Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCACTCTGCCGTTTTCAACGCCCTTTTGGCGGCGGCGCTGCTCTTCTCCGCCGCCGCTCACTCGCCGGTTCCGTCACCGGCCCCGTCGCGCACTCCCCCGGCCTCCCCTTCCCCTCCCTGGAGATGGACCCCCATCACCAAGCCTCCTCCACCCCCAACGCCGTCGCATGAGACCAAACCCACTCCACTGTCGTCGTATCCGGCACCGGCACCGTCCCCTACTTCCGTTCCACCGGCAGCCCATCACCATACACCATCTGCTCGTCCAGTTTCCCCGCCGCTGCCACAGAGCCCTTCTCCGTCCGCGCTGCCAGTACCGTCTCCGTCTCCATCTTCGTCGTGGATCGCCGGTCCGCCGTCGGAAGTACCGGCGCCGTCGAAAGCGAAGAGCGATGCCTTTAATAACAAATTCTCGGTGGTGAGATCGGTGGCTATTGGAGCCATGGCTGCTGCTCTGCTTTAA
mRNA sequence
ATGCCTCACTCTGCCGTTTTCAACGCCCTTTTGGCGGCGGCGCTGCTCTTCTCCGCCGCCGCTCACTCGCCGGTTCCGTCACCGGCCCCGTCGCGCACTCCCCCGGCCTCCCCTTCCCCTCCCTGGAGATGGACCCCCATCACCAAGCCTCCTCCACCCCCAACGCCGTCGCATGAGACCAAACCCACTCCACTGTCGTCGTATCCGGCACCGGCACCGTCCCCTACTTCCGTTCCACCGGCAGCCCATCACCATACACCATCTGCTCGTCCAGTTTCCCCGCCGCTGCCACAGAGCCCTTCTCCGTCCGCGCTGCCAGTACCGTCTCCGTCTCCATCTTCGTCGTGGATCGCCGGTCCGCCGTCGGAAGTACCGGCGCCGTCGAAAGCGAAGAGCGATGCCTTTAATAACAAATTCTCGGTGGTGAGATCGGTGGCTATTGGAGCCATGGCTGCTGCTCTGCTTTAA
Coding sequence (CDS)
ATGCCTCACTCTGCCGTTTTCAACGCCCTTTTGGCGGCGGCGCTGCTCTTCTCCGCCGCCGCTCACTCGCCGGTTCCGTCACCGGCCCCGTCGCGCACTCCCCCGGCCTCCCCTTCCCCTCCCTGGAGATGGACCCCCATCACCAAGCCTCCTCCACCCCCAACGCCGTCGCATGAGACCAAACCCACTCCACTGTCGTCGTATCCGGCACCGGCACCGTCCCCTACTTCCGTTCCACCGGCAGCCCATCACCATACACCATCTGCTCGTCCAGTTTCCCCGCCGCTGCCACAGAGCCCTTCTCCGTCCGCGCTGCCAGTACCGTCTCCGTCTCCATCTTCGTCGTGGATCGCCGGTCCGCCGTCGGAAGTACCGGCGCCGTCGAAAGCGAAGAGCGATGCCTTTAATAACAAATTCTCGGTGGTGAGATCGGTGGCTATTGGAGCCATGGCTGCTGCTCTGCTTTAA
Protein sequence
MPHSAVFNALLAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPPPPPTPSHETKPTPLSSYPAPAPSPTSVPPAAHHHTPSARPVSPPLPQSPSPSALPVPSPSPSSSWIAGPPSEVPAPSKAKSDAFNNKFSVVRSVAIGAMAAALL
Homology
BLAST of CmUC09G175710 vs. NCBI nr
Match:
XP_038887113.1 (anther-specific proline-rich protein APG-like [Benincasa hispida])
HSP 1 Score: 185.7 bits (470), Expect = 3.1e-43
Identity = 117/156 (75.00%), Postives = 123/156 (78.85%), Query Frame = 0
Query: 1 MPHSAVFNALLAAALLFS-AAAHSPVPSPAPSRTPPASPSPPWRWTPITKPPPPPTPSHE 60
MPHSA+ NALLAAALLFS AAA +P PSPAP TPPASPSPPWRWTPITKPPP TPSHE
Sbjct: 1 MPHSALLNALLAAALLFSAAAAPAPAPSPAPLHTPPASPSPPWRWTPITKPPPSSTPSHE 60
Query: 61 TKPTPLSSYPAPAPSPTSVPPAAHHHTPSARPVSPPLPQSPSPSALPVPSPSPSSSWIAG 120
+KPTP S P P PSPT V P HHH P+ RPVS PL +SPS PSPSPS SWIA
Sbjct: 61 SKPTPPPSSPPPTPSPTPVLPPHHHHAPTERPVSLPLQKSPS------PSPSPSPSWIAV 120
Query: 121 PPSEVPAPSKAKSDAFNNKFSVVRSVAIGAMAAALL 156
PP E PAPSKAKSDAFNN+FSVV SVAI AMAAALL
Sbjct: 121 PPPEAPAPSKAKSDAFNNRFSVVASVAIDAMAAALL 150
BLAST of CmUC09G175710 vs. NCBI nr
Match:
XP_011659717.1 (vegetative cell wall protein gp1 [Cucumis sativus] >KGN43745.1 hypothetical protein Csa_017249 [Cucumis sativus])
HSP 1 Score: 142.1 bits (357), Expect = 4.0e-30
Identity = 101/156 (64.74%), Postives = 109/156 (69.87%), Query Frame = 0
Query: 1 MPHSAVFNALLAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPP-PPPTPSHE 60
MPHS + NALLAAALLFSAAA SP PSP+P TPPAS SPPWRW PITKPP PPTPSHE
Sbjct: 1 MPHSLLLNALLAAALLFSAAAISPSPSPSP--TPPASLSPPWRWAPITKPPTQPPTPSHE 60
Query: 61 TKPTPLSSYPAPAPSPTSVPPAAHHHTPSARPVSPPLPQSPSPSALPVPSPSPSSSWIAG 120
T+P+ P PSPTSVPP AHH P P+A P SPSPS +WIA
Sbjct: 61 TEPS------TPPPSPTSVPPPAHHDEP--------------PTAQP-DSPSPSPTWIAE 120
Query: 121 PPSEVPAPSKAKSDAFNNKFSVVRSVAIGAMAAALL 156
PPSE +PSKAKSD F N FS+V SVAIGAMAAA L
Sbjct: 121 PPSEALSPSKAKSDGFKNSFSMVGSVAIGAMAAAAL 133
BLAST of CmUC09G175710 vs. NCBI nr
Match:
XP_022141995.1 (extensin-like [Momordica charantia])
HSP 1 Score: 114.4 bits (285), Expect = 8.9e-22
Identity = 90/151 (59.60%), Postives = 107/151 (70.86%), Query Frame = 0
Query: 11 LAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPPPPPT---PSHETKPTPLSS 70
+AAALL SAAA P PAPS +P A+PSPPWRWTP KPP PPT P+ +PTP SS
Sbjct: 1 MAAALLASAAA---APRPAPSPSPMATPSPPWRWTPNPKPPTPPTSSSPAPSPQPTPPSS 60
Query: 71 YPAPAPSPTS--VPPAAHHHTPSARPVS-PPLPQSPSPSALPVPSPSPSSSWIAGPPSEV 130
PAP+PSPT+ VPPA P+A PVS PP QSP+P P P+ +P+ SWIAGPP++
Sbjct: 61 -PAPSPSPTTAVVPPA----PPTAAPVSPPPQTQSPAPPVTPPPAQAPAPSWIAGPPADA 120
Query: 131 PAPSKAKSDAFNNKFSVVRSVAIGAMAAALL 156
APSK KS+A N+FS+V SV IGAMAAA L
Sbjct: 121 LAPSKHKSNALKNRFSLVGSVGIGAMAAAAL 143
BLAST of CmUC09G175710 vs. NCBI nr
Match:
KAG6576849.1 (hypothetical protein SDJN03_24423, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 60.8 bits (146), Expect = 1.2e-05
Identity = 73/184 (39.67%), Postives = 90/184 (48.91%), Query Frame = 0
Query: 1 MPHSAVFNALLAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPP------PPP 60
M AV N + AA LL SAAA+SP+PSPAPS SPPW+WTP T+ P PP
Sbjct: 1 MASFAVLNVITAALLLISAAANSPLPSPAPS-----PESPPWKWTPDTESPSSPPEMEPP 60
Query: 61 TPS---HETKPTPLSSYPAPAP-------SPTSVPPAAHH--HTPSARPVSPPLP----- 120
+PS E P P S P P SP ++PPA H PS P P
Sbjct: 61 SPSVSPPELSPVPSSDTPTSPPDANPPTLSPAALPPAVKSPVHAPSPSKTKAPAPAPSKM 120
Query: 121 -----QSPSPSALPVPS-PSPSSSWIAGPPSEVPAPSKAKSDAFNNKFSVVRSVAIGAMA 156
++P SA PV S P+P+ PS P KA + N+F++ SVA G MA
Sbjct: 121 SPTPARAPKSSAPPVSSPPAPNGEMEPPTPSVAPTAPKADNGGAANRFAIRGSVAFGLMA 179
BLAST of CmUC09G175710 vs. NCBI nr
Match:
KAG7014869.1 (hypothetical protein SDJN02_22499, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 60.8 bits (146), Expect = 1.2e-05
Identity = 73/184 (39.67%), Postives = 90/184 (48.91%), Query Frame = 0
Query: 1 MPHSAVFNALLAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPP------PPP 60
M AV N + AA LL SAAA+SP+PSPAPS SPPW+WTP T+ P PP
Sbjct: 1 MASFAVLNVITAALLLISAAANSPLPSPAPS-----PESPPWKWTPDTESPSSPPEMEPP 60
Query: 61 TPS---HETKPTPLSSYPAPAP-------SPTSVPPAAHH--HTPSARPVSPPLP----- 120
+PS E P P S P P SP ++PPA H PS P P
Sbjct: 61 SPSVSPPELSPVPSSDTPTSPPDANPPTLSPAALPPAVKSPVHAPSPSKTKAPAPAPSKM 120
Query: 121 -----QSPSPSALPVPS-PSPSSSWIAGPPSEVPAPSKAKSDAFNNKFSVVRSVAIGAMA 156
++P SA PV S P+P+ PS P KA + N+F++ SVA G MA
Sbjct: 121 SPTPARAPKSSAPPVSSPPAPNGEMEPPTPSVAPTAPKADNGGAANRFAIGGSVAFGLMA 179
BLAST of CmUC09G175710 vs. ExPASy Swiss-Prot
Match:
Q9FPQ6 (Vegetative cell wall protein gp1 OS=Chlamydomonas reinhardtii OX=3055 GN=GP1 PE=1 SV=1)
HSP 1 Score: 50.4 bits (119), Expect = 2.1e-05
Identity = 53/117 (45.30%), Postives = 64/117 (54.70%), Query Frame = 0
Query: 24 PVPSPAPSRTPPASPSPPWRWT---PITKPPPPPTPSHETKPTPLS-SYPAPA-PSPTSV 83
P P P PS PP P PP+ P + P PPP+P+ T PTP S S P+P PSP V
Sbjct: 262 PAPPPPPSPPPPPPPRPPFPANTPMPPSPPSPPPSPAPPTPPTPPSPSPPSPVPPSPAPV 321
Query: 84 PPAAHHHTPSARPVSPPLPQSPSPSALPVPSPSPSSSWIAGP---PSEVPAPSKAKS 133
PP+ +P+ P P P +PSPS P PSPSPS S P PS +P+PS S
Sbjct: 322 PPSPAPPSPAPSPPPSPAPPTPSPSPSPSPSPSPSPSPSPSPSPSPSPIPSPSPKPS 378
BLAST of CmUC09G175710 vs. ExPASy Swiss-Prot
Match:
O10341 (Uncharacterized 29.3 kDa protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus OX=262177 GN=ORF92 PE=4 SV=1)
HSP 1 Score: 50.1 bits (118), Expect = 2.7e-05
Identity = 51/106 (48.11%), Postives = 58/106 (54.72%), Query Frame = 0
Query: 23 SPVPSPAPSRTPPASPSPPWRWTPITKPPPPPTPSHETKPTPLSSYPAPAPSPTSVPPAA 82
SP PSP P+ +P SP+P TP P P PTPS PTP S P P PSPT P +
Sbjct: 88 SPTPSPTPTPSPTPSPTPSPTPTPSPTPSPTPTPSPTPSPTPTPS-PTPTPSPTPSPTPS 147
Query: 83 HHHTPSARPVSPPLPQSPSPSALPVPSPSPSSSWIAGPPSEVPAPS 129
TPS P P P SP+PS P PSP+PS + PPS P PS
Sbjct: 148 PTPTPSPTPSPTPTP-SPTPSPTPTPSPTPSPT---PPPSPTPPPS 188
BLAST of CmUC09G175710 vs. ExPASy TrEMBL
Match:
A0A0A0K238 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064060 PE=4 SV=1)
HSP 1 Score: 142.1 bits (357), Expect = 1.9e-30
Identity = 101/156 (64.74%), Postives = 109/156 (69.87%), Query Frame = 0
Query: 1 MPHSAVFNALLAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPP-PPPTPSHE 60
MPHS + NALLAAALLFSAAA SP PSP+P TPPAS SPPWRW PITKPP PPTPSHE
Sbjct: 1 MPHSLLLNALLAAALLFSAAAISPSPSPSP--TPPASLSPPWRWAPITKPPTQPPTPSHE 60
Query: 61 TKPTPLSSYPAPAPSPTSVPPAAHHHTPSARPVSPPLPQSPSPSALPVPSPSPSSSWIAG 120
T+P+ P PSPTSVPP AHH P P+A P SPSPS +WIA
Sbjct: 61 TEPS------TPPPSPTSVPPPAHHDEP--------------PTAQP-DSPSPSPTWIAE 120
Query: 121 PPSEVPAPSKAKSDAFNNKFSVVRSVAIGAMAAALL 156
PPSE +PSKAKSD F N FS+V SVAIGAMAAA L
Sbjct: 121 PPSEALSPSKAKSDGFKNSFSMVGSVAIGAMAAAAL 133
BLAST of CmUC09G175710 vs. ExPASy TrEMBL
Match:
A0A6J1CJN4 (extensin-like OS=Momordica charantia OX=3673 GN=LOC111012233 PE=4 SV=1)
HSP 1 Score: 114.4 bits (285), Expect = 4.3e-22
Identity = 90/151 (59.60%), Postives = 107/151 (70.86%), Query Frame = 0
Query: 11 LAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPPPPPT---PSHETKPTPLSS 70
+AAALL SAAA P PAPS +P A+PSPPWRWTP KPP PPT P+ +PTP SS
Sbjct: 1 MAAALLASAAA---APRPAPSPSPMATPSPPWRWTPNPKPPTPPTSSSPAPSPQPTPPSS 60
Query: 71 YPAPAPSPTS--VPPAAHHHTPSARPVS-PPLPQSPSPSALPVPSPSPSSSWIAGPPSEV 130
PAP+PSPT+ VPPA P+A PVS PP QSP+P P P+ +P+ SWIAGPP++
Sbjct: 61 -PAPSPSPTTAVVPPA----PPTAAPVSPPPQTQSPAPPVTPPPAQAPAPSWIAGPPADA 120
Query: 131 PAPSKAKSDAFNNKFSVVRSVAIGAMAAALL 156
APSK KS+A N+FS+V SV IGAMAAA L
Sbjct: 121 LAPSKHKSNALKNRFSLVGSVGIGAMAAAAL 143
BLAST of CmUC09G175710 vs. ExPASy TrEMBL
Match:
A0A6J1E3R0 (extensin-like OS=Cucurbita moschata OX=3662 GN=LOC111430527 PE=4 SV=1)
HSP 1 Score: 60.1 bits (144), Expect = 9.6e-06
Identity = 70/184 (38.04%), Postives = 92/184 (50.00%), Query Frame = 0
Query: 1 MPHSAVFNALLAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPP------PPP 60
M AV N + AA LL SA+A+SP+PSPAPS SPPW+WTP T P PP
Sbjct: 1 MASFAVLNVITAALLLISASANSPLPSPAPS-----PESPPWKWTPDTDSPSSPPEMEPP 60
Query: 61 TPS---HETKPTPLSSYPAPAP-------SPTSVPPAAHH--HTPSARPVSPPLPQSPSP 120
+PS E P P S P P SP ++PPA H PS P P
Sbjct: 61 SPSVSPPELSPVPSSDTPTSPPDANPPTLSPAALPPAVKSPVHAPSPSKTKAPAPAPSKM 120
Query: 121 SALPVPSPSPSSSWIAGPPS-----EVPAPS------KAKSDAFNNKFSVVRSVAIGAMA 156
S+ P +P S++ ++ PP+ E P PS KA++ N+F++ +VA G MA
Sbjct: 121 SSTPARAPKSSAAPVSSPPAPNGEMEPPTPSVAPTAPKAENGGAANRFAIGGTVAFGLMA 179
BLAST of CmUC09G175710 vs. ExPASy TrEMBL
Match:
A0A2K3CSD7 (Uncharacterized protein OS=Chlamydomonas reinhardtii OX=3055 GN=CHLRE_16g693600v5 PE=4 SV=1)
HSP 1 Score: 59.3 bits (142), Expect = 1.6e-05
Identity = 59/133 (44.36%), Postives = 77/133 (57.89%), Query Frame = 0
Query: 1 MPHSAVFNALLAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPPPPPTPSHET 60
+PH + ++ AALL +AAA +P PSPAP +P SPSP + +P P P P+PS
Sbjct: 210 VPHLKGYEEVMGAALLTAAAAPAPTPSPAPKPSPSPSPSPSPKPSPSPSPSPKPSPSPSP 269
Query: 61 KPTPLSSYPAPAPSPTSVPPAAHHHTPSARPVSPPLPQSPSPSALPVPSPSPSSSWIAGP 120
P+P S P+P+PSP+ P + +PS P P P SPSPS P PSP PS S P
Sbjct: 270 SPSP-SPSPSPSPSPSPSPSPSPSPSPSPSPSPSPSP-SPSPSPSPSPSPKPSPSPSPSP 329
Query: 121 -PSEVPAPSKAKS 133
PS P+PS + S
Sbjct: 330 SPSPSPSPSPSPS 340
BLAST of CmUC09G175710 vs. ExPASy TrEMBL
Match:
A0A5A7V3Q7 (Classical arabinogalactan protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold652G00010 PE=4 SV=1)
HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 73/196 (37.24%), Postives = 89/196 (45.41%), Query Frame = 0
Query: 1 MPHSAVFNALLAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPP--------- 60
M S + N L A LL SAAA+SP PSPAPS + SP W+WTP +PP
Sbjct: 1 MASSTLLNLLTLAFLLISAAANSPAPSPAPS-----AESPTWKWTPTNQPPSSPPTAEPP 60
Query: 61 ------------PPPTPSHETKPTPLSSYPAPAP-------SPTSVPPA--AHHHTPSAR 120
PP TP E P P S P P SPT+ PPA + H PS
Sbjct: 61 MTTTSPPSPTISPPATPP-ELSPVPSSYSPTSPPMANPPTLSPTAPPPAVTSPSHAPSPA 120
Query: 121 PVSPPLPQ----SPSPSALPVPS-------PSPSSSWIAGPPSEVPAPSKAKSDAFNNKF 156
P P SP+P+ P S PSP+ PSE PAPSK + A N+F
Sbjct: 121 KTKAPAPAPSKISPAPAKAPKSSKAPVSSPPSPNGQMEPPTPSEAPAPSKEGNGAGANRF 180
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038887113.1 | 3.1e-43 | 75.00 | anther-specific proline-rich protein APG-like [Benincasa hispida] | [more] |
XP_011659717.1 | 4.0e-30 | 64.74 | vegetative cell wall protein gp1 [Cucumis sativus] >KGN43745.1 hypothetical prot... | [more] |
XP_022141995.1 | 8.9e-22 | 59.60 | extensin-like [Momordica charantia] | [more] |
KAG6576849.1 | 1.2e-05 | 39.67 | hypothetical protein SDJN03_24423, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG7014869.1 | 1.2e-05 | 39.67 | hypothetical protein SDJN02_22499, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
Match Name | E-value | Identity | Description | |
Q9FPQ6 | 2.1e-05 | 45.30 | Vegetative cell wall protein gp1 OS=Chlamydomonas reinhardtii OX=3055 GN=GP1 PE=... | [more] |
O10341 | 2.7e-05 | 48.11 | Uncharacterized 29.3 kDa protein OS=Orgyia pseudotsugata multicapsid polyhedrosi... | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0K238 | 1.9e-30 | 64.74 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064060 PE=4 SV=1 | [more] |
A0A6J1CJN4 | 4.3e-22 | 59.60 | extensin-like OS=Momordica charantia OX=3673 GN=LOC111012233 PE=4 SV=1 | [more] |
A0A6J1E3R0 | 9.6e-06 | 38.04 | extensin-like OS=Cucurbita moschata OX=3662 GN=LOC111430527 PE=4 SV=1 | [more] |
A0A2K3CSD7 | 1.6e-05 | 44.36 | Uncharacterized protein OS=Chlamydomonas reinhardtii OX=3055 GN=CHLRE_16g693600v... | [more] |
A0A5A7V3Q7 | 1.1e-04 | 37.24 | Classical arabinogalactan protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5... | [more] |
Match Name | E-value | Identity | Description | |