CmUC09G179320 (gene) Watermelon (USVL531) v1

Overview
NameCmUC09G179320
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionActin-11
LocationCmU531Chr09: 34857773 .. 34858673 (+)
RNA-Seq ExpressionCmUC09G179320
SyntenyCmUC09G179320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTAAGGAAACCTTATTTAGCTTAATGTAATTGGAGTCTCTGAAGGGAAATTGAAATCTTGGTGGTGGGTGTTGAGCTGAATCATGACTCAGAAATTCGGTGGTGGGTTGCGCCCTACAGGAACTCCCTCAGTGGGTTGGTCCTTCGTCGTCGTCATCTCCTCGCTTCTCGCCGGCGCCTCCATTGTCCACAACATCTACAAACCAAATCTTGTACTCTCCCTCTCTCTTTCTCTCTATCTGCTATCGGCATATATACGTAGACTGACCTTTTGATGATTATTCATTGTCGGAAATATAGTCATGTATGTGTCGGTTACTGGGTGCAATTTAACTTGACCAATGCCTGCAACCTGTTCGATGAAATGCCCACCTTGTTATTTTGTGCCAATTGTCTTATATTTCATTATAAGCTTGTCATTTTCTGTTTTTGATCAATGGGGATTCAGAAAAATTGTTTTGCCATGTTCTCTTGAAAGCAGATACCAATTTCAGCTTCTTATTTTTTTTTCAGAAGTATGGTCATTTTCTGCCGTGTGCAATTTAACTTGACAATCCTGTAACATGTTCGATGAAAGGTCTACCTTGTAGATTTTGTGCATTGCCTTCTTATTTGAGTATAAGCCTGTCATTTACATTTTTTTATTAATGGATTTCAGAAAAATTGCTTTGCCATGTTCTTGAAATCAGATATCAATTTCCACTTCTTCTTTTTTCCTATTTCTTGACTTTCTTTTATTAGTTTTTCATTAAATGTTCGTAAATTTGTTCTGTTCATATATTTTTGCAGTCGTATTGCTTCATCCGTTTCTCTTGTTTCACTAAAGAGTCCTATATTCAGAGTGGTCTTCTAACTTCTATCCTTTTTAATGTCTTTGTAGACCTTGCCTCCGGTGGATAA

mRNA sequence

AATTAAGGAAACCTTATTTAGCTTAATGTAATTGGAGTCTCTGAAGGGAAATTGAAATCTTGGTGGTGGGTGTTGAGCTGAATCATGACTCAGAAATTCGGTGGTGGGTTGCGCCCTACAGGAACTCCCTCAGTGGGTTGGTCCTTCGTCGTCGTCATCTCCTCGCTTCTCGCCGGCGCCTCCATTGTCCACAACATCTACAAACCAAATCTTTCGTATTGCTTCATCCGTTTCTCTTGTTTCACTAAAGAGTCCTATATTCAGAGTGGTCTTCTAACTTCTATCCTTTTTAATGTCTTTGTAGACCTTGCCTCCGGTGGATAA

Coding sequence (CDS)

ATGACTCAGAAATTCGGTGGTGGGTTGCGCCCTACAGGAACTCCCTCAGTGGGTTGGTCCTTCGTCGTCGTCATCTCCTCGCTTCTCGCCGGCGCCTCCATTGTCCACAACATCTACAAACCAAATCTTTCGTATTGCTTCATCCGTTTCTCTTGTTTCACTAAAGAGTCCTATATTCAGAGTGGTCTTCTAACTTCTATCCTTTTTAATGTCTTTGTAGACCTTGCCTCCGGTGGATAA

Protein sequence

MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIYKPNLSYCFIRFSCFTKESYIQSGLLTSILFNVFVDLASGG
Homology
BLAST of CmUC09G179320 vs. NCBI nr
Match: KGN51309.1 (hypothetical protein Csa_009362 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 1.6e-14
Identity = 42/44 (95.45%), Postives = 44/44 (100.00%), Query Frame = 0

Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIYKPNLS 45
          MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNI+KPNL+
Sbjct: 1  MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIFKPNLT 44

BLAST of CmUC09G179320 vs. NCBI nr
Match: KAA0037665.1 (putative transmembrane protein [Cucumis melo var. makuwa] >TYK22809.1 putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 2.7e-14
Identity = 41/44 (93.18%), Postives = 44/44 (100.00%), Query Frame = 0

Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIYKPNLS 45
          MTQKFGGGLRPTGTPSVGWSFVVV+SSLLAGASIVH+IYKPNL+
Sbjct: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNLT 44

BLAST of CmUC09G179320 vs. NCBI nr
Match: KAG7016236.1 (hypothetical protein SDJN02_21342, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 87.0 bits (214), Expect = 7.7e-14
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = 0

Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIYKPNLS 45
          M +KFGGGLRPTGTPSVGWSFVVV+SSLLAGASIVHNIYKPNL+
Sbjct: 1  MARKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHNIYKPNLT 44

BLAST of CmUC09G179320 vs. NCBI nr
Match: XP_023514673.1 (uncharacterized protein LOC111778900 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.8 bits (203), Expect = 1.5e-12
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 0

Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIYKPNLS 45
          M QKFGG L PTGTPSVGWSFVVVISSLLAGAS+VHNIYKPNL+
Sbjct: 1  MAQKFGGRLLPTGTPSVGWSFVVVISSLLAGASVVHNIYKPNLN 44

BLAST of CmUC09G179320 vs. NCBI nr
Match: KAG6602373.1 (hypothetical protein SDJN03_07606, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.8 bits (203), Expect = 1.5e-12
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 0

Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIYKPNLS 45
          M QKFGG L PTGTPSVGWSFVVVISSLLAGAS+VHNIYKPNL+
Sbjct: 1  MAQKFGGRLLPTGTPSVGWSFVVVISSLLAGASVVHNIYKPNLN 44

BLAST of CmUC09G179320 vs. ExPASy TrEMBL
Match: A0A0A0KQX5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517080 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 7.5e-15
Identity = 42/44 (95.45%), Postives = 44/44 (100.00%), Query Frame = 0

Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIYKPNLS 45
          MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNI+KPNL+
Sbjct: 1  MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIFKPNLT 44

BLAST of CmUC09G179320 vs. ExPASy TrEMBL
Match: A0A5A7T878 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold311G00480 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.3e-14
Identity = 41/44 (93.18%), Postives = 44/44 (100.00%), Query Frame = 0

Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIYKPNLS 45
          MTQKFGGGLRPTGTPSVGWSFVVV+SSLLAGASIVH+IYKPNL+
Sbjct: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNLT 44

BLAST of CmUC09G179320 vs. ExPASy TrEMBL
Match: A0A6A4PT41 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr11g0073451 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.9e-11
Identity = 34/44 (77.27%), Postives = 40/44 (90.91%), Query Frame = 0

Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIYKPNLS 45
          M +KFGGG +PTGTPS+GWS VVV+ SLLAGAS+VHNIYKPNL+
Sbjct: 1  MNKKFGGGRKPTGTPSLGWSCVVVVCSLLAGASVVHNIYKPNLA 44

BLAST of CmUC09G179320 vs. ExPASy TrEMBL
Match: A0A2G5C6T2 (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_08400030v1 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.9e-10
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 0

Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIYKPNLS 45
          M QKFGGG RPTGTPS+GWS VVVI SLL GAS+VHNI+KP+L+
Sbjct: 1  MNQKFGGGKRPTGTPSLGWSCVVVIVSLLTGASVVHNIFKPDLT 44

BLAST of CmUC09G179320 vs. ExPASy TrEMBL
Match: A0A151TD64 (Actin-11 OS=Cajanus cajan OX=3821 GN=KK1_019588 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.5e-10
Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = 0

Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIYKPNLS 45
          M +KFGGG +PTGTPS+ WS VVV+ SLLAGAS+VHNIYKPNL+
Sbjct: 1  MNRKFGGGKKPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPNLA 44

BLAST of CmUC09G179320 vs. TAIR 10
Match: AT4G26055.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-11
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 0

Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIYKPNLS 45
          M  KF GG +PTGTPS+ WS VVV++SLLAGAS+VHNIYKP+L+
Sbjct: 1  MNNKF-GGKKPTGTPSLAWSTVVVVASLLAGASVVHNIYKPDLT 43

BLAST of CmUC09G179320 vs. TAIR 10
Match: AT5G57080.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26055.1); Has 14 Blast hits to 14 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.8 bits (133), Expect = 1.8e-08
Identity = 26/37 (70.27%), Postives = 32/37 (86.49%), Query Frame = 0

Query: 8  GLRPTGTPSVGWSFVVVISSLLAGASIVHNIYKPNLS 45
          G  PTGTPS+  S +VV++SLLAGAS+VHNIYKP+LS
Sbjct: 7  GKLPTGTPSLAMSTLVVVASLLAGASVVHNIYKPDLS 43

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN51309.11.6e-1495.45hypothetical protein Csa_009362 [Cucumis sativus][more]
KAA0037665.12.7e-1493.18putative transmembrane protein [Cucumis melo var. makuwa] >TYK22809.1 putative t... [more]
KAG7016236.17.7e-1490.91hypothetical protein SDJN02_21342, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023514673.11.5e-1288.64uncharacterized protein LOC111778900 [Cucurbita pepo subsp. pepo][more]
KAG6602373.11.5e-1288.64hypothetical protein SDJN03_07606, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KQX57.5e-1595.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517080 PE=4 SV=1[more]
A0A5A7T8781.3e-1493.18Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A6A4PT413.9e-1177.27Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr11g0073451 PE=4 SV=1[more]
A0A2G5C6T21.9e-1077.27Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_08400030v1 PE=4... [more]
A0A151TD642.5e-1075.00Actin-11 OS=Cajanus cajan OX=3821 GN=KK1_019588 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT4G26055.11.3e-1170.45unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G57080.11.8e-0870.27unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027858Protein BRAWNINPFAMPF14990DUF4516coord: 11..44
e-value: 5.2E-13
score: 48.5
IPR027858Protein BRAWNINPANTHERPTHR28492HYPOTHETICAL PROTEIN LOC691921coord: 1..44

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC09G179320.1CmUC09G179320.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034551 mitochondrial respiratory chain complex III assembly
cellular_component GO:0005856 cytoskeleton
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion
molecular_function GO:0005524 ATP binding