELFDD 142
            E LV WKGLP HEATWE + D
Sbjct: 1351 EALVHWKGLPPHEATWENYAD 1371

[Close]

BLAST of CmUC09G181020 vs. ExPASy TrEMBL
Match: A0A5D3DM31 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002040 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 7.4e-45
Identity = 86/141 (60.99%), Postives = 105/141 (74.47%), Query Frame = 0


Query: 1   MKKNADRKRRDVEFQVGEWVFLNIRPYRQSTLRQRRNEKLSPNYFGLYRVSNRIGEVAYR 60
           MKK AD KRR+VEFQ G+ VFL +RPYRQ+++R++RNEKLSP YFG YRV  RIG+VAYR
Sbjct: 79  MKKQADSKRREVEFQEGDMVFLKLRPYRQASIRKKRNEKLSPKYFGPYRVLERIGKVAYR 138

Query: 61  LELPPSATIHLIFHVLQLKRVLGEHHTIQPLVQQLTETDKWITEPLEIFGYRKNSKTCVW 120
           LELP  A IH +FHV QLK+ +G   T+Q L   + E  +WIT+P E++GYRKN  T  W
Sbjct: 139 LELPAEAAIHPVFHVSQLKKAVGRGETVQSLTPYINENHEWITQPEEVYGYRKNPSTREW 198

Query: 121 EVLVRWKGLPAHEATWELFDD 142
           E L+ WKGLP HEATWE   D
Sbjct: 199 EALISWKGLPPHEATWESCTD 219

[Close]

BLAST of CmUC09G181020 vs. ExPASy TrEMBL
Match: A0A5D3C5N7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G00350 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 7.4e-45
Identity = 86/141 (60.99%), Postives = 105/141 (74.47%), Query Frame = 0


Query: 1    MKKNADRKRRDVEFQVGEWVFLNIRPYRQSTLRQRRNEKLSPNYFGLYRVSNRIGEVAYR 60
            MKK AD KRR+VEFQ G+ VFL +RPYRQ+++R++RNEKLSP YFG YRV  RIG+VAYR
Sbjct: 1470 MKKQADSKRREVEFQEGDMVFLKLRPYRQASIRKKRNEKLSPKYFGPYRVLERIGKVAYR 1529

Query: 61   LELPPSATIHLIFHVLQLKRVLGEHHTIQPLVQQLTETDKWITEPLEIFGYRKNSKTCVW 120
            LELP  A IH +FHV QLK+ +G   T+Q L   + E  +WIT+P E++GYRKN  T  W
Sbjct: 1530 LELPAEAAIHPVFHVSQLKKAVGRGETVQSLTPYINENHEWITQPEEVYGYRKNPSTREW 1589

Query: 121  EVLVRWKGLPAHEATWELFDD 142
            E L+ WKGLP HEATWE   D
Sbjct: 1590 EALISWKGLPPHEATWESCTD 1610

[Close]

BLAST of CmUC09G181020 vs. ExPASy TrEMBL
Match: A0A5A7UAE4 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G001550 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 7.4e-45
Identity = 86/141 (60.99%), Postives = 105/141 (74.47%), Query Frame = 0


Query: 1    MKKNADRKRRDVEFQVGEWVFLNIRPYRQSTLRQRRNEKLSPNYFGLYRVSNRIGEVAYR 60
            MKK AD KRR+VEFQ G+ VFL +RPYRQ+++R++RNEKLSP YFG YRV  RIG+VAYR
Sbjct: 1470 MKKQADSKRREVEFQEGDMVFLKLRPYRQASIRKKRNEKLSPKYFGPYRVLERIGKVAYR 1529

Query: 61   LELPPSATIHLIFHVLQLKRVLGEHHTIQPLVQQLTETDKWITEPLEIFGYRKNSKTCVW 120
            LELP  A IH +FHV QLK+ +G   T+Q L   + E  +WIT+P E++GYRKN  T  W
Sbjct: 1530 LELPAEAAIHPVFHVSQLKKAVGRGETVQSLTPYINENHEWITQPEEVYGYRKNPSTREW 1589

Query: 121  EVLVRWKGLPAHEATWELFDD 142
            E L+ WKGLP HEATWE   D
Sbjct: 1590 EALISWKGLPPHEATWESCTD 1610

[Close]

BLAST of CmUC09G181020 vs. ExPASy TrEMBL
Match: A0A5A7TDM4 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G002330 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 9.6e-45
Identity = 87/141 (61.70%), Postives = 107/141 (75.89%), Query Frame = 0


Query: 1   MKKNADRKRRDVEFQVGEWVFLNIRPYRQSTLRQRRNEKLSPNYFGLYRVSNRIGEVAYR 60
           MKK AD KRRDVEFQ G++VFL +RPYRQ++LR++RNEKLSP YFG YR+  RIG VAY+
Sbjct: 823 MKKFADLKRRDVEFQTGDFVFLKLRPYRQTSLRKKRNEKLSPKYFGPYRILERIGTVAYK 882

Query: 61  LELPPSATIHLIFHVLQLKRVLGEHHTIQPLVQQLTETDKWITEPLEIFGYRKNSKTCVW 120
           LELP +A IH +FHV QLK+ +G+   +QPL   + E  +WIT+P EI+ YRKN  T  W
Sbjct: 883 LELPSNAAIHPVFHVSQLKKAIGDIKEVQPLDPYVNECHEWITQPEEIYAYRKNQATKEW 942

Query: 121 EVLVRWKGLPAHEATWELFDD 142
           E LV WKGLP HEATWE + D
Sbjct: 943 EALVHWKGLPPHEATWENYAD 963

[Close]

BLAST of CmUC09G181020 vs. ExPASy TrEMBL
Match: A0A5A7V7S9 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold205G001230 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.6e-44
Identity = 87/141 (61.70%), Postives = 106/141 (75.18%), Query Frame = 0


Query: 1    MKKNADRKRRDVEFQVGEWVFLNIRPYRQSTLRQRRNEKLSPNYFGLYRVSNRIGEVAYR 60
            MKK AD KRRDVEFQ G++VFL +RPYRQ++LR++RNEKLSP YFG YR+  RIG VAY+
Sbjct: 1231 MKKFADLKRRDVEFQTGDFVFLKLRPYRQTSLRKKRNEKLSPKYFGPYRILERIGTVAYK 1290

Query: 61   LELPPSATIHLIFHVLQLKRVLGEHHTIQPLVQQLTETDKWITEPLEIFGYRKNSKTCVW 120
            LELP +A IH +FHV QLK+ +G    +QPL   + E  +WIT+P EI+ YRKN  T  W
Sbjct: 1291 LELPSNAAIHPVFHVSQLKKAIGNIKEVQPLDPYVNECHEWITQPEEIYAYRKNQATKEW 1350

Query: 121  EVLVRWKGLPAHEATWELFDD 142
            E LV WKGLP HEATWE + D
Sbjct: 1351 EALVHWKGLPPHEATWENYAD 1371

The following BLAST results are available for this feature:

BLAST of CmUC09G181020 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050511.1	1.5e-44	60.99	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK24654.1	1.5e-44	60.99	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK06572.1	1.5e-44	60.99	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0041253.1	2.0e-44	61.70	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0063300.1	3.4e-44	61.70	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of CmUC09G181020 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC09G181020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DM31	7.4e-45	60.99	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3C5N7	7.4e-45	60.99	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UAE4	7.4e-45	60.99	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TDM4	9.6e-45	61.70	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7V7S9	1.6e-44	61.70	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of CmUC09G181020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.40		coord: 84..142 e-value: 1.1E-5 score: 27.1
None	No IPR available	PANTHER	PTHR46148:SF38	PROTEIN NYNRIN-LIKE	coord: 1..136
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 1..136
IPR000953	Chromo/chromo shadow domain	PROSITE	PS50013	CHROMO_2	coord: 103..142 score: 8.5031
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 68..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC09G181020.1	CmUC09G181020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
cellular_component	GO:0016020	membrane