CmUC09G180720 (gene) Watermelon (USVL531) v1

Overview
NameCmUC09G180720
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionmRNA decay activator protein ZFP36L2-like isoform X2
LocationCmU531Chr09: 36134801 .. 36138085 (-)
RNA-Seq ExpressionCmUC09G180720
SyntenyCmUC09G180720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATTTTATTAGTTTTTTTGTATGAACAAGAATTTTAAATTTCAAGTAGATAAATCAAACAAGGGTTTGTACACCATCTAGGGTGCAGGTGGGACTTGTAAGTGGAGGTCTCGTGTAGTCAAGTTGCAAGGTTGTAATATATTGAAGATCACAAAATATGTAAGTGTGTACACAGGTTGCATTAGAATTTTAAATCATGACCACATGGAAGCAAATGCTATGGTTATCATACAGATAATGAAATACAAGTACACAAGTATAAGTTGAGTATATAAACCTCATCAAATTATTAAGAACATGAGGCAATAGTACGATAAAATGTGGCATGCAAGGAAAACAACATATGCTCTTGCCAAGGATTTTCCAAAAGATTCGTACGCCATACTCCATATTTTAATTTCAGGAAAGGGTAACCAATATATTTCACTTCATCATTGTATTATAGTTAGAAAGTTGGTAGGAAATTGATGGGATTTCTATGAAAGATGATAGTTATTACTGAAATTTTATTCAATTGGAAAGTTCTAAAAATTTTATTAACCTTTGAACTGGCAATCTTAAAAGGGTATACTTTTGAATGTTTAATTTTGTGTCATGATAAGTCTTCAAATTTTCAATTTTTAAATAACTTTATGAATGTTTAAATGTGTGTTTAACAAGTCGGTCATTGATCTTGCTGTCATTATTTAAAATTTATGAACCAAAGTTTAGAGTATCATTAAACATAATAATTCAAATTTAAATCTAATAAATTAGTTAATTTTAAAATACTTTAAACAAGTCAAAAATTCATTAGATATTTTTAGAGTCTAAGACCTTTTAGCCTGAAGATTGAAAATTTGAAATTTTTTTAAAACACTTTTTAGGAATTAGGGACTAAAATAGGCAAATTCAGAAATTGGAGTAAACTTGTAATTTTACGAATATTTTATCAACAACAAAATATGGATTTTAGTTGACACATAATGATATTATATGTAGTTGATTTGGTTTTGAATTGTGGTTGTTCAGTAATGTCGTTCCTACTCCACTTCCAAACTTCGAATTCAAGAATTCATGCTCATTTTCCTTCCAAAGAAGAAATATGACTCTTAATCTCTCTCTCTCAAATCGGAGTCTCTCAACGGCGGATTCAATCGTAGGCTCCATACAATCTGTCGGTTCCAAGTGTTGAAGAACGGGTTGTCGACGTCGTTACCGCCATGATCAACAATCAGTGTTGCAATTAAGAGGTAATTACTCTCGTTTTCATGCTCTCGCTTCTTCGTATATTGCATAGCAACTCCTGTTAAATCCTCCATTCTTACGCTTTCTTTGATTTTAATCGCTGATTTTGACGTAATCATGCTCTAATACATTATCTATTTTGCATCTATACTTCGATTGAAGAAAGCTTGTTGCTTGTATCTCTATCAGCTTTCCGTCCGTCTTTCTTAGACTATTGCATCAGGCCTTCTCTTACGACTCTGTCTCAGTCCAGGCTTTATCAAAACAAAATGTCGTTCCGTATCGGTAAGATTGCGAGGTTCATTTTCTTTCTTCATTTCCTTGATTTAATCCTCTTTCAATAGGTTTGTTTTATCTTATTCATGACTTATGTCCACCAACTGTTTGAGTAAATTCGACAATGAAAAAATAGGAAAATATTAGGAGAAATACAGAGGAAGAAAGCTCAGTTGTTTTAGTCTTATGATTGAAAGGTTATGCTACTTTTAAGCTGAGAATGTATTGAGTTGAAGATACTTTGCTATAGGGAACATGAACAACTACCACGTTGAAAATATTATCAAATGCACATGCTTTTTTTTTCAAAATAGACTGCATGAATACAAATTAGGGTAAAATATTATTCAACCGTTTTTTTTCCACTTGATTGATTCTAGTTTCTAACTTTGAACTTGTTGAAAGTCGAAACTAATTTTACAACTGTTTTATAGATTTTGCTTGTAGAATGCCATTTTGAATTTTGTACTTTGATGCTTACATTTGCACTTTCAATCACCGCAGACTTTTGGCTTTCACAAAGTTTAGTGTCTCCAGCCGAAGGTTTGCTTGCTCCTTTGTTGGTTCATAAAACTAATTTCTGGTTTCTTGGGATTGTTGCTAGTTACTTTGCTGATTGACTTTAAGCTTTCTATCAATATTAAATTTTAGTTCTCTCTCTTTTTTTTTTAGAATCTATGACATCGACCTTGTTTTTGCTTTCTAGGTGTAATTATGTAAGGTTTTAATTATAGCAATCTGTAGTAATTCATATATTTCTTCCTTACAGGTAAAGGAGCTGAAAGACTAGGAAAGGACAAAGCATTTGCATTCAACATTGAAACAAAAGGTTAATAAACTTATATTTGGATTATTGTTTGGGACATTAGATGTTCTCTTTTTTTTTTGTTTTTTTTGGTTTGATTTTCTAAATGTGATATGATTTTAGGACCATTTGGATTATGTTCTTCCTACCATACTTAGACTTAGGATTAATGACTTTGAGTATATAATTAGTTTAGGTTAACGTATAATTTCAGCCTTGAACTTTATCTCTATGGTTTGGGTCAAGATTTGAGGTTTTATTTACAGTCTTGGAGTGGCTCTAGAGTTGTGTATGATGTATTGCAAATTCTTTATGGAAATTAATTATATATGAGGTTAATAATATGGATTTAATCTTTATGGTTTAGACATAGTTTTGATTTGGTAGATAGAGTGTAGTGTGAGGGAGATATGGGAGCTTGTAGAATTTTAGTTTTTGTTTCTGTTTATGAATGAGGGTTTATAAGCAATAGTGGTACACTTCACTTTGCATTCTGGTTGAATGTTTCAGTTTCATCTCTCTTCTCCACTTTAGCATCTCAATCTTTTGTTCATATTCATCTTTTGTTATCTCTGTAAATTTAATTCACCGAATTCTTTGGAGAGTACTGGATCATGATTTGCTACAATCAGTAAATCTCTATTTTGTACTAGCCTACATAGCCGATGAAAACATCTAAATGCTGATAGATTCTGTTCTTTGTGCATCAATTGTTATTATTAAGTTTATCATTTTAACTTGGAGATTTCAGGTTCATGGAAGATCGACAAGGCAAAAGGAGCTCTAAAACATCCATTATCAAAGGCCTTCAGCTGATAAACAGTCAGATGGACTATCACTTAGTAGTCGGGGAAACCAGACACTATCACCAGGAAACAAACTGTAAAAGCCCAACAATCATCGATCGTTACACTATTATGAATCACTATGCTAGAGCATTTCTGGAAGCAATAGCTTCAATTCTCGGGGAATAG

mRNA sequence

ATGAGTAATGTCGTTCCTACTCCACTTCCAAACTTCGAATTCAAGAATTCATGCTCATTTTCCTTCCAAAGAAGAAATATGACTCTTAATCTCTCTCTCTCAAATCGGAGTCTCTCAACGGCGGATTCAATCGTAGGCTCCATACAATCTGTCGGTTCCAAAACGGGTTGTCGACGTCGTTACCGCCATGATCAACAATCAGTGTTGCAATTAAGAGAAAGCTTGTTGCTTGTATCTCTATCAGCTTTCCGTCCGTCTTTCTTAGACTATTGCATCAGGCCTTCTCTTACGACTCTGTCTCAGTCCAGGCTTTATCAAAACAAAATGTCGTTCCGTATCGGTAAAGGAGCTGAAAGACTAGGAAAGGACAAAGCATTTGCATTCAACATTGAAACAAAAGTTTCATCTCTCTTCTCCACTTTAGCATCTCAATCTTTTGTTCATATTCATCTTTTGTTATCTCTGTTCATGGAAGATCGACAAGGCAAAAGGAGCTCTAAAACATCCATTATCAAAGGCCTTCAGCTGATAAACAGTCAGATGGACTATCACTTAGTAGTCGGGGAAACCAGACACTATCACCAGGAAACAAACTGTAAAAGCCCAACAATCATCGATCGTTACACTATTATGAATCACTATGCTAGAGCATTTCTGGAAGCAATAGCTTCAATTCTCGGGGAATAG

Coding sequence (CDS)

ATGAGTAATGTCGTTCCTACTCCACTTCCAAACTTCGAATTCAAGAATTCATGCTCATTTTCCTTCCAAAGAAGAAATATGACTCTTAATCTCTCTCTCTCAAATCGGAGTCTCTCAACGGCGGATTCAATCGTAGGCTCCATACAATCTGTCGGTTCCAAAACGGGTTGTCGACGTCGTTACCGCCATGATCAACAATCAGTGTTGCAATTAAGAGAAAGCTTGTTGCTTGTATCTCTATCAGCTTTCCGTCCGTCTTTCTTAGACTATTGCATCAGGCCTTCTCTTACGACTCTGTCTCAGTCCAGGCTTTATCAAAACAAAATGTCGTTCCGTATCGGTAAAGGAGCTGAAAGACTAGGAAAGGACAAAGCATTTGCATTCAACATTGAAACAAAAGTTTCATCTCTCTTCTCCACTTTAGCATCTCAATCTTTTGTTCATATTCATCTTTTGTTATCTCTGTTCATGGAAGATCGACAAGGCAAAAGGAGCTCTAAAACATCCATTATCAAAGGCCTTCAGCTGATAAACAGTCAGATGGACTATCACTTAGTAGTCGGGGAAACCAGACACTATCACCAGGAAACAAACTGTAAAAGCCCAACAATCATCGATCGTTACACTATTATGAATCACTATGCTAGAGCATTTCTGGAAGCAATAGCTTCAATTCTCGGGGAATAG

Protein sequence

MSNVVPTPLPNFEFKNSCSFSFQRRNMTLNLSLSNRSLSTADSIVGSIQSVGSKTGCRRRYRHDQQSVLQLRESLLLVSLSAFRPSFLDYCIRPSLTTLSQSRLYQNKMSFRIGKGAERLGKDKAFAFNIETKVSSLFSTLASQSFVHIHLLLSLFMEDRQGKRSSKTSIIKGLQLINSQMDYHLVVGETRHYHQETNCKSPTIIDRYTIMNHYARAFLEAIASILGE
Homology
[Close]
BLAST of CmUC09G180720 vs. NCBI nr
Match: XP_038897010.1 (uncharacterized protein LOC120085195 [Benincasa hispida] >XP_038897011.1 uncharacterized protein LOC120085195 [Benincasa hispida])

HSP 1 Score: 104.4 bits (259), Expect = 1.3e-18
Identity = 50/63 (79.37%), Postives = 54/63 (85.71%), Query Frame = 0 

Query: 157 MEDRQGKRSSKTSIIKGLQL----INSQMDYHLVVGETRHYHQETNCKSPTIIDRYTIMN 216
           MEDRQGKRS+KTSIIKGL      IN QMD HLV+G TRHYHQETNC+SPTI+DRYTIMN
Sbjct: 1   MEDRQGKRSTKTSIIKGLNASVRPINIQMDNHLVIGGTRHYHQETNCRSPTIVDRYTIMN 60

[Close]
BLAST of CmUC09G180720 vs. NCBI nr
Match: XP_004148935.1 (uncharacterized protein LOC101215865 [Cucumis sativus] >XP_011658933.1 uncharacterized protein LOC101215865 [Cucumis sativus] >XP_031744249.1 uncharacterized protein LOC116404958 [Cucumis sativus] >XP_031744250.1 uncharacterized protein LOC116404958 [Cucumis sativus] >KAE8645918.1 hypothetical protein Csa_011889 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 1.9e-17
Identity = 49/63 (77.78%), Postives = 52/63 (82.54%), Query Frame = 0 

Query: 157 MEDRQGKRSSKTSIIKGLQL----INSQMDYHLVVGETRHYHQETNCKSPTIIDRYTIMN 216
           MEDRQGKRSSKTSIIKGL      +N QMD HLV+G TRHYHQETNCKSPTI+D Y IMN
Sbjct: 1   MEDRQGKRSSKTSIIKGLNASIRPMNIQMDNHLVIGGTRHYHQETNCKSPTIVDCYNIMN 60

[Close]
BLAST of CmUC09G180720 vs. NCBI nr
Match: TYK07952.1 (tristetraprolin-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 2.2e-16
Identity = 47/63 (74.60%), Postives = 51/63 (80.95%), Query Frame = 0 

Query: 157 MEDRQGKRSSKTSIIKGLQL----INSQMDYHLVVGETRHYHQETNCKSPTIIDRYTIMN 216
           MEDRQ KRSS+TSIIKGL      +N QMD HLV+G TRHYHQETNCKSPTI+D Y IMN
Sbjct: 1   MEDRQSKRSSRTSIIKGLNASIRPMNIQMDNHLVIGGTRHYHQETNCKSPTIVDCYNIMN 60

[Close]
BLAST of CmUC09G180720 vs. NCBI nr
Match: XP_022154583.1 (uncharacterized protein LOC111021811 [Momordica charantia] >XP_022154584.1 uncharacterized protein LOC111021811 [Momordica charantia])

HSP 1 Score: 85.9 bits (211), Expect = 5.0e-13
Identity = 42/57 (73.68%), Postives = 47/57 (82.46%), Query Frame = 0 

Query: 157 MEDRQGKRSSKTSIIKGLQL----INSQMDYHLVVGETRHYHQETNCKSPTIIDRYT 210
           ME RQGKRSSKTSIIKGL +    IN QMD HLV+G T HYHQETNCKSPT++DRY+
Sbjct: 1   MEGRQGKRSSKTSIIKGLNVTVPPINIQMDNHLVIGGTGHYHQETNCKSPTMLDRYS 57

[Close]
BLAST of CmUC09G180720 vs. NCBI nr
Match: XP_022974000.1 (mRNA decay activator protein ZFP36L2-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-10
Identity = 40/56 (71.43%), Postives = 43/56 (76.79%), Query Frame = 0 

Query: 157 MEDRQGKRSSKTSIIKGL----QLINSQMDYHLVVGETRHYHQETNCKSPTIIDRY 209
           MEDRQGKRSSK SIIKGL    + I  QMD HLV+G T HYHQETN K PTI+DRY
Sbjct: 1   MEDRQGKRSSKASIIKGLNPTVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRY 56

[Close]
BLAST of CmUC09G180720 vs. ExPASy TrEMBL
Match: A0A5D3C9H3 (Tristetraprolin-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00710 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.0e-16
Identity = 47/63 (74.60%), Postives = 51/63 (80.95%), Query Frame = 0 

Query: 157 MEDRQGKRSSKTSIIKGLQL----INSQMDYHLVVGETRHYHQETNCKSPTIIDRYTIMN 216
           MEDRQ KRSS+TSIIKGL      +N QMD HLV+G TRHYHQETNCKSPTI+D Y IMN
Sbjct: 1   MEDRQSKRSSRTSIIKGLNASIRPMNIQMDNHLVIGGTRHYHQETNCKSPTIVDCYNIMN 60

[Close]
BLAST of CmUC09G180720 vs. ExPASy TrEMBL
Match: A0A6J1DKP7 (uncharacterized protein LOC111021811 OS=Momordica charantia OX=3673 GN=LOC111021811 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.4e-13
Identity = 42/57 (73.68%), Postives = 47/57 (82.46%), Query Frame = 0 

Query: 157 MEDRQGKRSSKTSIIKGLQL----INSQMDYHLVVGETRHYHQETNCKSPTIIDRYT 210
           ME RQGKRSSKTSIIKGL +    IN QMD HLV+G T HYHQETNCKSPT++DRY+
Sbjct: 1   MEGRQGKRSSKTSIIKGLNVTVPPINIQMDNHLVIGGTGHYHQETNCKSPTMLDRYS 57

[Close]
BLAST of CmUC09G180720 vs. ExPASy TrEMBL
Match: A0A6J1IEX1 (uncharacterized protein LOC111472616 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472616 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.5e-11
Identity = 40/56 (71.43%), Postives = 43/56 (76.79%), Query Frame = 0 

Query: 157 MEDRQGKRSSKTSIIKGL----QLINSQMDYHLVVGETRHYHQETNCKSPTIIDRY 209
           MEDRQGKRSSK SIIKGL    + I  QMD HLV+G T HYHQETN K PTI+DRY
Sbjct: 1   MEDRQGKRSSKASIIKGLNPTVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRY 56

[Close]
BLAST of CmUC09G180720 vs. ExPASy TrEMBL
Match: A0A6J1ICT5 (mRNA decay activator protein ZFP36L2-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472616 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.5e-11
Identity = 40/56 (71.43%), Postives = 43/56 (76.79%), Query Frame = 0 

Query: 157 MEDRQGKRSSKTSIIKGL----QLINSQMDYHLVVGETRHYHQETNCKSPTIIDRY 209
           MEDRQGKRSSK SIIKGL    + I  QMD HLV+G T HYHQETN K PTI+DRY
Sbjct: 1   MEDRQGKRSSKASIIKGLNPTVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRY 56

[Close]
BLAST of CmUC09G180720 vs. ExPASy TrEMBL
Match: A0A6J1ICU5 (uncharacterized protein LOC111472626 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472626 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 8.5e-11
Identity = 40/56 (71.43%), Postives = 43/56 (76.79%), Query Frame = 0 

Query: 157 MEDRQGKRSSKTSIIKGL----QLINSQMDYHLVVGETRHYHQETNCKSPTIIDRY 209
           MEDRQGKRSSK SIIKGL    + I  QMD HLV+G T HYHQETN K PTI+DRY
Sbjct: 1   MEDRQGKRSSKPSIIKGLNPTVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRY 56

The following BLAST results are available for this feature:
BLAST of CmUC09G180720 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038897010.11.3e-1879.37uncharacterized protein LOC120085195 [Benincasa hispida] >XP_038897011.1 unchara... [more]
XP_004148935.11.9e-1777.78uncharacterized protein LOC101215865 [Cucumis sativus] >XP_011658933.1 uncharact... [more]
TYK07952.12.2e-1674.60tristetraprolin-like isoform X2 [Cucumis melo var. makuwa][more]
XP_022154583.15.0e-1373.68uncharacterized protein LOC111021811 [Momordica charantia] >XP_022154584.1 uncha... [more]
XP_022974000.11.4e-1071.43mRNA decay activator protein ZFP36L2-like isoform X2 [Cucurbita maxima][more]
BLAST of CmUC09G180720 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC09G180720 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C9H31.0e-1674.60Tristetraprolin-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A6J1DKP72.4e-1373.68uncharacterized protein LOC111021811 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
A0A6J1IEX16.5e-1171.43uncharacterized protein LOC111472616 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1ICT56.5e-1171.43mRNA decay activator protein ZFP36L2-like isoform X2 OS=Cucurbita maxima OX=3661... [more]
A0A6J1ICU58.5e-1171.43uncharacterized protein LOC111472626 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
BLAST of CmUC09G180720 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC09G180720.1CmUC09G180720.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
molecular_function GO:0046872 metal ion binding