CmUC09G175710 (gene) Watermelon (USVL531) v1

Overview
NameCmUC09G175710
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
Descriptionextensin-like
LocationCmU531Chr09: 28962124 .. 28962591 (+)
RNA-Seq ExpressionCmUC09G175710
SyntenyCmUC09G175710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCACTCTGCCGTTTTCAACGCCCTTTTGGCGGCGGCGCTGCTCTTCTCCGCCGCCGCTCACTCGCCGGTTCCGTCACCGGCCCCGTCGCGCACTCCCCCGGCCTCCCCTTCCCCTCCCTGGAGATGGACCCCCATCACCAAGCCTCCTCCACCCCCAACGCCGTCGCATGAGACCAAACCCACTCCACTGTCGTCGTATCCGGCACCGGCACCGTCCCCTACTTCCGTTCCACCGGCAGCCCATCACCATACACCATCTGCTCGTCCAGTTTCCCCGCCGCTGCCACAGAGCCCTTCTCCGTCCGCGCTGCCAGTACCGTCTCCGTCTCCATCTTCGTCGTGGATCGCCGGTCCGCCGTCGGAAGTACCGGCGCCGTCGAAAGCGAAGAGCGATGCCTTTAATAACAAATTCTCGGTGGTGAGATCGGTGGCTATTGGAGCCATGGCTGCTGCTCTGCTTTAA

mRNA sequence

ATGCCTCACTCTGCCGTTTTCAACGCCCTTTTGGCGGCGGCGCTGCTCTTCTCCGCCGCCGCTCACTCGCCGGTTCCGTCACCGGCCCCGTCGCGCACTCCCCCGGCCTCCCCTTCCCCTCCCTGGAGATGGACCCCCATCACCAAGCCTCCTCCACCCCCAACGCCGTCGCATGAGACCAAACCCACTCCACTGTCGTCGTATCCGGCACCGGCACCGTCCCCTACTTCCGTTCCACCGGCAGCCCATCACCATACACCATCTGCTCGTCCAGTTTCCCCGCCGCTGCCACAGAGCCCTTCTCCGTCCGCGCTGCCAGTACCGTCTCCGTCTCCATCTTCGTCGTGGATCGCCGGTCCGCCGTCGGAAGTACCGGCGCCGTCGAAAGCGAAGAGCGATGCCTTTAATAACAAATTCTCGGTGGTGAGATCGGTGGCTATTGGAGCCATGGCTGCTGCTCTGCTTTAA

Coding sequence (CDS)

ATGCCTCACTCTGCCGTTTTCAACGCCCTTTTGGCGGCGGCGCTGCTCTTCTCCGCCGCCGCTCACTCGCCGGTTCCGTCACCGGCCCCGTCGCGCACTCCCCCGGCCTCCCCTTCCCCTCCCTGGAGATGGACCCCCATCACCAAGCCTCCTCCACCCCCAACGCCGTCGCATGAGACCAAACCCACTCCACTGTCGTCGTATCCGGCACCGGCACCGTCCCCTACTTCCGTTCCACCGGCAGCCCATCACCATACACCATCTGCTCGTCCAGTTTCCCCGCCGCTGCCACAGAGCCCTTCTCCGTCCGCGCTGCCAGTACCGTCTCCGTCTCCATCTTCGTCGTGGATCGCCGGTCCGCCGTCGGAAGTACCGGCGCCGTCGAAAGCGAAGAGCGATGCCTTTAATAACAAATTCTCGGTGGTGAGATCGGTGGCTATTGGAGCCATGGCTGCTGCTCTGCTTTAA

Protein sequence

MPHSAVFNALLAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPPPPPTPSHETKPTPLSSYPAPAPSPTSVPPAAHHHTPSARPVSPPLPQSPSPSALPVPSPSPSSSWIAGPPSEVPAPSKAKSDAFNNKFSVVRSVAIGAMAAALL
Homology
BLAST of CmUC09G175710 vs. NCBI nr
Match: XP_038887113.1 (anther-specific proline-rich protein APG-like [Benincasa hispida])

HSP 1 Score: 185.7 bits (470), Expect = 3.1e-43
Identity = 117/156 (75.00%), Postives = 123/156 (78.85%), Query Frame = 0

Query: 1   MPHSAVFNALLAAALLFS-AAAHSPVPSPAPSRTPPASPSPPWRWTPITKPPPPPTPSHE 60
           MPHSA+ NALLAAALLFS AAA +P PSPAP  TPPASPSPPWRWTPITKPPP  TPSHE
Sbjct: 1   MPHSALLNALLAAALLFSAAAAPAPAPSPAPLHTPPASPSPPWRWTPITKPPPSSTPSHE 60

Query: 61  TKPTPLSSYPAPAPSPTSVPPAAHHHTPSARPVSPPLPQSPSPSALPVPSPSPSSSWIAG 120
           +KPTP  S P P PSPT V P  HHH P+ RPVS PL +SPS      PSPSPS SWIA 
Sbjct: 61  SKPTPPPSSPPPTPSPTPVLPPHHHHAPTERPVSLPLQKSPS------PSPSPSPSWIAV 120

Query: 121 PPSEVPAPSKAKSDAFNNKFSVVRSVAIGAMAAALL 156
           PP E PAPSKAKSDAFNN+FSVV SVAI AMAAALL
Sbjct: 121 PPPEAPAPSKAKSDAFNNRFSVVASVAIDAMAAALL 150

BLAST of CmUC09G175710 vs. NCBI nr
Match: XP_011659717.1 (vegetative cell wall protein gp1 [Cucumis sativus] >KGN43745.1 hypothetical protein Csa_017249 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 4.0e-30
Identity = 101/156 (64.74%), Postives = 109/156 (69.87%), Query Frame = 0

Query: 1   MPHSAVFNALLAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPP-PPPTPSHE 60
           MPHS + NALLAAALLFSAAA SP PSP+P  TPPAS SPPWRW PITKPP  PPTPSHE
Sbjct: 1   MPHSLLLNALLAAALLFSAAAISPSPSPSP--TPPASLSPPWRWAPITKPPTQPPTPSHE 60

Query: 61  TKPTPLSSYPAPAPSPTSVPPAAHHHTPSARPVSPPLPQSPSPSALPVPSPSPSSSWIAG 120
           T+P+       P PSPTSVPP AHH  P              P+A P  SPSPS +WIA 
Sbjct: 61  TEPS------TPPPSPTSVPPPAHHDEP--------------PTAQP-DSPSPSPTWIAE 120

Query: 121 PPSEVPAPSKAKSDAFNNKFSVVRSVAIGAMAAALL 156
           PPSE  +PSKAKSD F N FS+V SVAIGAMAAA L
Sbjct: 121 PPSEALSPSKAKSDGFKNSFSMVGSVAIGAMAAAAL 133

BLAST of CmUC09G175710 vs. NCBI nr
Match: XP_022141995.1 (extensin-like [Momordica charantia])

HSP 1 Score: 114.4 bits (285), Expect = 8.9e-22
Identity = 90/151 (59.60%), Postives = 107/151 (70.86%), Query Frame = 0

Query: 11  LAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPPPPPT---PSHETKPTPLSS 70
           +AAALL SAAA    P PAPS +P A+PSPPWRWTP  KPP PPT   P+   +PTP SS
Sbjct: 1   MAAALLASAAA---APRPAPSPSPMATPSPPWRWTPNPKPPTPPTSSSPAPSPQPTPPSS 60

Query: 71  YPAPAPSPTS--VPPAAHHHTPSARPVS-PPLPQSPSPSALPVPSPSPSSSWIAGPPSEV 130
            PAP+PSPT+  VPPA     P+A PVS PP  QSP+P   P P+ +P+ SWIAGPP++ 
Sbjct: 61  -PAPSPSPTTAVVPPA----PPTAAPVSPPPQTQSPAPPVTPPPAQAPAPSWIAGPPADA 120

Query: 131 PAPSKAKSDAFNNKFSVVRSVAIGAMAAALL 156
            APSK KS+A  N+FS+V SV IGAMAAA L
Sbjct: 121 LAPSKHKSNALKNRFSLVGSVGIGAMAAAAL 143

BLAST of CmUC09G175710 vs. NCBI nr
Match: KAG6576849.1 (hypothetical protein SDJN03_24423, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-05
Identity = 73/184 (39.67%), Postives = 90/184 (48.91%), Query Frame = 0

Query: 1   MPHSAVFNALLAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPP------PPP 60
           M   AV N + AA LL SAAA+SP+PSPAPS       SPPW+WTP T+ P       PP
Sbjct: 1   MASFAVLNVITAALLLISAAANSPLPSPAPS-----PESPPWKWTPDTESPSSPPEMEPP 60

Query: 61  TPS---HETKPTPLSSYPAPAP-------SPTSVPPAAHH--HTPSARPVSPPLP----- 120
           +PS    E  P P S  P   P       SP ++PPA     H PS      P P     
Sbjct: 61  SPSVSPPELSPVPSSDTPTSPPDANPPTLSPAALPPAVKSPVHAPSPSKTKAPAPAPSKM 120

Query: 121 -----QSPSPSALPVPS-PSPSSSWIAGPPSEVPAPSKAKSDAFNNKFSVVRSVAIGAMA 156
                ++P  SA PV S P+P+       PS  P   KA +    N+F++  SVA G MA
Sbjct: 121 SPTPARAPKSSAPPVSSPPAPNGEMEPPTPSVAPTAPKADNGGAANRFAIRGSVAFGLMA 179

BLAST of CmUC09G175710 vs. NCBI nr
Match: KAG7014869.1 (hypothetical protein SDJN02_22499, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-05
Identity = 73/184 (39.67%), Postives = 90/184 (48.91%), Query Frame = 0

Query: 1   MPHSAVFNALLAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPP------PPP 60
           M   AV N + AA LL SAAA+SP+PSPAPS       SPPW+WTP T+ P       PP
Sbjct: 1   MASFAVLNVITAALLLISAAANSPLPSPAPS-----PESPPWKWTPDTESPSSPPEMEPP 60

Query: 61  TPS---HETKPTPLSSYPAPAP-------SPTSVPPAAHH--HTPSARPVSPPLP----- 120
           +PS    E  P P S  P   P       SP ++PPA     H PS      P P     
Sbjct: 61  SPSVSPPELSPVPSSDTPTSPPDANPPTLSPAALPPAVKSPVHAPSPSKTKAPAPAPSKM 120

Query: 121 -----QSPSPSALPVPS-PSPSSSWIAGPPSEVPAPSKAKSDAFNNKFSVVRSVAIGAMA 156
                ++P  SA PV S P+P+       PS  P   KA +    N+F++  SVA G MA
Sbjct: 121 SPTPARAPKSSAPPVSSPPAPNGEMEPPTPSVAPTAPKADNGGAANRFAIGGSVAFGLMA 179

BLAST of CmUC09G175710 vs. ExPASy Swiss-Prot
Match: Q9FPQ6 (Vegetative cell wall protein gp1 OS=Chlamydomonas reinhardtii OX=3055 GN=GP1 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.1e-05
Identity = 53/117 (45.30%), Postives = 64/117 (54.70%), Query Frame = 0

Query: 24  PVPSPAPSRTPPASPSPPWRWT---PITKPPPPPTPSHETKPTPLS-SYPAPA-PSPTSV 83
           P P P PS  PP  P PP+      P + P PPP+P+  T PTP S S P+P  PSP  V
Sbjct: 262 PAPPPPPSPPPPPPPRPPFPANTPMPPSPPSPPPSPAPPTPPTPPSPSPPSPVPPSPAPV 321

Query: 84  PPAAHHHTPSARPVSPPLPQSPSPSALPVPSPSPSSSWIAGP---PSEVPAPSKAKS 133
           PP+    +P+  P   P P +PSPS  P PSPSPS S    P   PS +P+PS   S
Sbjct: 322 PPSPAPPSPAPSPPPSPAPPTPSPSPSPSPSPSPSPSPSPSPSPSPSPIPSPSPKPS 378

BLAST of CmUC09G175710 vs. ExPASy Swiss-Prot
Match: O10341 (Uncharacterized 29.3 kDa protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus OX=262177 GN=ORF92 PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.7e-05
Identity = 51/106 (48.11%), Postives = 58/106 (54.72%), Query Frame = 0

Query: 23  SPVPSPAPSRTPPASPSPPWRWTPITKPPPPPTPSHETKPTPLSSYPAPAPSPTSVPPAA 82
           SP PSP P+ +P  SP+P    TP   P P PTPS    PTP  S P P PSPT  P  +
Sbjct: 88  SPTPSPTPTPSPTPSPTPSPTPTPSPTPSPTPTPSPTPSPTPTPS-PTPTPSPTPSPTPS 147

Query: 83  HHHTPSARPVSPPLPQSPSPSALPVPSPSPSSSWIAGPPSEVPAPS 129
              TPS  P   P P SP+PS  P PSP+PS +    PPS  P PS
Sbjct: 148 PTPTPSPTPSPTPTP-SPTPSPTPTPSPTPSPT---PPPSPTPPPS 188

BLAST of CmUC09G175710 vs. ExPASy TrEMBL
Match: A0A0A0K238 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064060 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.9e-30
Identity = 101/156 (64.74%), Postives = 109/156 (69.87%), Query Frame = 0

Query: 1   MPHSAVFNALLAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPP-PPPTPSHE 60
           MPHS + NALLAAALLFSAAA SP PSP+P  TPPAS SPPWRW PITKPP  PPTPSHE
Sbjct: 1   MPHSLLLNALLAAALLFSAAAISPSPSPSP--TPPASLSPPWRWAPITKPPTQPPTPSHE 60

Query: 61  TKPTPLSSYPAPAPSPTSVPPAAHHHTPSARPVSPPLPQSPSPSALPVPSPSPSSSWIAG 120
           T+P+       P PSPTSVPP AHH  P              P+A P  SPSPS +WIA 
Sbjct: 61  TEPS------TPPPSPTSVPPPAHHDEP--------------PTAQP-DSPSPSPTWIAE 120

Query: 121 PPSEVPAPSKAKSDAFNNKFSVVRSVAIGAMAAALL 156
           PPSE  +PSKAKSD F N FS+V SVAIGAMAAA L
Sbjct: 121 PPSEALSPSKAKSDGFKNSFSMVGSVAIGAMAAAAL 133

BLAST of CmUC09G175710 vs. ExPASy TrEMBL
Match: A0A6J1CJN4 (extensin-like OS=Momordica charantia OX=3673 GN=LOC111012233 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 4.3e-22
Identity = 90/151 (59.60%), Postives = 107/151 (70.86%), Query Frame = 0

Query: 11  LAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPPPPPT---PSHETKPTPLSS 70
           +AAALL SAAA    P PAPS +P A+PSPPWRWTP  KPP PPT   P+   +PTP SS
Sbjct: 1   MAAALLASAAA---APRPAPSPSPMATPSPPWRWTPNPKPPTPPTSSSPAPSPQPTPPSS 60

Query: 71  YPAPAPSPTS--VPPAAHHHTPSARPVS-PPLPQSPSPSALPVPSPSPSSSWIAGPPSEV 130
            PAP+PSPT+  VPPA     P+A PVS PP  QSP+P   P P+ +P+ SWIAGPP++ 
Sbjct: 61  -PAPSPSPTTAVVPPA----PPTAAPVSPPPQTQSPAPPVTPPPAQAPAPSWIAGPPADA 120

Query: 131 PAPSKAKSDAFNNKFSVVRSVAIGAMAAALL 156
            APSK KS+A  N+FS+V SV IGAMAAA L
Sbjct: 121 LAPSKHKSNALKNRFSLVGSVGIGAMAAAAL 143

BLAST of CmUC09G175710 vs. ExPASy TrEMBL
Match: A0A6J1E3R0 (extensin-like OS=Cucurbita moschata OX=3662 GN=LOC111430527 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 9.6e-06
Identity = 70/184 (38.04%), Postives = 92/184 (50.00%), Query Frame = 0

Query: 1   MPHSAVFNALLAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPP------PPP 60
           M   AV N + AA LL SA+A+SP+PSPAPS       SPPW+WTP T  P       PP
Sbjct: 1   MASFAVLNVITAALLLISASANSPLPSPAPS-----PESPPWKWTPDTDSPSSPPEMEPP 60

Query: 61  TPS---HETKPTPLSSYPAPAP-------SPTSVPPAAHH--HTPSARPVSPPLPQSPSP 120
           +PS    E  P P S  P   P       SP ++PPA     H PS      P P     
Sbjct: 61  SPSVSPPELSPVPSSDTPTSPPDANPPTLSPAALPPAVKSPVHAPSPSKTKAPAPAPSKM 120

Query: 121 SALPVPSPSPSSSWIAGPPS-----EVPAPS------KAKSDAFNNKFSVVRSVAIGAMA 156
           S+ P  +P  S++ ++ PP+     E P PS      KA++    N+F++  +VA G MA
Sbjct: 121 SSTPARAPKSSAAPVSSPPAPNGEMEPPTPSVAPTAPKAENGGAANRFAIGGTVAFGLMA 179

BLAST of CmUC09G175710 vs. ExPASy TrEMBL
Match: A0A2K3CSD7 (Uncharacterized protein OS=Chlamydomonas reinhardtii OX=3055 GN=CHLRE_16g693600v5 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.6e-05
Identity = 59/133 (44.36%), Postives = 77/133 (57.89%), Query Frame = 0

Query: 1   MPHSAVFNALLAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPPPPPTPSHET 60
           +PH   +  ++ AALL +AAA +P PSPAP  +P  SPSP  + +P   P P P+PS   
Sbjct: 210 VPHLKGYEEVMGAALLTAAAAPAPTPSPAPKPSPSPSPSPSPKPSPSPSPSPKPSPSPSP 269

Query: 61  KPTPLSSYPAPAPSPTSVPPAAHHHTPSARPVSPPLPQSPSPSALPVPSPSPSSSWIAGP 120
            P+P S  P+P+PSP+  P  +   +PS  P   P P SPSPS  P PSP PS S    P
Sbjct: 270 SPSP-SPSPSPSPSPSPSPSPSPSPSPSPSPSPSPSP-SPSPSPSPSPSPKPSPSPSPSP 329

Query: 121 -PSEVPAPSKAKS 133
            PS  P+PS + S
Sbjct: 330 SPSPSPSPSPSPS 340

BLAST of CmUC09G175710 vs. ExPASy TrEMBL
Match: A0A5A7V3Q7 (Classical arabinogalactan protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold652G00010 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 73/196 (37.24%), Postives = 89/196 (45.41%), Query Frame = 0

Query: 1   MPHSAVFNALLAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPP--------- 60
           M  S + N L  A LL SAAA+SP PSPAPS     + SP W+WTP  +PP         
Sbjct: 1   MASSTLLNLLTLAFLLISAAANSPAPSPAPS-----AESPTWKWTPTNQPPSSPPTAEPP 60

Query: 61  ------------PPPTPSHETKPTPLSSYPAPAP-------SPTSVPPA--AHHHTPSAR 120
                       PP TP  E  P P S  P   P       SPT+ PPA  +  H PS  
Sbjct: 61  MTTTSPPSPTISPPATPP-ELSPVPSSYSPTSPPMANPPTLSPTAPPPAVTSPSHAPSPA 120

Query: 121 PVSPPLPQ----SPSPSALPVPS-------PSPSSSWIAGPPSEVPAPSKAKSDAFNNKF 156
               P P     SP+P+  P  S       PSP+       PSE PAPSK  + A  N+F
Sbjct: 121 KTKAPAPAPSKISPAPAKAPKSSKAPVSSPPSPNGQMEPPTPSEAPAPSKEGNGAGANRF 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038887113.13.1e-4375.00anther-specific proline-rich protein APG-like [Benincasa hispida][more]
XP_011659717.14.0e-3064.74vegetative cell wall protein gp1 [Cucumis sativus] >KGN43745.1 hypothetical prot... [more]
XP_022141995.18.9e-2259.60extensin-like [Momordica charantia][more]
KAG6576849.11.2e-0539.67hypothetical protein SDJN03_24423, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7014869.11.2e-0539.67hypothetical protein SDJN02_22499, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Q9FPQ62.1e-0545.30Vegetative cell wall protein gp1 OS=Chlamydomonas reinhardtii OX=3055 GN=GP1 PE=... [more]
O103412.7e-0548.11Uncharacterized 29.3 kDa protein OS=Orgyia pseudotsugata multicapsid polyhedrosi... [more]
Match NameE-valueIdentityDescription
A0A0A0K2381.9e-3064.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064060 PE=4 SV=1[more]
A0A6J1CJN44.3e-2259.60extensin-like OS=Momordica charantia OX=3673 GN=LOC111012233 PE=4 SV=1[more]
A0A6J1E3R09.6e-0638.04extensin-like OS=Cucurbita moschata OX=3662 GN=LOC111430527 PE=4 SV=1[more]
A0A2K3CSD71.6e-0544.36Uncharacterized protein OS=Chlamydomonas reinhardtii OX=3055 GN=CHLRE_16g693600v... [more]
A0A5A7V3Q71.1e-0437.24Classical arabinogalactan protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..134
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..115

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC09G175710.1CmUC09G175710.1mRNA