CmUC09G179950 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC09G179950
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	40S ribosomal protein S23
Location	CmU531Chr09: 35376922 .. 35379893 (-)
RNA-Seq Expression	CmUC09G179950
Synteny	CmUC09G179950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGTATATATATAATATCCGTCCCGCAATTCCATTGCGATTAGGGTTTGAGTTACCGCCAATCACAGTCGGTCTCCGCACTCTGCTTTCGAATTTGGGCGTTTCTGGAAGAAGTTGCAGCATCTTCCTTAATCCGCCATCATGGGGTATGCATTTCTCTCTTCTCTGCATCGTCTTTTCTTCCATGGCGTTTTTATCTTCTTCATCTTCATCCAATTATGTTCTCTCTCTCTCGAAGTTGTTCATATTGTTTGTTGAAATTTTATGAACAAACAAACGGAAGTGGAACTACTTTGAACAAGTGTTATTTCGTTCAGATCTTTGATTTTAAACTGGCTGGTTGTTTAGGATATTAAACTGGAAATTGTAAATCAGGAGAATGGTATTTCGAGGACTTTGTTAACTGAAAGATACAATCGATTGTTGAGCCATTAGTTGAATATCTCTTGTCGAGCGAAATGTCTTGGTTTAAAACATGTATTGATACTTTGTAGTTGGTTTATCGATTAACCGATAGGCTCGGAGTTATGGATAATCTGTTTTTTCTGATTCCTACCGTTGCATGTGCATATGGTTGGACGAATTTATTCATATAATATCGGTGGAAACAGCTTTCGAAATTCATATTCTAAGCTTAAATACTGTTGTTGATAGTCTCTCTCTCCGAAATTTCGAGAATTTATTTTGTTCCCCCCATTTCGATCAAGTTCTGATTCAGTTTTATGGTCCTGATTGCATACAATTTTCACATGCTAATGAAGCTTTGTCAATATGCTACTTTTTTTTAATTTCCAACTTTTCTTAATTTTCAGTCTTATTTTCAATTTAAAACTTTCATTTTCAAAGAAATTGAATTTGAAAAAACCACAAAAGAATCTATTTTTATGTTTAACCTAATTCAAGCTTTTTTTATTAAATTTTCACATCATTTCACCTCAAAATATTTTTGAATTCTATGTTATATTGTAATTAATTTTCAATTATTTTAAAAAAAATTTTGTTCTCGAATTGACAGTTGTACATCTAAATGTTATCTAACTTTATTGAAATGATGAGTAAAAATAGTCAATTTAGTCTAATTAAACCTCAATCTAAGTTTCATTAACTAATTGTAACAATTTTCATCAATTTTCATAACGTTTCTTGAAATTTCCATCGATATTTCCAAAAGATTAGGACCTATTTCCATGGACATTGATATTTCGAACCTTGTTTGAGTTTTCTTGACACCAAAATGTTGTAAGGTTAGAGGGTTGTCCCATGAGATTAGTCGAGGTGCGTGTAAGCTGACTTGGACACTCACGAATATAAAAAACGAATTTTGAACATTGTTTACAACCTCCATACCTAATTTCTTGGGAGAGCTCTTGAGCTTAGATTTCTCATACTCAATCTCAATATGTAGATGCTGTGCTTCACTTTGGCTGGGTAGCCTTTCTTTCTCCGATTATCTATTTTGTTGTGGATTATATTTGGATAGTAAGAGTGGAAATACCTTTCTAAATTCATATACTAAGCTTGAATGATGGATATTATTGTTTGACAGTTTCTATATGTAATTCGTAGGAGGAGACATGAACATAGGTTCTTCATCCTCGTTGAGTTTCATATGCATGCTTTATATCTTAATATGTAGATTACATCATTTTTCTTCACATATGCTGAGAGTCTTTATCTTGGTAATGAGTGGATTACCAAGATAACCAGCTCCCATTCTTAGCTTAGCTGATTTACTCTTACTTTGTTCTTTAATTGTACAAATATATTCAACTCATAATTAGTTAGGATTTTCCCAAACCCTGCTATAGTAATGACTGAATTTATTTTGTTTGCATATCTTGCAGGAAGACTCGGGGAATGGGAGCTGGTCGTAAGTTGAAGTCGCACCGTAGAAGGCAGAGGTGGGCAGATAAGTCATATAAGAAATCTCATCTTGGTAATGAGTGGAAAAAGCCATTTGCAGGGTCATCTCATGCAAAAGGGATTGTGCTTGAAAAGATGTAAGGCTATTGATTCTTATGCTATTGTAGATGAATTTTGTTAATATTTATTAGTCTTGTGACAAAGTTGAATTTGCTAATACAGTGGAATTGAAGCCAAGCAGCCAAATTCTGCTATTAGAAAATGTGCTCGTGTTCAACTGATTAAAAATGGGAAGAAAATTGCTGCTTTTGTACCTAATGATGGCTGCCTCAATTATATTGAGGAAAATGTAAGTTTATCTAGTTTGCCTATGCTTTGAATTCTTAGTAACGTTTATGCTATTTTGTTGACCCAAATGTGCAAGGTTAGTTGTCCTATGAGATTTGTCAAGTGGGAGTAAGCTGATCCAAACATATAAAAGCATAAATTAAACCAAAAATGGGTTTCTCACATACTGGCAGTTGTAAAATTGTTACTGTTTTTTTTTTAAAAATTATTTTTTTGTTTTTTATTTTTTACTTTTTCTTAAATTACTAGTAAGCAAACTAGTCGAGGTTTTCACAAATAGGTTTCGAGGTTTCTCATATTCAGGTTTTGGGGGTTGTATCAATTTAAACCCTGAACTTTCACAAGTGTGTCGATTTAAACCCCAAATTAACAATTGTATCAAGTAAAATCCTAAACTTATATAATTATATCAATTTAAACCTTCCATTATATTTGAATTGAAGAACTAAACAATTATATTATATTAAAAAAATTGTTTTATTTTTGGAATTGTTGTGTGTTACAGGACGAGGTATTGATCGCGGGGTTCGGACGTAAGGGTCATGCTGTAGGAGATATTCCTGGTGTTAGGTTCAAGGTTGTTAAGGTTTCTGGTGTTTCTCTTCTGGCTCTCTTCAAAGAGAAGAAAGAAAAGCCAAGATCCTAGACATGTTTTTTTCTTACCTTTATATCAAATTTGATACTCTTAATTTTTATTTCTAACGACAGCACTGCCTTGTTATTTTTCATTCACATCACATTATTGATTCTCCATCCAAC

mRNA sequence

ATGCGGTATATATATAATATCCGTCCCGCAATTCCATTGCGATTAGGGTTTGAGTTACCGCCAATCACAGTCGGTCTCCGCACTCTGCTTTCGAATTTGGGCGTTTCTGGAAGAAGTTGCAGCATCTTCCTTAATCCGCCATCATGGGGTATGCATTTCTCTCTTCTCTGCATCGTCTTTTCTTCCATGGCGTTTTTATCTTCTTCATCTTCATCCAATTATGTTCTCTCTCTCTCGAAGTTGTTCATATTGAAGACTCGGGGAATGGGAGCTGGTCGTAAGTTGAAGTCGCACCGTAGAAGGCAGAGGTGGGCAGATAAGTCATATAAGAAATCTCATCTTGGTAATGAGTGGAAAAAGCCATTTGCAGGGTCATCTCATGCAAAAGGGATTGTGCTTGAAAAGATTGGAATTGAAGCCAAGCAGCCAAATTCTGCTATTAGAAAATGTGCTCGTGTTCAACTGATTAAAAATGGGAAGAAAATTGCTGCTTTTGTACCTAATGATGGCTGCCTCAATTATATTGAGGAAAATGACGAGGTATTGATCGCGGGGTTCGGACGTAAGGGTCATGCTGTAGGAGATATTCCTGGTGTTAGGTTCAAGGTTGTTAAGGTTTCTGGTGTTTCTCTTCTGGCTCTCTTCAAAGAGAAGAAAGAAAAGCCAAGATCCTAGACATGTTTTTTTCTTACCTTTATATCAAATTTGATACTCTTAATTTTTATTTCTAACGACAGCACTGCCTTGTTATTTTTCATTCACATCACATTATTGATTCTCCATCCAAC

Coding sequence (CDS)

ATGCGGTATATATATAATATCCGTCCCGCAATTCCATTGCGATTAGGGTTTGAGTTACCGCCAATCACAGTCGGTCTCCGCACTCTGCTTTCGAATTTGGGCGTTTCTGGAAGAAGTTGCAGCATCTTCCTTAATCCGCCATCATGGGGTATGCATTTCTCTCTTCTCTGCATCGTCTTTTCTTCCATGGCGTTTTTATCTTCTTCATCTTCATCCAATTATGTTCTCTCTCTCTCGAAGTTGTTCATATTGAAGACTCGGGGAATGGGAGCTGGTCGTAAGTTGAAGTCGCACCGTAGAAGGCAGAGGTGGGCAGATAAGTCATATAAGAAATCTCATCTTGGTAATGAGTGGAAAAAGCCATTTGCAGGGTCATCTCATGCAAAAGGGATTGTGCTTGAAAAGATTGGAATTGAAGCCAAGCAGCCAAATTCTGCTATTAGAAAATGTGCTCGTGTTCAACTGATTAAAAATGGGAAGAAAATTGCTGCTTTTGTACCTAATGATGGCTGCCTCAATTATATTGAGGAAAATGACGAGGTATTGATCGCGGGGTTCGGACGTAAGGGTCATGCTGTAGGAGATATTCCTGGTGTTAGGTTCAAGGTTGTTAAGGTTTCTGGTGTTTCTCTTCTGGCTCTCTTCAAAGAGAAGAAAGAAAAGCCAAGATCCTAG

Protein sequence

MRYIYNIRPAIPLRLGFELPPITVGLRTLLSNLGVSGRSCSIFLNPPSWGMHFSLLCIVFSSMAFLSSSSSSNYVLSLSKLFILKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

Homology

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BLAST of CmUC09G179950 vs. NCBI nr
Match: PHU05139.1 (40S ribosomal protein S23 [Capsicum chinense])

HSP 1 Score: 285.4 bits (729), Expect = 4.2e-73
Identity = 142/145 (97.93%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 80  KLFILKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIE 139
           ++F LKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIE
Sbjct: 24  RVFALKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIE 83

Query: 140 AKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGV 199
           AKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGV
Sbjct: 84  AKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGV 143

Query: 200 RFKVVKVSGVSLLALFKEKKEKPRS 225
           RFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 144 RFKVVKVSGVSLLALFKEKKEKPRS 168

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BLAST of CmUC09G179950 vs. NCBI nr
Match: KAG9156143.1 (hypothetical protein Leryth_015551 [Lithospermum erythrorhizon])

HSP 1 Score: 283.9 bits (725), Expect = 1.2e-72
Identity = 142/144 (98.61%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 81  LFILKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEA 140
           LF LKTRGMGAGRKL+SHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEA
Sbjct: 20  LFRLKTRGMGAGRKLRSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEA 79

Query: 141 KQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVR 200
           KQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVR
Sbjct: 80  KQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVR 139

Query: 201 FKVVKVSGVSLLALFKEKKEKPRS 225
           FKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 140 FKVVKVSGVSLLALFKEKKEKPRS 163

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BLAST of CmUC09G179950 vs. NCBI nr
Match: PIA38663.1 (hypothetical protein AQUCO_02700115v1, partial [Aquilegia coerulea])

HSP 1 Score: 282.3 bits (721), Expect = 3.5e-72
Identity = 148/170 (87.06%), Postives = 155/170 (91.18%), Query Frame = 0


Query: 55  LLCIVFSSMAFLSSSSSSNYVLSLSKLFILKTRGMGAGRKLKSHRRRQRWADKSYKKSHL 114
           LL  + SS +F S+S+ S+  + +      KTRGMGAGRKLKSHRRRQRWADKSYKKSHL
Sbjct: 12  LLLRLRSSSSFFSTSNYSHLTVIMG-----KTRGMGAGRKLKSHRRRQRWADKSYKKSHL 71

Query: 115 GNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 174
           GNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY
Sbjct: 72  GNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 131

Query: 175 IEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 225
           IEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 132 IEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 176

[Close]

BLAST of CmUC09G179950 vs. NCBI nr
Match: PHT36368.1 (40S ribosomal protein S23 [Capsicum baccatum])

HSP 1 Score: 282.0 bits (720), Expect = 4.6e-72
Identity = 143/151 (94.70%), Postives = 145/151 (96.03%), Query Frame = 0


Query: 74  YVLSLSKLFILKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVL 133
           ++L LS     KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVL
Sbjct: 38  FLLILSLFVERKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVL 97

Query: 134 EKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAV 193
           EKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAV
Sbjct: 98  EKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAV 157

Query: 194 GDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 225
           GDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 158 GDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 188

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BLAST of CmUC09G179950 vs. NCBI nr
Match: KAE7996916.1 (hypothetical protein FH972_001594 [Carpinus fangiana])

HSP 1 Score: 281.6 bits (719), Expect = 6.1e-72
Identity = 142/147 (96.60%), Postives = 145/147 (98.64%), Query Frame = 0


Query: 80  KLFIL--KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIG 139
           K+++L  KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIG
Sbjct: 2   KMWVLCRKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIG 61

Query: 140 IEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIP 199
           IEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIP
Sbjct: 62  IEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIP 121

Query: 200 GVRFKVVKVSGVSLLALFKEKKEKPRS 225
           GVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 122 GVRFKVVKVSGVSLLALFKEKKEKPRS 148

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BLAST of CmUC09G179950 vs. ExPASy Swiss-Prot
Match: P46297 (40S ribosomal protein S23 OS=Fragaria ananassa OX=3747 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.5e-73
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 85  KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN 144
           KTRGMGA RKLK+HRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN
Sbjct: 3   KTRGMGAARKLKNHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN 62

Query: 145 SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 204
           SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV
Sbjct: 63  SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 122

Query: 205 KVSGVSLLALFKEKKEKPRS 225
           KVSGVSLLALFKEKKEKPRS
Sbjct: 123 KVSGVSLLALFKEKKEKPRS 142

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BLAST of CmUC09G179950 vs. ExPASy Swiss-Prot
Match: Q9M5Z9 (40S ribosomal protein S23 OS=Euphorbia esula OX=3993 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 1.3e-72
Identity = 137/140 (97.86%), Postives = 137/140 (97.86%), Query Frame = 0


Query: 85  KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN 144
           KT GMGA RKLKSHRR QRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN
Sbjct: 3   KTHGMGAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN 62

Query: 145 SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 204
           SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV
Sbjct: 63  SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 122

Query: 205 KVSGVSLLALFKEKKEKPRS 225
           KVSGVSLLALFKEKKEKPRS
Sbjct: 123 KVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of CmUC09G179950 vs. ExPASy Swiss-Prot
Match: P49201 (40S ribosomal protein S23-2 OS=Arabidopsis thaliana OX=3702 GN=RPS23B PE=2 SV=2)

HSP 1 Score: 268.1 bits (684), Expect = 9.1e-71
Identity = 135/140 (96.43%), Postives = 135/140 (96.43%), Query Frame = 0


Query: 85  KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN 144
           KTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN
Sbjct: 3   KTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN 62

Query: 145 SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 204
           SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV
Sbjct: 63  SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 122

Query: 205 KVSGVSLLALFKEKKEKPRS 225
           KVSGVSLLALFKEKKEKPRS
Sbjct: 123 KVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of CmUC09G179950 vs. ExPASy Swiss-Prot
Match: Q9SF35 (40S ribosomal protein S23-1 OS=Arabidopsis thaliana OX=3702 GN=RPS23A PE=2 SV=2)

HSP 1 Score: 259.2 bits (661), Expect = 4.2e-68
Identity = 132/140 (94.29%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 85  KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN 144
           KTRGMGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQPN
Sbjct: 3   KTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQPN 62

Query: 145 SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 204
           SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV
Sbjct: 63  SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 122

Query: 205 KVSGVSLLALFKEKKEKPRS 225
           KVSGVSLLALFKEKKEKPRS
Sbjct: 123 KVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of CmUC09G179950 vs. ExPASy Swiss-Prot
Match: Q9GRJ3 (40S ribosomal protein S23 OS=Lumbricus rubellus OX=35632 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 8.5e-61
Identity = 114/141 (80.85%), Postives = 125/141 (88.65%), Query Frame = 0


Query: 85  KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQP 144
           K RG+   RKLK+HRR QRW DK YKKSHLG  WK  PF G+SHAKGIVLEK+G+EAKQP
Sbjct: 3   KPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQP 62

Query: 145 NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 204
           NSAIRKC RVQLIKNGKKI AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKV
Sbjct: 63  NSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKV 122

Query: 205 VKVSGVSLLALFKEKKEKPRS 225
           VKV+ VSLLAL+K+KKE+PRS
Sbjct: 123 VKVASVSLLALYKQKKERPRS 143

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BLAST of CmUC09G179950 vs. ExPASy TrEMBL
Match: A0A2G3BFA1 (40S ribosomal protein S23 OS=Capsicum chinense OX=80379 GN=BC332_25961 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 2.0e-73
Identity = 142/145 (97.93%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 80  KLFILKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIE 139
           ++F LKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIE
Sbjct: 24  RVFALKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIE 83

Query: 140 AKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGV 199
           AKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGV
Sbjct: 84  AKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGV 143

Query: 200 RFKVVKVSGVSLLALFKEKKEKPRS 225
           RFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 144 RFKVVKVSGVSLLALFKEKKEKPRS 168

[Close]

BLAST of CmUC09G179950 vs. ExPASy TrEMBL
Match: A0A2G5D591 (Uncharacterized protein (Fragment) OS=Aquilegia coerulea OX=218851 GN=AQUCO_02700115v1 PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.7e-72
Identity = 148/170 (87.06%), Postives = 155/170 (91.18%), Query Frame = 0


Query: 55  LLCIVFSSMAFLSSSSSSNYVLSLSKLFILKTRGMGAGRKLKSHRRRQRWADKSYKKSHL 114
           LL  + SS +F S+S+ S+  + +      KTRGMGAGRKLKSHRRRQRWADKSYKKSHL
Sbjct: 12  LLLRLRSSSSFFSTSNYSHLTVIMG-----KTRGMGAGRKLKSHRRRQRWADKSYKKSHL 71

Query: 115 GNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 174
           GNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY
Sbjct: 72  GNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 131

Query: 175 IEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 225
           IEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 132 IEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 176

[Close]

BLAST of CmUC09G179950 vs. ExPASy TrEMBL
Match: A0A2G2VTS0 (40S ribosomal protein S23 OS=Capsicum baccatum OX=33114 GN=CQW23_24068 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 2.2e-72
Identity = 143/151 (94.70%), Postives = 145/151 (96.03%), Query Frame = 0


Query: 74  YVLSLSKLFILKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVL 133
           ++L LS     KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVL
Sbjct: 38  FLLILSLFVERKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVL 97

Query: 134 EKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAV 193
           EKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAV
Sbjct: 98  EKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAV 157

Query: 194 GDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 225
           GDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 158 GDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 188

[Close]

BLAST of CmUC09G179950 vs. ExPASy TrEMBL
Match: A0A4Y7L2D0 (Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_003005 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.9e-72
Identity = 140/144 (97.22%), Postives = 142/144 (98.61%), Query Frame = 0


Query: 81  LFILKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEA 140
           + + KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEA
Sbjct: 1   MILSKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEA 60

Query: 141 KQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVR 200
           KQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVR
Sbjct: 61  KQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVR 120

Query: 201 FKVVKVSGVSLLALFKEKKEKPRS 225
           FKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 FKVVKVSGVSLLALFKEKKEKPRS 144

[Close]

BLAST of CmUC09G179950 vs. ExPASy TrEMBL
Match: A0A7J6WFV3 (30S ribosomal protein S12 OS=Thalictrum thalictroides OX=46969 GN=FRX31_014581 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.9e-72
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 83  ILKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 142
           I KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 138 IRKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 197

Query: 143 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 202
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 198 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 257

Query: 203 VVKVSGVSLLALFKEKKEKPRS 225
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 258 VVKVSGVSLLALFKEKKEKPRS 279

[Close]

BLAST of CmUC09G179950 vs. TAIR 10
Match: AT5G02960.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 268.1 bits (684), Expect = 6.4e-72
Identity = 135/140 (96.43%), Postives = 135/140 (96.43%), Query Frame = 0


Query: 85  KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN 144
           KTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN
Sbjct: 3   KTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN 62

Query: 145 SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 204
           SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV
Sbjct: 63  SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 122

Query: 205 KVSGVSLLALFKEKKEKPRS 225
           KVSGVSLLALFKEKKEKPRS
Sbjct: 123 KVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of CmUC09G179950 vs. TAIR 10
Match: AT3G09680.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 259.2 bits (661), Expect = 3.0e-69
Identity = 132/140 (94.29%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 85  KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN 144
           KTRGMGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQPN
Sbjct: 3   KTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQPN 62

Query: 145 SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 204
           SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV
Sbjct: 63  SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 122

Query: 205 KVSGVSLLALFKEKKEKPRS 225
           KVSGVSLLALFKEKKEKPRS
Sbjct: 123 KVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of CmUC09G179950 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 48.9 bits (115), Expect = 6.1e-06
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 116 NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 175
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 176 IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 206
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

[Close]

BLAST of CmUC09G179950 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 48.9 bits (115), Expect = 6.1e-06
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 116 NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 175
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 176 IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 206
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

[Close]

BLAST of CmUC09G179950 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 48.9 bits (115), Expect = 6.1e-06
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 116 NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 175
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 176 IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 206
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

The following BLAST results are available for this feature:

BLAST of CmUC09G179950 vs. NCBI nr


Match Name	E-value	Identity	Description
PHU05139.1	4.2e-73	97.93	40S ribosomal protein S23 [Capsicum chinense]	[more]
KAG9156143.1	1.2e-72	98.61	hypothetical protein Leryth_015551 [Lithospermum erythrorhizon]	[more]
PIA38663.1	3.5e-72	87.06	hypothetical protein AQUCO_02700115v1, partial [Aquilegia coerulea]	[more]
PHT36368.1	4.6e-72	94.70	40S ribosomal protein S23 [Capsicum baccatum]	[more]
KAE7996916.1	6.1e-72	96.60	hypothetical protein FH972_001594 [Carpinus fangiana]	[more]

BLAST of CmUC09G179950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46297	1.5e-73	98.57	40S ribosomal protein S23 OS=Fragaria ananassa OX=3747 GN=RPS23 PE=2 SV=1	[more]
Q9M5Z9	1.3e-72	97.86	40S ribosomal protein S23 OS=Euphorbia esula OX=3993 GN=RPS23 PE=2 SV=1	[more]
P49201	9.1e-71	96.43	40S ribosomal protein S23-2 OS=Arabidopsis thaliana OX=3702 GN=RPS23B PE=2 SV=2	[more]
Q9SF35	4.2e-68	94.29	40S ribosomal protein S23-1 OS=Arabidopsis thaliana OX=3702 GN=RPS23A PE=2 SV=2	[more]
Q9GRJ3	8.5e-61	80.85	40S ribosomal protein S23 OS=Lumbricus rubellus OX=35632 GN=RPS23 PE=2 SV=1	[more]

BLAST of CmUC09G179950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2G3BFA1	2.0e-73	97.93	40S ribosomal protein S23 OS=Capsicum chinense OX=80379 GN=BC332_25961 PE=3 SV=1	[more]
A0A2G5D591	1.7e-72	87.06	Uncharacterized protein (Fragment) OS=Aquilegia coerulea OX=218851 GN=AQUCO_0270...	[more]
A0A2G2VTS0	2.2e-72	94.70	40S ribosomal protein S23 OS=Capsicum baccatum OX=33114 GN=CQW23_24068 PE=3 SV=1	[more]
A0A4Y7L2D0	2.9e-72	97.22	Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_003005 PE=3 SV=1	[more]
A0A7J6WFV3	2.9e-72	99.30	30S ribosomal protein S12 OS=Thalictrum thalictroides OX=46969 GN=FRX31_014581 P...	[more]

BLAST of CmUC09G179950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02960.1	6.4e-72	96.43	Ribosomal protein S12/S23 family protein	[more]
AT3G09680.1	3.0e-69	94.29	Ribosomal protein S12/S23 family protein	[more]
ATCG00065.1	6.1e-06	36.26	ribosomal protein S12A	[more]
ATCG01230.1	6.1e-06	36.26	ribosomal protein S12B	[more]
ATCG00905.1	6.1e-06	36.26	ribosomal protein S12C	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005680	Ribosomal protein S23, eukaryotic/archaeal	TIGRFAM	TIGR00982	TIGR00982	coord: 88..223 e-value: 2.3E-52 score: 174.4
IPR005680	Ribosomal protein S23, eukaryotic/archaeal	CDD	cd03367	Ribosomal_S23	coord: 108..221 e-value: 7.01342E-78 score: 227.537
IPR006032	Ribosomal protein S12/S23	PFAM	PF00164	Ribosom_S12_S23	coord: 113..223 e-value: 2.6E-49 score: 165.6
IPR006032	Ribosomal protein S12/S23	PANTHER	PTHR11652	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	coord: 69..224
IPR006032	Ribosomal protein S12/S23	PROSITE	PS00055	RIBOSOMAL_S12	coord: 141..148
None	No IPR available	GENE3D	2.40.50.140		coord: 107..224 e-value: 1.4E-46 score: 158.8
None	No IPR available	PANTHER	PTHR11652:SF59	BNACNNG03140D PROTEIN	coord: 69..224
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 102..222

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC09G179950.1	CmUC09G179950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome