CmUC09G178500 (gene) Watermelon (USVL531) v1

Overview
NameCmUC09G178500
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionUnknown protein
LocationCmU531Chr09: 34103592 .. 34104155 (-)
RNA-Seq ExpressionCmUC09G178500
SyntenyCmUC09G178500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATATTCGAAAAACTCCAAGAATACAAGTGGATGGCGCCGAATCATAAGGGTAATTTAGTACTTTCACATCCTTCACGACTATAAAACACGCCCGGCCCCCCACTATCAATTTTACCCGCTGATAACAACCTCCACAGGGTTCATTCAGCATCGTTGAATCCATTCCGCCGGGGTCTCTGATTTCCCGGTCGCCGGAGTTTCTGTTTCCGATCAACCGTTTGTATTCTCTCTATTTCTCTTTAATCTTTCATTTCTTCTCCGATTTTCTCTGATGCCAGGTTTTTTTTGGGGTTTTCTTATCAGAGGTTTTCGAGACTGACGAAGAGCTGGGTAATAACAGAGCTGGTGGTGTGATGGGGTTTTGTATTTCTCCATTGGGAACACCGGCTAGGTTACTTTGGAGCACCAGTTTCTTCCGCCACAAGCTCATGATTTTCTAATTTTCAGCCTTATTGCTGAAAATACCAAAGCCCATCTAATTCGTTTCTCGTTTTAATAAAGATCTCCCTCGATTTCGGGTCGCTGTGGCCAATCAGCCGCCGCCGTAAATCGCCGGTGA

mRNA sequence

ATGCAATATTCGAAAAACTCCAAGAATACAAGTGGATGGCGCCGAATCATAAGGGGTTCATTCAGCATCGTTGAATCCATTCCGCCGGGGTCTCTGATTTCCCGGTCGCCGGAGTTTCTGTTTCCGATCAACCAGGTTTTCGAGACTGACGAAGAGCTGGGTAATAACAGAGCTGGTGGTGTGATGGGGTTTTGTATTTCTCCATTGGGAACACCGGCTAGATCTCCCTCGATTTCGGGTCGCTGTGGCCAATCAGCCGCCGCCGTAAATCGCCGGTGA

Coding sequence (CDS)

ATGCAATATTCGAAAAACTCCAAGAATACAAGTGGATGGCGCCGAATCATAAGGGGTTCATTCAGCATCGTTGAATCCATTCCGCCGGGGTCTCTGATTTCCCGGTCGCCGGAGTTTCTGTTTCCGATCAACCAGGTTTTCGAGACTGACGAAGAGCTGGGTAATAACAGAGCTGGTGGTGTGATGGGGTTTTGTATTTCTCCATTGGGAACACCGGCTAGATCTCCCTCGATTTCGGGTCGCTGTGGCCAATCAGCCGCCGCCGTAAATCGCCGGTGA

Protein sequence

MQYSKNSKNTSGWRRIIRGSFSIVESIPPGSLISRSPEFLFPINQVFETDEELGNNRAGGVMGFCISPLGTPARSPSISGRCGQSAAAVNRR
Homology
[Close]
BLAST of CmUC09G178500 vs. NCBI nr
Match: KAG7016183.1 (hypothetical protein SDJN02_21287, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 81.6 bits (200), Expect = 3.8e-12
Identity = 39/45 (86.67%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 30 GSLISRSPEFLFPINQVFETDEELGNNRAGGVMGFCISPLGTPAR 75
          G LISRSPEFLF I  VFETDE LGNNRAG VMGFCISPLGTPAR
Sbjct: 16 GDLISRSPEFLFTIKLVFETDEALGNNRAGRVMGFCISPLGTPAR 60

[Close]
BLAST of CmUC09G178500 vs. NCBI nr
Match: KAG7033126.1 (hypothetical protein SDJN02_07179, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-07
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 0 

Query: 40 LFPINQVFETDEELGNNRAGGVMGFCISPLGTPAR 75
          L    +VFETDEELGNNRAGGVMGFC+SPLGTPAR
Sbjct: 40 LITTREVFETDEELGNNRAGGVMGFCVSPLGTPAR 74

The following BLAST results are available for this feature:
BLAST of CmUC09G178500 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7016183.13.8e-1286.67hypothetical protein SDJN02_21287, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG7033126.11.6e-0782.86hypothetical protein SDJN02_07179, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmUC09G178500 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC09G178500 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC09G178500 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC09G178500.1CmUC09G178500.1mRNA