CmUC09G180770 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC09G180770
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Cleavage and polyadenylation specificity factor subunit 6
Location	CmU531Chr09: 36162389 .. 36164857 (-)
RNA-Seq Expression	CmUC09G180770
Synteny	CmUC09G180770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAAGTCATTCCAAGAAGATGATGAGGAGAAATTGGCAGATTTCCACGCGCGATTCGAGATTAGGGTTTCTTTCTCTATCCTCTCTGTGTGCTCTTCTTCCTCTTTTCTTCTGCACTTCTTCCCTAATTGGGGCTTCGATCTCTTAGTTTTAATTTCTCTTCCTTACTTTGAAATTCACTTTCTAACTGCTTCCATCCACTTTCTGATGTTGCCTGCATTCAATTTCTGAATTTGAATGAATCTTTAGAGGACGTTGTTGAAGAAGGTAGACATGGATGAAGGTGAGGGTGGGTTCGGTGAGGGTGTGGATCAGATTGATCAGTTTCATCGGAATGAGGCCATTTCAGCCGTTGCTGATGATGGTTTCTTGGGCGAAGATGAGGATGAATATGAAGACCTGTATAACGATGTTAATGTTGGGGAGGGGTTCCTTCAGTCGTTGAGGAAGAACGATGATTTGGGATTCAAGAGCGAGGAGGAGCCCAAGATGGAGCCTCCTGCACCTGTACCACCCAGTTCCGGTGCTTCCATACCTGGTATTGGTGGAGGTGTGACTGAAGTTGCTGGTTTAGAAGATGGTGGGCGCAGTGTTTCGGAGAGAGTAACCGAGGGTTACAATCAGATTCCAGATTTAAGAGCGAATGAGATGGCTATCAGAGGTGGGGTGGGATCGGGGCCGCCTGTAGCCGGCGGAGGTGGGATTAGGGTTGAATTAGGGCAAGGGAGTAAAAACAATGAGTTGGAGGAGCGAAGTAGTAATAACGTAGCTCCGCATCAGGCACAGCCCCATCCCCAGCCCCAGCCCCAGCCCCAGACCCAGATCCAGACCCATCCCCAGCCCCAGCCCCAGCCCCAGCCCCAGCCCCAGCCGCAGCACCTCCAGCAACCATCTCAGAGCGGAGTCTTAGGAAATCCTGGGAGTGTAGAAAATGAAGGTTTGCTAAGGCAAGGTGGTGGAGTAAATGTAAATGGGGTTGGTGGAAATGGGTTCGGTAATATGGGGAGTGCAGGGGGAAGTGGCGGTGGAACGATCTTGTTTGTTGGTGATTTACATTGGTGGACTACTGATGCGGAGCTGGAGGCTGAACTCTGTAAGTATGGTCCTTTGAAGGAGGTCAAGTTTTATGACGAGAAAGCCAGTGGAAAATCAAAAGGCTACTGCCAGGTTGAGTTTTATGATCCTTCTGCTGCTACGGCTTGCAAGGAGGGAATGAATGGGCATATTTTTAATGGACGGCCATGTGTTGTTGCATATGCATCCCCGTTTAGTGTTAAAAGGATGGGAGAAGCCCAAGTGAATAGGAACCAACAGATGTCCCAAGCTACTAATCCTCAAGCAAGGAGAGGTCCTAATGATGCTGTAGGTAAAATTGGTGGAAGTAGCATTGCAACGGGTGGTAACTATCAAGGTGGTGATAACAATAGAGGTTCTGGGAGAGGCAATTGGGGAAGAGGTAATGCACATGGAATGGGAGGTCGAGGACCGGCTGGCCCAATGAGGAGTAGGGGTGGTGGGATGGGTGGCAGAGGTATAATGGGAAATGGTGGAAATGGATTTGGCCAAGGAATTGGTGCTACCCCTCCTTTGTTGCATCCGCAGTCAATGATGGGTCAAGGTTTTGATCCATCTTTTGGTGCACCCATGGGGAGAATGGGCACATATGGTGGTTTTCCTGGAGCTCCGGCCCCCCCTTTTTCTGGAATTTTGTCGTCCTTTCCCCCTGTTGGGGGTGTTGGCCTTCCTGGTGTAGCTCCTCATGTGAACCCAGCATTTTTTGGAAGAGGTATGCCTATGAATGGAATGGGTATGATGCCAACATCAGGTGTTGATGGGCCTAATATGGGAATGTGGTCTGATCCTAGTATGGGTGGATGGGGCAGTGAAGAGCATGGTGGAGGAAGAGCTGATGAATCTAGTTATGGAGAAGAAGCTGGTTCTGACCAGCAATATGGTGAAGGTAGTCATGAAAGGGGCGCATGGGCCAATTCTGCAAAGGAGAAAGATAGAGGCTCCGAAAGGGACTGGTCACAGTCTTCTGATAGAAGGTATCGAGATGATAGAGATGTTGGATATGATAGAGAGAGATCCAAAGAAAAAGATCCGGGGCCTGACCATGATTGGCCAGATAGAAGGCCACGTGATGATAGAGATATAGGGCGTGAAAGGGATAAAGATAGGGATCGAGATAGGGATAGAGAACGATCTCGAGATTATGAGCGTGGCCATCATGATCGTGATCGTGAACGTGATAGGGATCGTGACCGTGATAGGTACAAGGAAGATAGGGATAGATTTTCTGATCATCATAGGTATAGAGATCGGGAACCAGAGCATGAGGAGGATTGGGATAGGGGACGGTCATCAAGGACTCATAGCAAGTCCCGATTATCACAAGAAGAAGAAAATCGCTCTAGATCAAGGGATGCTGATTATGGGAAGAGGCGGAGGCTTACTTCTGAATAG

mRNA sequence

ATGACAAAGTCATTCCAAGAAGATGATGAGGAGAAATTGGCAGATTTCCACGCGCGATTCGAGATTAGGAGGACGTTGTTGAAGAAGGTAGACATGGATGAAGGTGAGGGTGGGTTCGGTGAGGGTGTGGATCAGATTGATCAGTTTCATCGGAATGAGGCCATTTCAGCCGTTGCTGATGATGGTTTCTTGGGCGAAGATGAGGATGAATATGAAGACCTGTATAACGATGTTAATGTTGGGGAGGGGTTCCTTCAGTCGTTGAGGAAGAACGATGATTTGGGATTCAAGAGCGAGGAGGAGCCCAAGATGGAGCCTCCTGCACCTGTACCACCCAGTTCCGGTGCTTCCATACCTGGTATTGGTGGAGGTGTGACTGAAGTTGCTGGTTTAGAAGATGGTGGGCGCAGTGTTTCGGAGAGAGTAACCGAGGGTTACAATCAGATTCCAGATTTAAGAGCGAATGAGATGGCTATCAGAGGTGGGGTGGGATCGGGGCCGCCTGTAGCCGGCGGAGGTGGGATTAGGGTTGAATTAGGGCAAGGGAGTAAAAACAATGAGTTGGAGGAGCGAAGTAGTAATAACGTAGCTCCGCATCAGGCACAGCCCCATCCCCAGCCCCAGCCCCAGCCCCAGACCCAGATCCAGACCCATCCCCAGCCCCAGCCCCAGCCCCAGCCCCAGCCCCAGCCGCAGCACCTCCAGCAACCATCTCAGAGCGGAGTCTTAGGAAATCCTGGGAGTGTAGAAAATGAAGGTTTGCTAAGGCAAGGTGGTGGAGTAAATGTAAATGGGGTTGGTGGAAATGGGTTCGGTAATATGGGGAGTGCAGGGGGAAGTGGCGGTGGAACGATCTTGTTTGTTGGTGATTTACATTGGTGGACTACTGATGCGGAGCTGGAGGCTGAACTCTGTAAGTATGGTCCTTTGAAGGAGGTCAAGTTTTATGACGAGAAAGCCAGTGGAAAATCAAAAGGCTACTGCCAGGTTGAGTTTTATGATCCTTCTGCTGCTACGGCTTGCAAGGAGGGAATGAATGGGCATATTTTTAATGGACGGCCATGTGTTGTTGCATATGCATCCCCGTTTAGTGTTAAAAGGATGGGAGAAGCCCAAGTGAATAGGAACCAACAGATGTCCCAAGCTACTAATCCTCAAGCAAGGAGAGGTCCTAATGATGCTGTAGGTAAAATTGGTGGAAGTAGCATTGCAACGGGTGGTAACTATCAAGGTGGTGATAACAATAGAGGTTCTGGGAGAGGCAATTGGGGAAGAGGTAATGCACATGGAATGGGAGGTCGAGGACCGGCTGGCCCAATGAGGAGTAGGGGTGGTGGGATGGGTGGCAGAGGTATAATGGGAAATGGTGGAAATGGATTTGGCCAAGGAATTGGTGCTACCCCTCCTTTGTTGCATCCGCAGTCAATGATGGGTCAAGGTTTTGATCCATCTTTTGGTGCACCCATGGGGAGAATGGGCACATATGGTGGTTTTCCTGGAGCTCCGGCCCCCCCTTTTTCTGGAATTTTGTCGTCCTTTCCCCCTGTTGGGGGTGTTGGCCTTCCTGGTGTAGCTCCTCATGTGAACCCAGCATTTTTTGGAAGAGGTATGCCTATGAATGGAATGGGTATGATGCCAACATCAGGTGTTGATGGGCCTAATATGGGAATGTGGTCTGATCCTAGTATGGGTGGATGGGGCAGTGAAGAGCATGGTGGAGGAAGAGCTGATGAATCTAGTTATGGAGAAGAAGCTGGTTCTGACCAGCAATATGGTGAAGGTAGTCATGAAAGGGGCGCATGGGCCAATTCTGCAAAGGAGAAAGATAGAGGCTCCGAAAGGGACTGGTCACAGTCTTCTGATAGAAGGTATCGAGATGATAGAGATGTTGGATATGATAGAGAGAGATCCAAAGAAAAAGATCCGGGGCCTGACCATGATTGGCCAGATAGAAGGCCACGTGATGATAGAGATATAGGGCGTGAAAGGGATAAAGATAGGGATCGAGATAGGGATAGAGAACGATCTCGAGATTATGAGCGTGGCCATCATGATCGTGATCGTGAACGTGATAGGGATCGTGACCGTGATAGGTACAAGGAAGATAGGGATAGATTTTCTGATCATCATAGGTATAGAGATCGGGAACCAGAGCATGAGGAGGATTGGGATAGGGGACGGTCATCAAGGACTCATAGCAAGTCCCGATTATCACAAGAAGAAGAAAATCGCTCTAGATCAAGGGATGCTGATTATGGGAAGAGGCGGAGGCTTACTTCTGAATAG

Coding sequence (CDS)

ATGACAAAGTCATTCCAAGAAGATGATGAGGAGAAATTGGCAGATTTCCACGCGCGATTCGAGATTAGGAGGACGTTGTTGAAGAAGGTAGACATGGATGAAGGTGAGGGTGGGTTCGGTGAGGGTGTGGATCAGATTGATCAGTTTCATCGGAATGAGGCCATTTCAGCCGTTGCTGATGATGGTTTCTTGGGCGAAGATGAGGATGAATATGAAGACCTGTATAACGATGTTAATGTTGGGGAGGGGTTCCTTCAGTCGTTGAGGAAGAACGATGATTTGGGATTCAAGAGCGAGGAGGAGCCCAAGATGGAGCCTCCTGCACCTGTACCACCCAGTTCCGGTGCTTCCATACCTGGTATTGGTGGAGGTGTGACTGAAGTTGCTGGTTTAGAAGATGGTGGGCGCAGTGTTTCGGAGAGAGTAACCGAGGGTTACAATCAGATTCCAGATTTAAGAGCGAATGAGATGGCTATCAGAGGTGGGGTGGGATCGGGGCCGCCTGTAGCCGGCGGAGGTGGGATTAGGGTTGAATTAGGGCAAGGGAGTAAAAACAATGAGTTGGAGGAGCGAAGTAGTAATAACGTAGCTCCGCATCAGGCACAGCCCCATCCCCAGCCCCAGCCCCAGCCCCAGACCCAGATCCAGACCCATCCCCAGCCCCAGCCCCAGCCCCAGCCCCAGCCCCAGCCGCAGCACCTCCAGCAACCATCTCAGAGCGGAGTCTTAGGAAATCCTGGGAGTGTAGAAAATGAAGGTTTGCTAAGGCAAGGTGGTGGAGTAAATGTAAATGGGGTTGGTGGAAATGGGTTCGGTAATATGGGGAGTGCAGGGGGAAGTGGCGGTGGAACGATCTTGTTTGTTGGTGATTTACATTGGTGGACTACTGATGCGGAGCTGGAGGCTGAACTCTGTAAGTATGGTCCTTTGAAGGAGGTCAAGTTTTATGACGAGAAAGCCAGTGGAAAATCAAAAGGCTACTGCCAGGTTGAGTTTTATGATCCTTCTGCTGCTACGGCTTGCAAGGAGGGAATGAATGGGCATATTTTTAATGGACGGCCATGTGTTGTTGCATATGCATCCCCGTTTAGTGTTAAAAGGATGGGAGAAGCCCAAGTGAATAGGAACCAACAGATGTCCCAAGCTACTAATCCTCAAGCAAGGAGAGGTCCTAATGATGCTGTAGGTAAAATTGGTGGAAGTAGCATTGCAACGGGTGGTAACTATCAAGGTGGTGATAACAATAGAGGTTCTGGGAGAGGCAATTGGGGAAGAGGTAATGCACATGGAATGGGAGGTCGAGGACCGGCTGGCCCAATGAGGAGTAGGGGTGGTGGGATGGGTGGCAGAGGTATAATGGGAAATGGTGGAAATGGATTTGGCCAAGGAATTGGTGCTACCCCTCCTTTGTTGCATCCGCAGTCAATGATGGGTCAAGGTTTTGATCCATCTTTTGGTGCACCCATGGGGAGAATGGGCACATATGGTGGTTTTCCTGGAGCTCCGGCCCCCCCTTTTTCTGGAATTTTGTCGTCCTTTCCCCCTGTTGGGGGTGTTGGCCTTCCTGGTGTAGCTCCTCATGTGAACCCAGCATTTTTTGGAAGAGGTATGCCTATGAATGGAATGGGTATGATGCCAACATCAGGTGTTGATGGGCCTAATATGGGAATGTGGTCTGATCCTAGTATGGGTGGATGGGGCAGTGAAGAGCATGGTGGAGGAAGAGCTGATGAATCTAGTTATGGAGAAGAAGCTGGTTCTGACCAGCAATATGGTGAAGGTAGTCATGAAAGGGGCGCATGGGCCAATTCTGCAAAGGAGAAAGATAGAGGCTCCGAAAGGGACTGGTCACAGTCTTCTGATAGAAGGTATCGAGATGATAGAGATGTTGGATATGATAGAGAGAGATCCAAAGAAAAAGATCCGGGGCCTGACCATGATTGGCCAGATAGAAGGCCACGTGATGATAGAGATATAGGGCGTGAAAGGGATAAAGATAGGGATCGAGATAGGGATAGAGAACGATCTCGAGATTATGAGCGTGGCCATCATGATCGTGATCGTGAACGTGATAGGGATCGTGACCGTGATAGGTACAAGGAAGATAGGGATAGATTTTCTGATCATCATAGGTATAGAGATCGGGAACCAGAGCATGAGGAGGATTGGGATAGGGGACGGTCATCAAGGACTCATAGCAAGTCCCGATTATCACAAGAAGAAGAAAATCGCTCTAGATCAAGGGATGCTGATTATGGGAAGAGGCGGAGGCTTACTTCTGAATAG

Protein sequence

MTKSFQEDDEEKLADFHARFEIRRTLLKKVDMDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKNDDLGFKSEEEPKMEPPAPVPPSSGASIPGIGGGVTEVAGLEDGGRSVSERVTEGYNQIPDLRANEMAIRGGVGSGPPVAGGGGIRVELGQGSKNNELEERSSNNVAPHQAQPHPQPQPQPQTQIQTHPQPQPQPQPQPQPQHLQQPSQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGNMGSAGGSGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATACKEGMNGHIFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRGPNDAVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRGIMGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEHGGGRADESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRDVGYDRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRERDRDRDRDRYKEDRDRFSDHHRYRDREPEHEEDWDRGRSSRTHSKSRLSQEEENRSRSRDADYGKRRRLTSE

Homology

[Close]

BLAST of CmUC09G180770 vs. NCBI nr
Match: XP_038897335.1 (cleavage and polyadenylation specificity factor subunit 6-like [Benincasa hispida] >XP_038897338.1 cleavage and polyadenylation specificity factor subunit 6-like [Benincasa hispida])

HSP 1 Score: 1288.1 bits (3332), Expect = 0.0e+00
Identity = 683/730 (93.56%), Postives = 693/730 (94.93%), Query Frame = 0


Query: 32  MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 91
           MDE EGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN
Sbjct: 1   MDESEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 92  DDLGFKSEEEPKMEPPAPVPPSSGASIPGIGGGVTEVAGLEDGGRSVSERVTEGYNQIPD 151
           DDLGFK+ EEPKMEPPAP PPSSGASIPG+GGG TEVAGL DGG SVSERVTEGYNQIPD
Sbjct: 61  DDLGFKT-EEPKMEPPAPAPPSSGASIPGVGGGATEVAGLGDGGHSVSERVTEGYNQIPD 120

Query: 152 LRANEMAIRGGVGSGPPVAGGGGIRVELGQGSKNNELEERSSNNVAPHQAQPHPQPQPQP 211
           +RANEMAIRGG G GPPV GGGGIRVELGQGSK NELEERS+NN+A HQA         P
Sbjct: 121 IRANEMAIRGGAGPGPPVGGGGGIRVELGQGSKTNELEERSNNNIAAHQA---------P 180

Query: 212 QTQIQTHPQPQPQPQPQPQPQHLQQPSQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGF 271
           Q       Q QPQ Q QPQPQH  QP QSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGF
Sbjct: 181 Q-------QQQPQLQAQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGF 240

Query: 272 GNMGSAGGSGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQVE 331
           GNMGSAGG GGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQVE
Sbjct: 241 GNMGSAGGGGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQVE 300

Query: 332 FYDPSAATACKEGMNGHIFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRGP 391
           FYDPSAATACKEGMNGHIFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRGP
Sbjct: 301 FYDPSAATACKEGMNGHIFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRGP 360

Query: 392 NDAVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRG 451
           NDAVGKIGGS+IATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRG
Sbjct: 361 NDAVGKIGGSNIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRG 420

Query: 452 IMGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILS 511
           IMGNGGNGFGQGIGA PPLLHPQSMM QGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILS
Sbjct: 421 IMGNGGNGFGQGIGAAPPLLHPQSMMAQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILS 480

Query: 512 SFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEH 571
           SFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEH
Sbjct: 481 SFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEH 540

Query: 572 GGGRADESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRDVG 631
           GGGRADESSYGEEAGSDQQYGEGSH+RGAWANS KEKDRGSERDWSQSSDRRYRDDRDVG
Sbjct: 541 GGGRADESSYGEEAGSDQQYGEGSHDRGAWANSTKEKDRGSERDWSQSSDRRYRDDRDVG 600

Query: 632 YDRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRERD 691
           YDRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRERD
Sbjct: 601 YDRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRERD 660

Query: 692 RDRDRDRYKEDRDRFSDHHRYRDREPEHEEDWDRGRSSRTHSKSRLSQEEENRSRSRDAD 751
           RDRDRDRYKEDRDR+SDHHRYRDREPEHEEDW+RGRSSRTHSKSRLSQEEENRSR+RDAD
Sbjct: 661 RDRDRDRYKEDRDRYSDHHRYRDREPEHEEDWERGRSSRTHSKSRLSQEEENRSRTRDAD 713

Query: 752 YGKRRRLTSE 762
           YGKRRRLTSE
Sbjct: 721 YGKRRRLTSE 713

[Close]

BLAST of CmUC09G180770 vs. NCBI nr
Match: XP_038897113.1 (uncharacterized PE-PGRS family protein PE_PGRS46-like [Benincasa hispida])

HSP 1 Score: 1266.9 bits (3277), Expect = 0.0e+00
Identity = 674/730 (92.33%), Postives = 686/730 (93.97%), Query Frame = 0


Query: 32  MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 91
           MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN
Sbjct: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 92  DDLGFKSEEEPKMEPPAPVPPSSGASIPGIGGGVTEVAGLEDGGRSVSERVTEGYNQIPD 151
           DDLGFK+ EEPKMEPPAPVPPSSGASIPG+GGG TEVAGL DGG SVSERVTEGYNQIPD
Sbjct: 61  DDLGFKT-EEPKMEPPAPVPPSSGASIPGVGGGATEVAGLGDGGHSVSERVTEGYNQIPD 120

Query: 152 LRANEMAIRGGVGSGPPVAGGGGIRVELGQGSKNNELEERSSNNVAPHQAQPHPQPQPQP 211
           LR NEMA+RGGVGSGPPV GGGGIRVELGQGSK +ELEERSSNNV  HQAQ         
Sbjct: 121 LRTNEMAVRGGVGSGPPVGGGGGIRVELGQGSKTSELEERSSNNVVAHQAQ--------- 180

Query: 212 QTQIQTHPQPQPQPQPQPQPQHLQQPSQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGF 271
                   Q Q QPQPQPQPQH  QP QSGVLGNPGSVENEGLLRQGG +NVNGVGGN F
Sbjct: 181 -------HQHQQQPQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGVINVNGVGGNAF 240

Query: 272 GNMGSAGGSGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQVE 331
           GNMGSAGG GGGTILFVGDLHWWTTDAELE ELCKYGPLKEVKFYDEKASGKSKGYCQVE
Sbjct: 241 GNMGSAGGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVE 300

Query: 332 FYDPSAATACKEGMNGHIFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRGP 391
           FYDPSAATACKEGMNGHIFNGRPCVVAYASPFSVK+MGEAQVNRNQQM+QATNPQARRGP
Sbjct: 301 FYDPSAATACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQMAQATNPQARRGP 360

Query: 392 NDAVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRG 451
           NDAVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRG
Sbjct: 361 NDAVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRG 420

Query: 452 IMGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILS 511
           IMGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILS
Sbjct: 421 IMGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILS 480

Query: 512 SFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEH 571
           SFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEH
Sbjct: 481 SFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEH 540

Query: 572 GGGRADESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRDVG 631
           GGGRA ESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRD     
Sbjct: 541 GGGRAGESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRD----- 600

Query: 632 YDRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRERD 691
            DRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDR+R+RD
Sbjct: 601 -DRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRERDRD 660

Query: 692 RDRDRDRYKEDRDRFSDHHRYRDREPEHEEDWDRGRSSRTHSKSRLSQEEENRSRSRDAD 751
           RDRDRDRYKEDRDR+ DHHRYRDREPEHEEDW+RGRSSRTHSKSRLSQ+EENRSRSRD D
Sbjct: 661 RDRDRDRYKEDRDRYFDHHRYRDREPEHEEDWERGRSSRTHSKSRLSQDEENRSRSRDVD 707

Query: 752 YGKRRRLTSE 762
           YGKRRRLTSE
Sbjct: 721 YGKRRRLTSE 707

[Close]

BLAST of CmUC09G180770 vs. NCBI nr
Match: XP_031744545.1 (cleavage and polyadenylation specificity factor subunit CG7185-like [Cucumis sativus] >XP_031744546.1 cleavage and polyadenylation specificity factor subunit CG7185-like [Cucumis sativus] >KAE8645915.1 hypothetical protein Csa_011894 [Cucumis sativus])

HSP 1 Score: 1266.1 bits (3275), Expect = 0.0e+00
Identity = 674/731 (92.20%), Postives = 692/731 (94.66%), Query Frame = 0


Query: 32  MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 91
           MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRK+
Sbjct: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKS 60

Query: 92  DDLGFKSEEEPKMEPPAPVPPSSGASIPGIGGGVTEVAGLED-GGRSVSERVTEGYNQIP 151
           DDLGFK EEEPKMEPPAPVPPSS ASIPGIGGG TEV GL D GGR+VSERVTEGYNQIP
Sbjct: 61  DDLGFKREEEPKMEPPAPVPPSSAASIPGIGGGATEVTGLGDAGGRTVSERVTEGYNQIP 120

Query: 152 DLRANEMAIRGGVGSGPPVAGGGGIRVELGQGSKNNELEERSSNNVAPHQAQPHPQPQPQ 211
           DLR NEMAIRGGVGSGPPV  G GIRVELGQGSK  ELEERSSNNVA HQA         
Sbjct: 121 DLRTNEMAIRGGVGSGPPVGTGVGIRVELGQGSKAIELEERSSNNVAGHQA--------- 180

Query: 212 PQTQIQTHPQPQPQPQPQPQPQHLQQPSQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNG 271
           PQ Q Q  PQPQPQPQPQPQPQH  QP QSGVLGNPGSVENEGLLRQGGGVNVNGVGGNG
Sbjct: 181 PQQQ-QQQPQPQPQPQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNG 240

Query: 272 FGNMGSAGGSGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQV 331
           FGN+GSAGG GGGTILFVGDLHWWTTDAELE ELCKYGPLKEVKFYDEKASGKSKGYCQV
Sbjct: 241 FGNIGSAGGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQV 300

Query: 332 EFYDPSAATACKEGMNGHIFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRG 391
           EFYDPSAATACKEGMNGHIFNGRPCVVAYASPFSVK+MGEAQV+RNQQ++QATNPQARR 
Sbjct: 301 EFYDPSAATACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVSRNQQIAQATNPQARRA 360

Query: 392 PNDAVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGR 451
           PN+AVGKIGG+SIATGGNYQGGDNNRGSGRGNWGR NAHGMGGRGPAG MR RGGGMGGR
Sbjct: 361 PNEAVGKIGGNSIATGGNYQGGDNNRGSGRGNWGRSNAHGMGGRGPAGQMRGRGGGMGGR 420

Query: 452 GIMGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGIL 511
           GIMGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGIL
Sbjct: 421 GIMGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGIL 480

Query: 512 SSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEE 571
           SSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEE
Sbjct: 481 SSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEE 540

Query: 572 HGGGRADESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRDV 631
            GGGRA ESSYGEEAGSDQ YGEGSHERG WANSAKEKDRGSERDWSQSSDRRYRDDRDV
Sbjct: 541 QGGGRAGESSYGEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDRRYRDDRDV 600

Query: 632 GYDRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRER 691
           GYDRERSKEKDPGPDHDWPDRRPR+DRDIGRERDKDRDR+RDRERSRDYERGHH+RDRER
Sbjct: 601 GYDRERSKEKDPGPDHDWPDRRPREDRDIGRERDKDRDRERDRERSRDYERGHHERDRER 660

Query: 692 DRDRDRDRYKEDRDRFSDHHRYRDREPEHEEDWDRGRSSRTHSKSRLSQEEENRSRSRDA 751
           +RDRDRDRYK+DRD++SDHHRYRDREPEH+EDW+RGRSSRTHSKSRLSQEEENRSRSRDA
Sbjct: 661 ERDRDRDRYKDDRDKYSDHHRYRDREPEHDEDWERGRSSRTHSKSRLSQEEENRSRSRDA 720

Query: 752 DYGKRRRLTSE 762
           DYGKRRRLTSE
Sbjct: 721 DYGKRRRLTSE 721

[Close]

BLAST of CmUC09G180770 vs. NCBI nr
Match: XP_031744552.1 (cleavage and polyadenylation specificity factor subunit CG7185 [Cucumis sativus] >XP_031744554.1 cleavage and polyadenylation specificity factor subunit CG7185-like [Cucumis sativus] >KAE8645917.1 hypothetical protein Csa_011892 [Cucumis sativus])

HSP 1 Score: 1262.7 bits (3266), Expect = 0.0e+00
Identity = 677/739 (91.61%), Postives = 695/739 (94.05%), Query Frame = 0


Query: 32  MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 91
           MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRK+
Sbjct: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKS 60

Query: 92  DDLGFKSEEEPKMEPPAPVPPSSGASIPGIGGGVTEVAGLED-GGRSVSERVTEGYNQIP 151
           DDLGFK EEEPKMEPPAPVPPSSGASIPGIGGG TEV GL D GGR+VSERVTEGYNQIP
Sbjct: 61  DDLGFKREEEPKMEPPAPVPPSSGASIPGIGGGATEVTGLGDAGGRTVSERVTEGYNQIP 120

Query: 152 DLRANEMAIRGGVGSGPPVAGGGGIRVELGQGSKNNELEERSSNNVAPHQA------QPH 211
           DLR NEMAIRGGVGSGPPV  G GIRVELGQGSK  ELEERSSNNVA HQA      Q  
Sbjct: 121 DLRTNEMAIRGGVGSGPPVGTGVGIRVELGQGSKAIELEERSSNNVAGHQAPQQQQQQQQ 180

Query: 212 PQPQPQPQTQIQTHPQPQPQPQPQPQPQHLQQPSQSGVLGNPGSVENEGLLRQGGGVNVN 271
            Q Q Q Q Q Q  PQPQPQPQPQPQPQH  QP QSGVLGNPGSVENEGLLRQGGGVNVN
Sbjct: 181 QQQQQQQQQQQQQQPQPQPQPQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVN 240

Query: 272 GVGGNGFGNMGSAGGSGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKS 331
           GVGGNGF N+GSAGG GGGTILFVGDLHWWTTDAELE ELCKYGPLKEVKFYDEKASGKS
Sbjct: 241 GVGGNGFANIGSAGGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKS 300

Query: 332 KGYCQVEFYDPSAATACKEGMNGHIFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATN 391
           KGYCQVEFYD SAATACKEGMNGHIFNGRPCVVAYASPFSVK+MGEAQV+RNQQ++QATN
Sbjct: 301 KGYCQVEFYDSSAATACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVSRNQQIAQATN 360

Query: 392 PQARRGPNDAVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRG 451
           PQARR PN+AVGKIGG+SIATGGNYQGGDNNRGSGRGNWGR NAHGMGGRGPAGPMR RG
Sbjct: 361 PQARRAPNEAVGKIGGNSIATGGNYQGGDNNRGSGRGNWGRSNAHGMGGRGPAGPMRGRG 420

Query: 452 GGMGGRGIMGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAP 511
           GGMGGRGIMGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAP
Sbjct: 421 GGMGGRGIMGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAP 480

Query: 512 PFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMG 571
           PFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMG
Sbjct: 481 PFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMG 540

Query: 572 GWGSEEHGGGRADESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRY 631
           GWGSEE GGGRA ESSYGEEAGSDQ YGEGSHERG WANSAKEKDRGSERDWSQSSDRRY
Sbjct: 541 GWGSEEQGGGRAGESSYGEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDRRY 600

Query: 632 RDDRDVGYDRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHH 691
           RDDRDVGYDRERSKEKDPGPDHDWPDRRPR+DRDIGRERDK+RDRDRDRERSRDYERGHH
Sbjct: 601 RDDRDVGYDRERSKEKDPGPDHDWPDRRPREDRDIGRERDKERDRDRDRERSRDYERGHH 660

Query: 692 DRDRERDRDRDRDRYKEDRDRFSDHHRYRDREPEHEEDWDRGRSSRT--HSKSRLSQEEE 751
           +RDRER+RDRDRDRYK+DRDR+SDHHRYRDREPEH+EDW+RGRSSRT  HSKSRLSQEEE
Sbjct: 661 ERDRERERDRDRDRYKDDRDRYSDHHRYRDREPEHDEDWERGRSSRTHSHSKSRLSQEEE 720

Query: 752 NRSRSRDADYGKRRRLTSE 762
           +RSRSRDADYGKRRRLTSE
Sbjct: 721 SRSRSRDADYGKRRRLTSE 739

[Close]

BLAST of CmUC09G180770 vs. NCBI nr
Match: TYK07956.1 (cleavage and polyadenylation specificity factor subunit 6 [Cucumis melo var. makuwa])

HSP 1 Score: 1253.0 bits (3241), Expect = 0.0e+00
Identity = 669/733 (91.27%), Postives = 686/733 (93.59%), Query Frame = 0


Query: 32  MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 91
           MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN
Sbjct: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 92  DDLGFKSEEEPKMEPPAPVPPSSGASIPGIGGGVTEVAGLED-GGRSVSERVTEGYNQIP 151
           D LGFK EEEPKMEPPAPVPP+SGASIPGIGGG TEV GL D GG +VSERVTEGYNQIP
Sbjct: 61  DGLGFKREEEPKMEPPAPVPPTSGASIPGIGGGATEVTGLGDAGGHTVSERVTEGYNQIP 120

Query: 152 DLRANEMAIRGGVGSGPPVAGGGGIRVELGQGSKNNELEERSSNNVAPHQAQPHPQPQPQ 211
           DLR NEMAIRGG GSGPPV GG GIRVELGQGSK  ELEERSSNNVA HQA         
Sbjct: 121 DLRTNEMAIRGGAGSGPPVGGGVGIRVELGQGSKPIELEERSSNNVAGHQA--------- 180

Query: 212 PQTQIQTHPQPQPQPQPQPQPQHLQQPSQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNG 271
                   PQ QPQ QPQPQPQH  QP QSGVLGNPGSVENEGLLRQGGGVNVNGVGGNG
Sbjct: 181 --------PQ-QPQLQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNG 240

Query: 272 FGNMGSAGGSGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQV 331
           FGN+GSAGG  GGT+LFVGDLHWWTTDAELE ELCKYGPLKEVKFYDEKASGKSKGYCQV
Sbjct: 241 FGNVGSAGGGSGGTVLFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQV 300

Query: 332 EFYDPSAATACKEGMNGHIFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRG 391
           EFYDPSAATACKEGMNGHIFNGRPCVVAYASPFSVK+MGEAQVNRNQQ++QATNPQARR 
Sbjct: 301 EFYDPSAATACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRA 360

Query: 392 PNDAVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGR 451
           PNDAVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMR RGGG+GGR
Sbjct: 361 PNDAVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRGRGGGIGGR 420

Query: 452 GIMGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGIL 511
           GIMGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAP+GRMGTYGGFPGAPAPPFSGIL
Sbjct: 421 GIMGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPIGRMGTYGGFPGAPAPPFSGIL 480

Query: 512 SSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEE 571
           SSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEE
Sbjct: 481 SSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEE 540

Query: 572 HGGGRADESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRDV 631
            GGGRA ESSYGEEAGSDQ YGEGSHERG WANSAKEKDRGSERDWSQSSDRRYRDDRDV
Sbjct: 541 QGGGRAGESSYGEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDRRYRDDRDV 600

Query: 632 GYDRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRER 691
           GYDRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHH+RDRER
Sbjct: 601 GYDRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHERDRER 660

Query: 692 DRDRDRDRYKEDRDRFSDHHRYRDREPEHEEDWDRGRSSRT--HSKSRLSQEEENRSRSR 751
           +RDRDRDRYK+DR+R+SDHHRYRDREPEH+EDW+RGRSSRT  HSKSRLSQEEE+RSRSR
Sbjct: 661 ERDRDRDRYKDDRERYSDHHRYRDREPEHDEDWERGRSSRTHSHSKSRLSQEEESRSRSR 715

Query: 752 DADYGKRRRLTSE 762
           DADYGKRRRLTSE
Sbjct: 721 DADYGKRRRLTSE 715

[Close]

BLAST of CmUC09G180770 vs. ExPASy Swiss-Prot
Match: Q9ZR40 (Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia OX=4092 GN=U2AF65B PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 5.0e-04
Identity = 63/140 (45.00%), Postives = 80/140 (57.14%), Query Frame = 0


Query: 617 SQSSDRRYRDDRDVGYDRERSKEKDPGPDHDWPDRRPRD-DRDIGRERDKDRDRDRDRER 676
           SQ S R    DRD    R R K+++ G D D    R RD DRD GR+RD+ RDRD+DRER
Sbjct: 42  SQHSSRENEKDRD--SSRSREKDRERGRDKD----RDRDRDRDRGRDRDRGRDRDKDRER 101

Query: 677 SRDYERGHHDRDRERDRDRDRDRYKEDRDRFSDHHRYRDREPEHEEDWDRGRSSRTHSKS 736
            +D +R H DR R+R   R+++R + DRD   D HR RD + + E   DR    R  S+S
Sbjct: 102 EKDRDRHHGDRHRDRSDRREKERTR-DRDD-DDRHRTRDYDQQREHAKDRESRHRHRSRS 161

Query: 737 RLSQEEENRSRSRDADYGKR 756
           R   E  +RSRSR     KR
Sbjct: 162 RGRSEHRSRSRSRSRSKSKR 173

[Close]

BLAST of CmUC09G180770 vs. ExPASy TrEMBL
Match: A0A0A0K3G6 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G104800 PE=4 SV=1)

HSP 1 Score: 1255.7 bits (3248), Expect = 0.0e+00
Identity = 667/731 (91.24%), Postives = 685/731 (93.71%), Query Frame = 0


Query: 32  MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 91
           MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRK+
Sbjct: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKS 60

Query: 92  DDLGFKSEEEPKMEPPAPVPPSSGASIPGIGGGVTEVAGLED-GGRSVSERVTEGYNQIP 151
           DDLGFK EEEPKMEPPAPVPPSS ASIPGIGGG TEV GL D GGR+VSERVTEGYNQIP
Sbjct: 61  DDLGFKREEEPKMEPPAPVPPSSAASIPGIGGGATEVTGLGDAGGRTVSERVTEGYNQIP 120

Query: 152 DLRANEMAIRGGVGSGPPVAGGGGIRVELGQGSKNNELEERSSNNVAPHQAQPHPQPQPQ 211
           DLR NEMAIRGGVGSGPPV  G GIRVELGQGSK  ELEERSSNNVA HQA         
Sbjct: 121 DLRTNEMAIRGGVGSGPPVGTGVGIRVELGQGSKAIELEERSSNNVAGHQA--------- 180

Query: 212 PQTQIQTHPQPQPQPQPQPQPQHLQQPSQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNG 271
                     PQPQPQPQPQPQH  QP QSGVLGNPGSVENEGLLRQGGGVNVNGVGGNG
Sbjct: 181 ---------PPQPQPQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNG 240

Query: 272 FGNMGSAGGSGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQV 331
           FGN+GSAGG GGGTILFVGDLHWWTTDAELE ELCKYGPLKEVKFYDEKASGKSKGYCQV
Sbjct: 241 FGNIGSAGGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQV 300

Query: 332 EFYDPSAATACKEGMNGHIFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRG 391
           EFYD SAATACKEGMNGHIFNGRPCVVAYASPFSVK+MGEAQV+RNQQ++QATNPQARR 
Sbjct: 301 EFYDSSAATACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVSRNQQIAQATNPQARRA 360

Query: 392 PNDAVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGR 451
           PN+AVGKIGG+SIATGGNYQGGDNNRGSGRGNWGR NAHGMGGRGPAG MR RGGGMGGR
Sbjct: 361 PNEAVGKIGGNSIATGGNYQGGDNNRGSGRGNWGRSNAHGMGGRGPAGQMRGRGGGMGGR 420

Query: 452 GIMGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGIL 511
           GIMGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGIL
Sbjct: 421 GIMGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGIL 480

Query: 512 SSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEE 571
           SSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEE
Sbjct: 481 SSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEE 540

Query: 572 HGGGRADESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRDV 631
            GGGRA ESSYGEEAGSDQ YGEGSHERG WANSAKEKDRGSERDWSQSSDRRYRDDRDV
Sbjct: 541 QGGGRAGESSYGEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDRRYRDDRDV 600

Query: 632 GYDRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRER 691
           GYDRERSKEKDPGPDHDWPDRRPR+DRDIGRERDKDRDR+RDRERSRDYERGHH+RDRER
Sbjct: 601 GYDRERSKEKDPGPDHDWPDRRPREDRDIGRERDKDRDRERDRERSRDYERGHHERDRER 660

Query: 692 DRDRDRDRYKEDRDRFSDHHRYRDREPEHEEDWDRGRSSRTHSKSRLSQEEENRSRSRDA 751
           +RDRDRDRYK+DRD++SDHHRYRDREPEH+EDW+RGRSSRTHSKSRLSQEEENRSRSRDA
Sbjct: 661 ERDRDRDRYKDDRDKYSDHHRYRDREPEHDEDWERGRSSRTHSKSRLSQEEENRSRSRDA 713

Query: 752 DYGKRRRLTSE 762
           DYGKRRRLTSE
Sbjct: 721 DYGKRRRLTSE 713

[Close]

BLAST of CmUC09G180770 vs. ExPASy TrEMBL
Match: A0A5D3CC60 (Cleavage and polyadenylation specificity factor subunit 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00770 PE=4 SV=1)

HSP 1 Score: 1253.0 bits (3241), Expect = 0.0e+00
Identity = 669/733 (91.27%), Postives = 686/733 (93.59%), Query Frame = 0


Query: 32  MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 91
           MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN
Sbjct: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 92  DDLGFKSEEEPKMEPPAPVPPSSGASIPGIGGGVTEVAGLED-GGRSVSERVTEGYNQIP 151
           D LGFK EEEPKMEPPAPVPP+SGASIPGIGGG TEV GL D GG +VSERVTEGYNQIP
Sbjct: 61  DGLGFKREEEPKMEPPAPVPPTSGASIPGIGGGATEVTGLGDAGGHTVSERVTEGYNQIP 120

Query: 152 DLRANEMAIRGGVGSGPPVAGGGGIRVELGQGSKNNELEERSSNNVAPHQAQPHPQPQPQ 211
           DLR NEMAIRGG GSGPPV GG GIRVELGQGSK  ELEERSSNNVA HQA         
Sbjct: 121 DLRTNEMAIRGGAGSGPPVGGGVGIRVELGQGSKPIELEERSSNNVAGHQA--------- 180

Query: 212 PQTQIQTHPQPQPQPQPQPQPQHLQQPSQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNG 271
                   PQ QPQ QPQPQPQH  QP QSGVLGNPGSVENEGLLRQGGGVNVNGVGGNG
Sbjct: 181 --------PQ-QPQLQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNG 240

Query: 272 FGNMGSAGGSGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQV 331
           FGN+GSAGG  GGT+LFVGDLHWWTTDAELE ELCKYGPLKEVKFYDEKASGKSKGYCQV
Sbjct: 241 FGNVGSAGGGSGGTVLFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQV 300

Query: 332 EFYDPSAATACKEGMNGHIFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRG 391
           EFYDPSAATACKEGMNGHIFNGRPCVVAYASPFSVK+MGEAQVNRNQQ++QATNPQARR 
Sbjct: 301 EFYDPSAATACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRA 360

Query: 392 PNDAVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGR 451
           PNDAVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMR RGGG+GGR
Sbjct: 361 PNDAVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRGRGGGIGGR 420

Query: 452 GIMGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGIL 511
           GIMGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAP+GRMGTYGGFPGAPAPPFSGIL
Sbjct: 421 GIMGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPIGRMGTYGGFPGAPAPPFSGIL 480

Query: 512 SSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEE 571
           SSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEE
Sbjct: 481 SSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEE 540

Query: 572 HGGGRADESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRDV 631
            GGGRA ESSYGEEAGSDQ YGEGSHERG WANSAKEKDRGSERDWSQSSDRRYRDDRDV
Sbjct: 541 QGGGRAGESSYGEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDRRYRDDRDV 600

Query: 632 GYDRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRER 691
           GYDRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHH+RDRER
Sbjct: 601 GYDRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHERDRER 660

Query: 692 DRDRDRDRYKEDRDRFSDHHRYRDREPEHEEDWDRGRSSRT--HSKSRLSQEEENRSRSR 751
           +RDRDRDRYK+DR+R+SDHHRYRDREPEH+EDW+RGRSSRT  HSKSRLSQEEE+RSRSR
Sbjct: 661 ERDRDRDRYKDDRERYSDHHRYRDREPEHDEDWERGRSSRTHSHSKSRLSQEEESRSRSR 715

Query: 752 DADYGKRRRLTSE 762
           DADYGKRRRLTSE
Sbjct: 721 DADYGKRRRLTSE 715

[Close]

BLAST of CmUC09G180770 vs. ExPASy TrEMBL
Match: A0A6J1F726 (cleavage and polyadenylation specificity factor subunit CG7185-like OS=Cucurbita moschata OX=3662 GN=LOC111442737 PE=4 SV=1)

HSP 1 Score: 1247.6 bits (3227), Expect = 0.0e+00
Identity = 666/734 (90.74%), Postives = 684/734 (93.19%), Query Frame = 0


Query: 32  MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 91
           MDEGEGG G G DQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN
Sbjct: 1   MDEGEGGLGVGADQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 92  DDLGFKSEEEPKMEPPAPVPPSSGASIPGIGGGVTEVAGLEDGGRSVSERVTEGYNQIPD 151
           DDLGFKSEEEPKMEPPA VPP+SGASIPG GGG T+V GL DGG SV+ERVTEGYNQIPD
Sbjct: 61  DDLGFKSEEEPKMEPPAAVPPTSGASIPGFGGGTTDVPGLGDGGHSVAERVTEGYNQIPD 120

Query: 152 LRANEMAIRGGVGSGPPVAGGGGIRVELGQGSKNNELEERSSNNVAPHQAQPHPQPQPQP 211
           LR NEMAIR G GSGPP+ GGGGIRVELGQGSK NELEERSSNNVA HQA P  QPQP  
Sbjct: 121 LRTNEMAIRVGAGSGPPMGGGGGIRVELGQGSKTNELEERSSNNVAAHQAPPQQQPQPLQ 180

Query: 212 QTQIQTHPQPQPQPQPQPQPQHLQQPSQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGF 271
           Q Q    P  QPQPQPQ Q QH  Q  Q GVLGNP SVENEGLLRQGGGVNVNGVGGNGF
Sbjct: 181 QLQ----PPAQPQPQPQQQTQHHHQAQQGGVLGNPVSVENEGLLRQGGGVNVNGVGGNGF 240

Query: 272 GNMGSA----GGSGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGY 331
           GN+G+A    GG GGGTILFVGDLHWWTTDAELE ELCKYGPLKEVKF+DEKASGKSKGY
Sbjct: 241 GNVGNAGGGGGGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGY 300

Query: 332 CQVEFYDPSAATACKEGMNGHIFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQA 391
           CQVEFYDPSAATACKEGMNGH+FNGRPCVVAYASPFSVKRMGEAQVNRNQQM+QATNPQA
Sbjct: 301 CQVEFYDPSAATACKEGMNGHMFNGRPCVVAYASPFSVKRMGEAQVNRNQQMAQATNPQA 360

Query: 392 RRGPNDAVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGM 451
           RRGPND VGK+GGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMR+RGGGM
Sbjct: 361 RRGPNDTVGKMGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRNRGGGM 420

Query: 452 GGRGIMGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFS 511
           GGRGIMGNGGNGFGQG+GATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFS
Sbjct: 421 GGRGIMGNGGNGFGQGMGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFS 480

Query: 512 GILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWG 571
           GILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWG
Sbjct: 481 GILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWG 540

Query: 572 SEEHGGGRADESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDD 631
           SEEHGGGRA ESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRD 
Sbjct: 541 SEEHGGGRAGESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRD- 600

Query: 632 RDVGYDRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRD 691
                DRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRD+ERSRDYERGHHDRD
Sbjct: 601 -----DRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDKERSRDYERGHHDRD 660

Query: 692 RERDRDRDRDRYKEDRDRFSDHHRYRDREPEHEEDWDRGRSSRTHSKSRLSQEEENRSRS 751
           R+RDRDRDRDRYKEDRDR+SDHHRYRDREPEH+EDW+RGRSSRTHSKSRL QEEENRSR+
Sbjct: 661 RDRDRDRDRDRYKEDRDRYSDHHRYRDREPEHDEDWERGRSSRTHSKSRLPQEEENRSRT 720

Query: 752 RDADYGKRRRLTSE 762
           RDADYGKRRRLTSE
Sbjct: 721 RDADYGKRRRLTSE 724

[Close]

BLAST of CmUC09G180770 vs. ExPASy TrEMBL
Match: A0A6J1ILS2 (cleavage and polyadenylation specificity factor subunit 6-like OS=Cucurbita maxima OX=3661 GN=LOC111476425 PE=4 SV=1)

HSP 1 Score: 1243.0 bits (3215), Expect = 0.0e+00
Identity = 665/734 (90.60%), Postives = 682/734 (92.92%), Query Frame = 0


Query: 32  MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 91
           MDEGEGG G G DQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN
Sbjct: 1   MDEGEGGLGVGADQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 92  DDLGFKSEEEPKMEPPAPVPPSSGASIPGIGGGVTEVAGLEDGGRSVSERVTEGYNQIPD 151
           DDLGFKSEEEPKMEPPA VPP+SGASIPG GGG T+V GL DGG SV+ERVTEGYNQIPD
Sbjct: 61  DDLGFKSEEEPKMEPPAAVPPTSGASIPGFGGGTTDVPGLGDGGHSVAERVTEGYNQIPD 120

Query: 152 LRANEMAIRGGVGSGPPVAGGGGIRVELGQGSKNNELEERSSNNVAPHQAQPHPQPQPQP 211
           LRANEMAIR G GSGPP+ GGGGIRVELGQGSK NELEERSSNNVA HQA    QPQPQ 
Sbjct: 121 LRANEMAIRVGAGSGPPIGGGGGIRVELGQGSKTNELEERSSNNVAAHQAPQQQQPQPQQ 180

Query: 212 QTQIQTHPQPQPQPQPQPQPQHLQQPSQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGF 271
           Q       QP  QPQPQ Q QH  Q  Q GVLGNP SVENEGLLRQGGGVNVNGVGGNGF
Sbjct: 181 QL------QPPAQPQPQQQTQHHHQAQQGGVLGNPVSVENEGLLRQGGGVNVNGVGGNGF 240

Query: 272 GNMGSA----GGSGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGY 331
           GN+GSA    GG GGGTILFVGDLHWWTTDAELE ELCKYGPLKEVKF+DEKASGKSKGY
Sbjct: 241 GNVGSAGGGGGGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGY 300

Query: 332 CQVEFYDPSAATACKEGMNGHIFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQA 391
           CQVEFYDPSAATACKEGMNGH+FNGRPCVVAYASPFSVKRMGEAQVNRNQQM+QATNPQA
Sbjct: 301 CQVEFYDPSAATACKEGMNGHMFNGRPCVVAYASPFSVKRMGEAQVNRNQQMAQATNPQA 360

Query: 392 RRGPNDAVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGM 451
           RRGPND VGK+GGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMR+RGGGM
Sbjct: 361 RRGPNDTVGKMGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRNRGGGM 420

Query: 452 GGRGIMGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFS 511
           GGRGIMGNGGNGFGQG+GATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFS
Sbjct: 421 GGRGIMGNGGNGFGQGMGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFS 480

Query: 512 GILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWG 571
           GILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWG
Sbjct: 481 GILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWG 540

Query: 572 SEEHGGGRADESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDD 631
           SEEHGGGRA ESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRD 
Sbjct: 541 SEEHGGGRAGESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRD- 600

Query: 632 RDVGYDRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRD 691
                DRERSKEKD GPDHDWPDRRPRDDRDIGRERDKDRDRDRD+ERSRDYERGHHDRD
Sbjct: 601 -----DRERSKEKDLGPDHDWPDRRPRDDRDIGRERDKDRDRDRDKERSRDYERGHHDRD 660

Query: 692 RERDRDRDRDRYKEDRDRFSDHHRYRDREPEHEEDWDRGRSSRTHSKSRLSQEEENRSRS 751
           R+RDRDRDRDRYKEDRDR+SDHHRYRDREPEH+EDW+RGRSSRTHSKSRL QEEENRSR+
Sbjct: 661 RDRDRDRDRDRYKEDRDRYSDHHRYRDREPEHDEDWERGRSSRTHSKSRLPQEEENRSRT 720

Query: 752 RDADYGKRRRLTSE 762
           RDADYGKRRRLTSE
Sbjct: 721 RDADYGKRRRLTSE 722

[Close]

BLAST of CmUC09G180770 vs. ExPASy TrEMBL
Match: A0A6J1CCR1 (cleavage and polyadenylation specificity factor subunit 6 OS=Momordica charantia OX=3673 GN=LOC111010455 PE=4 SV=1)

HSP 1 Score: 1198.0 bits (3098), Expect = 0.0e+00
Identity = 645/731 (88.24%), Postives = 673/731 (92.07%), Query Frame = 0


Query: 32  MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 91
           MDEGEGGFGEGVDQIDQFHRNEAISAVAD+GFLGEDEDEYEDLYNDVNVGEGFLQSLRKN
Sbjct: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADEGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 92  DDLGFKSEEE-PKMEPPAPVPPSSGASIPGIGGGVTEVAGLEDGGRSVSERVTEGYNQIP 151
           DDLGF++EEE PK+EPPA + PSSGASIPG+GGG TEVA L DGG SV ERVTEGYNQIP
Sbjct: 61  DDLGFRNEEEPPKIEPPATLAPSSGASIPGVGGGATEVASLGDGGHSVPERVTEGYNQIP 120

Query: 152 DLRANEMAIRGGVGSGPPVAGGGGIRVELGQGSKNNELEERSSNNVAPHQAQPHPQPQPQ 211
           DLR NEMA+RGG GSGPP+ GGGGIRVELGQGSK NELEERSSNNVA HQA   PQPQPQ
Sbjct: 121 DLRTNEMAMRGGAGSGPPMGGGGGIRVELGQGSKTNELEERSSNNVAVHQAPQQPQPQPQ 180

Query: 212 PQTQIQTHPQPQPQPQPQPQPQHLQQPSQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNG 271
                      Q Q Q QPQ QH  QP  SGVLGNPGSVEN+GLLRQ GGVNVNGVGGNG
Sbjct: 181 -----------QQQQQQQPQ-QHHHQPLHSGVLGNPGSVENDGLLRQ-GGVNVNGVGGNG 240

Query: 272 FGNMGSAGGSGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQV 331
           +GNMGSAGG GGGTILFVGDLHWWTTDAELE ELCKYGPLKEVKF+DEKASGKSKGYCQV
Sbjct: 241 YGNMGSAGGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGYCQV 300

Query: 332 EFYDPSAATACKEGMNGHIFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRG 391
           EFYDPSAATACKEGMNGH+FNGRPCVVA+ASPFSVK+MGEAQVNRNQQ++QA NPQARRG
Sbjct: 301 EFYDPSAATACKEGMNGHVFNGRPCVVAFASPFSVKKMGEAQVNRNQQIAQAANPQARRG 360

Query: 392 PNDAVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGR 451
           PNDAVGKIGGS+I TGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMR+RGGGMGGR
Sbjct: 361 PNDAVGKIGGSNIQTGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRNRGGGMGGR 420

Query: 452 GIMGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGIL 511
           GIMGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGIL
Sbjct: 421 GIMGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGIL 480

Query: 512 SSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEE 571
           SSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMM  SGVDGPNMGMWSDPSMGGWGSEE
Sbjct: 481 SSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMAPSGVDGPNMGMWSDPSMGGWGSEE 540

Query: 572 HGGGRADESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRDV 631
           HGGGRA ESSYGEEAGSDQQYGEGSH+RG WANSAKEKDRGSERDWSQSSDRRYRD    
Sbjct: 541 HGGGRAGESSYGEEAGSDQQYGEGSHDRGGWANSAKEKDRGSERDWSQSSDRRYRD---- 600

Query: 632 GYDRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRER 691
             DRERSKEKDPGPDHDW DRRPRDDRD+GRERDK  DRDRDRE SRDYERGH   DR+R
Sbjct: 601 --DRERSKEKDPGPDHDWQDRRPRDDRDVGRERDK--DRDRDRELSRDYERGH---DRDR 660

Query: 692 DRDRDRDRYKEDRDRFSDHHRYRDREPEHEEDWDRGRSSRTHSKSRLSQEEENRSRSRDA 751
           DRDRDRDR+KEDRDR+SDHHRYRDREPEHE++W+RGRSSRTHSKSRL QEEE+RSRSRDA
Sbjct: 661 DRDRDRDRHKEDRDRYSDHHRYRDREPEHEDEWERGRSSRTHSKSRLPQEEESRSRSRDA 707

Query: 752 DYGKRRRLTSE 762
           DYGKRRRLTS+
Sbjct: 721 DYGKRRRLTSD 707

[Close]

BLAST of CmUC09G180770 vs. TAIR 10
Match: AT5G55670.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 668.7 bits (1724), Expect = 5.6e-192
Identity = 435/758 (57.39%), Postives = 525/758 (69.26%), Query Frame = 0


Query: 32  MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDE-DEYEDLYNDVNVGEGFLQSLRK 91
           MDEG+G      DQ+DQFH+NEAISAVADDGF+ E+E D+YEDLYNDVNVGEGFLQS++K
Sbjct: 1   MDEGDGR-----DQMDQFHQNEAISAVADDGFMAEEEDDDYEDLYNDVNVGEGFLQSMKK 60

Query: 92  NDDLGFKSEEEPK--MEPPAPVPPSSG-----ASIPG-IGGGVTEVAGLEDGGRSVSER- 151
           ND+ G ++EE+ K  ME    V P  G      SIPG +G  V + A  E GG       
Sbjct: 61  NDEAGSRNEEKEKVNMEEEDRVEPVLGEAEVSISIPGLVGESVEKEAEAESGGGGSGSGT 120

Query: 152 ----VTEGYNQIPDLRANEMA--IRGGVGSGPPVAGGGGIRVELGQGS-KNNELEERSSN 211
                + GY    +++ ++++  I GG+G+G     GGG+RVELGQ S + N+LE    N
Sbjct: 121 DVVVASSGYG-AQEVKVSDVSQEIPGGIGTGT----GGGLRVELGQASNRANDLEAPRGN 180

Query: 212 NVAPHQAQPHPQPQPQPQTQIQTHPQPQPQPQPQPQPQHLQQPSQSGVLGNPGSVENEGL 271
           N++                         P P      ++L +P    V G         +
Sbjct: 181 NISQGLL---------------------PPPPVLGNNENLMRPVMGNVNGGIPPGPGSNM 240

Query: 272 LRQGGGVNVNGVGGNGFGNMGSAGGSGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVK 331
           +  G  + + GV G G G     GG GGG  LFVGDLHWWTTDAELEAELCKYG +KEVK
Sbjct: 241 VGNGANIAMPGVVGGGTG-----GGGGGGAFLFVGDLHWWTTDAELEAELCKYGAVKEVK 300

Query: 332 FYDEKASGKSKGYCQVEFYDPSAATACKEGMNGHIFNGRPCVVAYASPFSVKRMGEAQVN 391
           F+DEKASGKSKGYCQVEFYDP AA+ACK+ +NG+ FNGRPCVV YASP+SVKRMGEAQVN
Sbjct: 301 FFDEKASGKSKGYCQVEFYDPVAASACKDALNGYPFNGRPCVVEYASPYSVKRMGEAQVN 360

Query: 392 RNQQMSQATNPQARRGPNDAVGK-------IGGSSIATGGNYQGGDNNRGSGRGNWGRGN 451
           R QQ         R GP D   K          ++ A GGN+QGG+ NRG GRGNWGRGN
Sbjct: 361 RTQQAQSVIAQAKRGGPADPPSKPLVANNNNNNNNNAIGGNFQGGE-NRGFGRGNWGRGN 420

Query: 452 AHGMGGRGPAGPMRSRGGGMGGRGIMGNGGNGFGQGIGATPPL-LHPQSMMGQGFDPSFG 511
           A GMGGRGP GPMR+R  GMGGRG+MGNG  GFGQG+G  PP+ +  Q MMGQGF+ +FG
Sbjct: 421 AQGMGGRGPGGPMRNRPNGMGGRGLMGNG--GFGQGMGTGPPMNMMHQPMMGQGFEQAFG 480

Query: 512 APMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMP 571
            PM RMG YGGFPGAP P F G+LSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMP
Sbjct: 481 GPMARMGGYGGFPGAPGPQFPGLLSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMP 540

Query: 572 TSGVD-GPNMGMWSDPSMGGWGS-EEHGGGRADESSYGEEAGSDQQYGEGSHERGAWANS 631
            +GVD G NMGMW DP+ GGWG+ E+ G GRA ESSYGEEA SD QYGE +HERGA  N 
Sbjct: 541 NAGVDGGHNMGMW-DPNSGGWGAGEDLGSGRAAESSYGEEAASDHQYGEVNHERGARPNP 600

Query: 632 AKEKDRGSERDWSQSSDRRYRDDRDVGYDRERSKEKDPGPDHDWPDRRPRDDRDIGRERD 691
            KEK+R SER+WS SSDRR R+D+D GY+R+  +EKD G  +D P+RR RDDRD GRER+
Sbjct: 601 VKEKERASEREWSGSSDRRNREDKDAGYERDIPREKDVGHGYDMPERRHRDDRDTGRERE 660

Query: 692 KDRDRDRDRERSRDYERGHHDRDRERDRDRDRDRYKEDRDRFSDHHRYRDR-EPEHEEDW 751
           ++    +DRERSR+     H RDRE  R+R+RDR++E+R+R+   HR R R EPEH+E+W
Sbjct: 661 REH-HHKDRERSRE-----HVRDRE--RERERDRHREERERYGGDHRTRHRDEPEHDEEW 710

Query: 752 DRGRSSRTHSKSRLSQEEENRSRSRDADYGKRRRLTSE 762
           +RGRSSR H+KSRLS+E+ +RS+SRD DYGKRRRLT+E
Sbjct: 721 NRGRSSRGHNKSRLSREDNHRSKSRDTDYGKRRRLTTE 710

[Close]

BLAST of CmUC09G180770 vs. TAIR 10
Match: AT5G55670.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 447.2 bits (1149), Expect = 2.6e-125
Identity = 341/755 (45.17%), Postives = 420/755 (55.63%), Query Frame = 0


Query: 32  MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDE-DEYEDLYNDVNVGEGFLQSLRK 91
           MDEG+G      DQ+DQFH+NEAISAVADDGF+ E+E D+YEDLYNDVNVGEGFLQS++K
Sbjct: 1   MDEGDGR-----DQMDQFHQNEAISAVADDGFMAEEEDDDYEDLYNDVNVGEGFLQSMKK 60

Query: 92  NDDLGFKSEEEPK--MEPPAPVPPSSG-----ASIPG-IGGGVTEVAGLEDGGRSVSER- 151
           ND+ G ++EE+ K  ME    V P  G      SIPG +G  V + A  E GG       
Sbjct: 61  NDEAGSRNEEKEKVNMEEEDRVEPVLGEAEVSISIPGLVGESVEKEAEAESGGGGSGSGT 120

Query: 152 ----VTEGYNQIPDLRANEMA--IRGGVGSGPPVAGGGGIRVELGQGS-KNNELEERSSN 211
                + GY    +++ ++++  I GG+G+G     GGG+RVELGQ S + N+LE    N
Sbjct: 121 DVVVASSGYG-AQEVKVSDVSQEIPGGIGTGT----GGGLRVELGQASNRANDLEAPRGN 180

Query: 212 NVAPHQAQPHPQPQPQPQTQIQTHPQPQPQPQPQPQPQHLQQPSQSGVLGNPGSVENEGL 271
           N++                         P P      ++L +P    V G         +
Sbjct: 181 NISQGLL---------------------PPPPVLGNNENLMRPVMGNVNGGIPPGPGSNM 240

Query: 272 LRQGGGVNVNGVGGNGFGNMGSAGGSGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVK 331
           +  G  + + GV G G G     GG GGG  LFVGDLHWWTTDAELEAELCKYG +KEVK
Sbjct: 241 VGNGANIAMPGVVGGGTG-----GGGGGGAFLFVGDLHWWTTDAELEAELCKYGAVKEVK 300

Query: 332 FYDEKASGKSKGYCQVEFYDPSAATACKEGMNGHIFNGRPCVVAYASPFSVKRMGEAQVN 391
           F+DEKASGKSKGYCQVEFYDP AA+ACK+ +NG+ FNGRPCVV YASP+SVKRMGEAQVN
Sbjct: 301 FFDEKASGKSKGYCQVEFYDPVAASACKDALNGYPFNGRPCVVEYASPYSVKRMGEAQVN 360

Query: 392 RNQQMSQATNPQARRGPNDAVGK-------IGGSSIATGGNYQGGDNNRGSGRGNWGRGN 451
           R QQ         R GP D   K          ++ A GGN+QGG+ NRG GRGNWGRGN
Sbjct: 361 RTQQAQSVIAQAKRGGPADPPSKPLVANNNNNNNNNAIGGNFQGGE-NRGFGRGNWGRGN 420

Query: 452 AHGMGGRGPAGPMRSRGGGMGGRGIMGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGA 511
           A GMGGRGP GPMR+R  GM                                        
Sbjct: 421 AQGMGGRGPGGPMRNRPNGM---------------------------------------- 480

Query: 512 PMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPT 571
                                                                       
Sbjct: 481 ------------------------------------------------------------ 540

Query: 572 SGVDGPNMGMWSDPSMGGWGSEEHGGGRADESSYGEEAGSDQQYGEGSHERGAWANSAKE 631
                                    GGRA ESSYGEEA SD QYGE +HERGA  N  KE
Sbjct: 541 -------------------------GGRAAESSYGEEAASDHQYGEVNHERGARPNPVKE 585

Query: 632 KDRGSERDWSQSSDRRYRDDRDVGYDRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDR 691
           K+R SER+WS SSDRR R+D+D GY+R+  +EKD G  +D P+RR RDDRD GRER+++ 
Sbjct: 601 KERASEREWSGSSDRRNREDKDAGYERDIPREKDVGHGYDMPERRHRDDRDTGREREREH 585

Query: 692 DRDRDRERSRDYERGHHDRDRERDRDRDRDRYKEDRDRFSDHHRYRDR-EPEHEEDWDRG 751
              +DRERSR+     H RDRE  R+R+RDR++E+R+R+   HR R R EPEH+E+W+RG
Sbjct: 661 -HHKDRERSRE-----HVRDRE--RERERDRHREERERYGGDHRTRHRDEPEHDEEWNRG 585

Query: 752 RSSRTHSKSRLSQEEENRSRSRDADYGKRRRLTSE 762
           RSSR H+KSRLS+E+ +RS+SRD DYGKRRRLT+E
Sbjct: 721 RSSRGHNKSRLSREDNHRSKSRDTDYGKRRRLTTE 585

[Close]

BLAST of CmUC09G180770 vs. TAIR 10
Match: AT1G13190.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 227.6 bits (579), Expect = 3.3e-59
Identity = 265/728 (36.40%), Postives = 352/728 (48.35%), Query Frame = 0


Query: 55  ISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKNDDLGFKSEEEPKMEPPAPVPPSS 114
           I A+AD+  +G D+DEY+DLY+DVNVGE F           F++  +P  +PPA V  +S
Sbjct: 21  IPALADEELMG-DDDEYDDLYSDVNVGESF-----------FQAHNQP--QPPAQV-NTS 80

Query: 115 GASIPGIGGGVTEV--AGLEDGGRSVSE-RVTEGYNQI--PDLRANEMAIRGGVGSGPPV 174
            AS+      V      G+  GG    + R   G+N I  PD R++        G     
Sbjct: 81  NASLQAQNSHVAAEPRMGIVSGGTVEGKYRNDGGHNGISGPDTRSDVYPQASSFG----- 140

Query: 175 AGGGGIRVELG----QGSKNNELEER--SSNNVAPHQAQPHPQPQPQPQTQIQTHPQPQP 234
           A G  I ++      QGS    L     S N V   +   H      PQ   Q    P  
Sbjct: 141 AKGLNIDIQSNKIAQQGSTTVVLNNHGFSGNAVNVPEMPVHNSYGAPPQGAQQI---PVS 200

Query: 235 QPQPQPQPQHLQQPSQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGNMGSAGGSGGG 294
           Q    P     + P+QS V+ N                                    G 
Sbjct: 201 QMSVNPNVMMNKSPTQSFVVDN------------------------------------GN 260

Query: 295 TILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATACKE 354
           T+LFVG+LHWWTTDAE+E+ L +YG +KE+KF+DE+ SGKSKGYCQVEFYD +AA ACKE
Sbjct: 261 TMLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKE 320

Query: 355 GMNGHIFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRGPNDAVGKIGGSSI 414
           GMNG IFNG+ CVVA+ASP ++K+MG     RNQ  +Q  N   RR  N+ +G+  G++ 
Sbjct: 321 GMNGFIFNGKACVVAFASPETLKQMGANFTGRNQGQNQIQN---RRPLNEGMGR--GNNN 380

Query: 415 ATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRGI----MGNGGNG 474
               N Q GD  R  GRG + RG   GMG RG A      GG M GRG+     G+G   
Sbjct: 381 NNNMNTQNGDGGRNYGRGGFARG-GQGMGNRGGAW-----GGAMRGRGVNNMASGSGAGP 440

Query: 475 FGQGIG--ATPPLLHPQSMMGQ-GFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPV 534
           +G G+   A   ++HPQ MMG  GFDP+F   MGR   YGG+ G   P   G+  S+P V
Sbjct: 441 YGPGLAGPAFGGMMHPQGMMGAGGFDPTF---MGRGAGYGGYSGIAYP---GMPHSYPGV 500

Query: 535 GGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPN-MGMWSDPSMGGWGSEEHG--- 594
             +G+ G+APHVNPAFFG      GMG M +SG++G +   MWS+ +  G G EE G   
Sbjct: 501 NAMGMVGIAPHVNPAFFG-----TGMGTMGSSGMNGVHAAAMWSEAN--GGGGEEGGSEY 560

Query: 595 GGRADESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRG-SERDWSQSS-DRRYRDDRDV 654
           GG  DE+   EE  S                  ++K+R  +ERDWS++S DRR++  R+ 
Sbjct: 561 GGYEDETQEKEEKPS------------------RDKERATTERDWSENSGDRRHKSHRE- 571

Query: 655 GYDRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRER 714
                                          E+D  R+                      
Sbjct: 621 -------------------------------EKDSHRE---------------------- 571

Query: 715 DRDRDRDRYKEDRDRFSDHHRYRDREPEHEEDWDRGRSS-RTHSKSRLSQEEENRSRSRD 758
                   YK+ RDR SD             ++DRG+SS ++ S+SR+S E+++RSRSRD
Sbjct: 681 --------YKQQRDRDSD-------------EFDRGQSSLKSRSRSRMS-EDDHRSRSRD 571

[Close]

BLAST of CmUC09G180770 vs. TAIR 10
Match: AT1G60900.1 (U2 snRNP auxilliary factor, large subunit, splicing factor )

HSP 1 Score: 46.6 bits (109), Expect = 1.0e-04
Identity = 59/152 (38.82%), Postives = 75/152 (49.34%), Query Frame = 0


Query: 606 KEKDRGSERDWSQSSDRRYRDDRDVGYDRERSKEKDPGPDHDWPDRRPRDDRDIGRERDK 665
           K+  + SE+D     D+    DRD   DR+R K +D                   R+R+K
Sbjct: 44  KDSSKISEKDNENGRDKDGNKDRDREKDRDREKSRD-------------------RDREK 103

Query: 666 DRDRDRDRERSRDYERGHHDRDRERDRDRDRDRYKEDRDRFSDHH-RYRDREPEHEEDWD 725
            RDRDRDRERS+D +R  H RDR RDR R+R   ++D D   DHH R RDR+     D D
Sbjct: 104 SRDRDRDRERSKDRQRDRHHRDRHRDRSRERSEKRDDLD--DDHHRRSRDRDRRRSRDRD 163

Query: 726 RGRSSRTHSKSRLSQEEENRSRSRDADYGKRR 757
           R    R  S+SR     E RSRS      + R
Sbjct: 164 REVRHRRRSRSRSRSRSERRSRSEHRHKSEHR 174

The following BLAST results are available for this feature:

BLAST of CmUC09G180770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897335.1	0.0e+00	93.56	cleavage and polyadenylation specificity factor subunit 6-like [Benincasa hispid...	[more]
XP_038897113.1	0.0e+00	92.33	uncharacterized PE-PGRS family protein PE_PGRS46-like [Benincasa hispida]	[more]
XP_031744545.1	0.0e+00	92.20	cleavage and polyadenylation specificity factor subunit CG7185-like [Cucumis sat...	[more]
XP_031744552.1	0.0e+00	91.61	cleavage and polyadenylation specificity factor subunit CG7185 [Cucumis sativus]...	[more]
TYK07956.1	0.0e+00	91.27	cleavage and polyadenylation specificity factor subunit 6 [Cucumis melo var. mak...	[more]

BLAST of CmUC09G180770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZR40	5.0e-04	45.00	Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia OX=4092 GN=U2A...	[more]

BLAST of CmUC09G180770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3G6	0.0e+00	91.24	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G104800 PE=4 SV...	[more]
A0A5D3CC60	0.0e+00	91.27	Cleavage and polyadenylation specificity factor subunit 6 OS=Cucumis melo var. m...	[more]
A0A6J1F726	0.0e+00	90.74	cleavage and polyadenylation specificity factor subunit CG7185-like OS=Cucurbita...	[more]
A0A6J1ILS2	0.0e+00	90.60	cleavage and polyadenylation specificity factor subunit 6-like OS=Cucurbita maxi...	[more]
A0A6J1CCR1	0.0e+00	88.24	cleavage and polyadenylation specificity factor subunit 6 OS=Momordica charantia...	[more]

BLAST of CmUC09G180770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55670.1	5.6e-192	57.39	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G55670.2	2.6e-125	45.17	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G13190.1	3.3e-59	36.40	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G60900.1	1.0e-04	38.82	U2 snRNP auxilliary factor, large subunit, splicing factor	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 285..358 e-value: 9.2E-20 score: 81.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 286..355 e-value: 1.3E-13 score: 50.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 284..362 score: 13.61777
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 194..378 e-value: 1.1E-23 score: 85.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 403..421
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..257
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 202..232
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 551..761
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 186..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 372..485
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 600..761
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 372..388
None	No IPR available	PANTHER	PTHR23204:SF9	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6-LIKE	coord: 32..760
None	No IPR available	CDD	cd12372	RRM_CFIm68_CFIm59	coord: 286..359 e-value: 5.73799E-34 score: 122.404
IPR034772	CPSF6/7 family	PANTHER	PTHR23204	CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR	coord: 32..760
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 282..380

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC09G180770.1	CmUC09G180770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding