CmUC09G174780 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC09G174780
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	CmU531Chr09: 25384861 .. 25385115 (+)
RNA-Seq Expression	CmUC09G174780
Synteny	CmUC09G174780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCATGCGCATTTACTATGATAACAAGGCATCAATCTCCATTGCCCACAATCCAGTCCTTCATGATATTATGAAACATATTAAAGTCGATAAACATTTTATAAACGAGAAGATTGATGCAGGAGTAATATGCATTCCCTACCTTCCGACAACAGAGCAAATTGCAGATGTATTAACTAAAGGTCTTCCTAAGTGGCAATTCAACAAGTTGATTGACAAGCTAACCATGAATGATATCTTCAAACTAGCTTGA

mRNA sequence

ATGCCCATGCGCATTTACTATGATAACAAGGCATCAATCTCCATTGCCCACAATCCAGTCCTTCATGATATTATGAAACATATTAAAGTCGATAAACATTTTATAAACGAGAAGATTGATGCAGGAGTAATATGCATTCCCTACCTTCCGACAACAGAGCAAATTGCAGATGTATTAACTAAAGGTCTTCCTAAGTGGCAATTCAACAAGTTGATTGACAAGCTAACCATGAATGATATCTTCAAACTAGCTTGA

Coding sequence (CDS)

ATGCCCATGCGCATTTACTATGATAACAAGGCATCAATCTCCATTGCCCACAATCCAGTCCTTCATGATATTATGAAACATATTAAAGTCGATAAACATTTTATAAACGAGAAGATTGATGCAGGAGTAATATGCATTCCCTACCTTCCGACAACAGAGCAAATTGCAGATGTATTAACTAAAGGTCTTCCTAAGTGGCAATTCAACAAGTTGATTGACAAGCTAACCATGAATGATATCTTCAAACTAGCTTGA

Protein sequence

MPMRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA

Homology

[Close]

BLAST of CmUC09G174780 vs. NCBI nr
Match: KAA0061370.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK14725.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 131.0 bits (328), Expect = 5.0e-27
Identity = 63/82 (76.83%), Postives = 69/82 (84.15%), Query Frame = 0


Query: 3   MRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTKG 62
           +RIY DNKA+ISI HNPVLHD  KHI+VDKHFI EKI AG IC+PYLPT EQI DVLTKG
Sbjct: 39  IRIYCDNKAAISIDHNPVLHDRTKHIEVDKHFIEEKIKAGTICVPYLPTLEQIVDVLTKG 98

Query: 63  LPKWQFNKLIDKLTMNDIFKLA 85
           LPK QF++LIDKL M DIFK A
Sbjct: 99  LPKNQFDRLIDKLAMEDIFKPA 120

[Close]

BLAST of CmUC09G174780 vs. NCBI nr
Match: RVW80855.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 126.7 bits (317), Expect = 9.3e-26
Identity = 55/84 (65.48%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 1   MPMRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLT 60
           +PM+++ DNKA I+I HNPVLHD  KH++VDKHFI EK++ G+I +PY+PT EQ+AD+LT
Sbjct: 265 LPMKVFCDNKAVIAIVHNPVLHDRTKHVEVDKHFIKEKLENGLIVMPYIPTVEQVADILT 324

Query: 61  KGLPKWQFNKLIDKLTMNDIFKLA 85
           KGLPK QF+ L+ KL MNDIFKLA
Sbjct: 325 KGLPKKQFDDLVSKLVMNDIFKLA 348

[Close]

BLAST of CmUC09G174780 vs. NCBI nr
Match: CAN61703.1 (hypothetical protein VITISV_026977 [Vitis vinifera])

HSP 1 Score: 125.2 bits (313), Expect = 2.7e-25
Identity = 53/84 (63.10%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 1   MPMRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLT 60
           +PM+++ DNKA+I+IAHNP+LHD  KH++VDKHF+ EK++ G+IC  Y+PT EQ+AD+LT
Sbjct: 560 LPMKVFCDNKAAIAIAHNPILHDRTKHVEVDKHFMKEKLEEGLICTSYIPTDEQVADILT 619

Query: 61  KGLPKWQFNKLIDKLTMNDIFKLA 85
           KGLPK QF+KL+ KL M DIFK A
Sbjct: 620 KGLPKKQFDKLVSKLAMEDIFKPA 643

[Close]

BLAST of CmUC09G174780 vs. NCBI nr
Match: XP_040996179.1 (uncharacterized protein LOC121242374 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 125.2 bits (313), Expect = 2.7e-25
Identity = 57/84 (67.86%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 1   MPMRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLT 60
           +PM++Y DNKA+ISIAHNPVLHD  KH++VD+HFI EK+D+G+IC+PY+ T EQIADV T
Sbjct: 295 LPMKLYRDNKAAISIAHNPVLHDKTKHVEVDRHFIKEKLDSGLICMPYISTAEQIADVFT 354

Query: 61  KGLPKWQFNKLIDKLTMNDIFKLA 85
           KGL K QF+ L+ KLTM DIFK A
Sbjct: 355 KGLHKKQFDVLMGKLTMEDIFKPA 378

[Close]

BLAST of CmUC09G174780 vs. NCBI nr
Match: RVX09086.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 124.8 bits (312), Expect = 3.6e-25
Identity = 55/83 (66.27%), Postives = 68/83 (81.93%), Query Frame = 0


Query: 2   PMRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTK 61
           PM++Y+DNKA+IS+ HNPVLHD  KH++VDKHFI EKID G++C+ Y+PT EQ+ADV TK
Sbjct: 252 PMKLYFDNKAAISVTHNPVLHDRTKHVEVDKHFIKEKIDNGLVCMTYIPTEEQVADVFTK 311

Query: 62  GLPKWQFNKLIDKLTMNDIFKLA 85
           GL K QFN L+ KL M DIFK A
Sbjct: 312 GLHKRQFNFLVGKLAMEDIFKPA 334

[Close]

BLAST of CmUC09G174780 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 79.0 bits (193), Expect = 2.9e-14
Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 0


Query: 2    PMRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTK 61
            P++IY DN+  ISIA+NP  H   KHI +  HF  E++   VIC+ Y+PT  Q+AD+ TK
Sbjct: 1325 PIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTK 1384

Query: 62   GLPKWQFNKLIDKL 76
             LP  +F +L DKL
Sbjct: 1385 PLPAARFVELRDKL 1398

[Close]

BLAST of CmUC09G174780 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.8e-09
Identity = 28/74 (37.84%), Postives = 42/74 (56.76%), Query Frame = 0


Query: 2    PMRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTK 61
            P  IY DN  +  +  NPV H  MKHI +D HFI  ++ +G + + ++ T +Q+AD LTK
Sbjct: 1385 PPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTK 1444

Query: 62   GLPKWQFNKLIDKL 76
             L +  F     K+
Sbjct: 1445 PLSRTAFQNFASKI 1458

[Close]

BLAST of CmUC09G174780 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-08
Identity = 28/74 (37.84%), Postives = 42/74 (56.76%), Query Frame = 0


Query: 2    PMRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTK 61
            P  IY DN  +  +  NPV H  MKHI +D HFI  ++ +G + + ++ T +Q+AD LTK
Sbjct: 1368 PPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTK 1427

Query: 62   GLPKWQFNKLIDKL 76
             L +  F     K+
Sbjct: 1428 PLSRVAFQNFSRKI 1441

[Close]

BLAST of CmUC09G174780 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.6e-04
Identity = 22/64 (34.38%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 5    IYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTKGLP 64
            +Y D++++I ++ N + H   KHI V  H+I E +D   + +  + T E  AD+LTK +P
Sbjct: 1253 VYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVP 1312

Query: 65   KWQF 69
            + +F
Sbjct: 1313 RNKF 1316

[Close]

BLAST of CmUC09G174780 vs. ExPASy TrEMBL
Match: A0A5D3CT98 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold692G00570 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.4e-27
Identity = 63/82 (76.83%), Postives = 69/82 (84.15%), Query Frame = 0


Query: 3   MRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTKG 62
           +RIY DNKA+ISI HNPVLHD  KHI+VDKHFI EKI AG IC+PYLPT EQI DVLTKG
Sbjct: 39  IRIYCDNKAAISIDHNPVLHDRTKHIEVDKHFIEEKIKAGTICVPYLPTLEQIVDVLTKG 98

Query: 63  LPKWQFNKLIDKLTMNDIFKLA 85
           LPK QF++LIDKL M DIFK A
Sbjct: 99  LPKNQFDRLIDKLAMEDIFKPA 120

[Close]

BLAST of CmUC09G174780 vs. ExPASy TrEMBL
Match: A0A2N9EE05 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS847 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.7e-26
Identity = 58/84 (69.05%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 1    MPMRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLT 60
            +PM++Y DNKA+ISIAHNPVLHD  KH++VDKHFI EK+++G+IC+PY+PT EQIADV T
Sbjct: 1102 LPMKLYCDNKAAISIAHNPVLHDRTKHVEVDKHFIKEKLESGLICMPYIPTAEQIADVFT 1161

Query: 61   KGLPKWQFNKLIDKLTMNDIFKLA 85
            KGL K QF+ L+ KLTM DIFK A
Sbjct: 1162 KGLHKKQFDILMGKLTMEDIFKPA 1185

[Close]

BLAST of CmUC09G174780 vs. ExPASy TrEMBL
Match: A0A2N9G304 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21755 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.7e-26
Identity = 57/84 (67.86%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 1   MPMRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLT 60
           +PM++Y DNKA+ISIAHNPVLHD  KH++VDKHFI EK+++G+IC+PY+PT EQIAD+ T
Sbjct: 747 LPMKLYCDNKAAISIAHNPVLHDRTKHVEVDKHFIKEKLESGLICMPYIPTAEQIADIFT 806

Query: 61  KGLPKWQFNKLIDKLTMNDIFKLA 85
           KGL K QF+ L+ KLTM DIFK A
Sbjct: 807 KGLHKKQFDVLMGKLTMEDIFKPA 830

[Close]

BLAST of CmUC09G174780 vs. ExPASy TrEMBL
Match: A0A438H8N5 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_2982 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.5e-26
Identity = 55/84 (65.48%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 1   MPMRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLT 60
           +PM+++ DNKA I+I HNPVLHD  KH++VDKHFI EK++ G+I +PY+PT EQ+AD+LT
Sbjct: 265 LPMKVFCDNKAVIAIVHNPVLHDRTKHVEVDKHFIKEKLENGLIVMPYIPTVEQVADILT 324

Query: 61  KGLPKWQFNKLIDKLTMNDIFKLA 85
           KGLPK QF+ L+ KL MNDIFKLA
Sbjct: 325 KGLPKKQFDDLVSKLVMNDIFKLA 348

[Close]

BLAST of CmUC09G174780 vs. ExPASy TrEMBL
Match: A0A1S8ACK5 (Cysteine-rich RLK RECEPTOR-like protein kinase OS=Citrus limon OX=2708 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 7.7e-26
Identity = 57/84 (67.86%), Postives = 70/84 (83.33%), Query Frame = 0


Query: 1   MPMRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLT 60
           +P++IY DNKA+ISIAHNPVLHD  KHI+VDKHFI EKI++GVIC+PY+PT +QIAD+LT
Sbjct: 481 LPVKIYCDNKAAISIAHNPVLHDRTKHIEVDKHFIKEKIESGVICVPYVPTAQQIADILT 540

Query: 61  KGLPKWQFNKLIDKLTMNDIFKLA 85
           KGL K  F  L+ KL M DI+K A
Sbjct: 541 KGLHKGHFELLVSKLAMEDIYKPA 564

The following BLAST results are available for this feature:

BLAST of CmUC09G174780 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061370.1	5.0e-27	76.83	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK14725.1 putative m...	[more]
RVW80855.1	9.3e-26	65.48	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
CAN61703.1	2.7e-25	63.10	hypothetical protein VITISV_026977 [Vitis vinifera]	[more]
XP_040996179.1	2.7e-25	67.86	uncharacterized protein LOC121242374 [Juglans microcarpa x Juglans regia]	[more]
RVX09086.1	3.6e-25	66.27	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]

BLAST of CmUC09G174780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04146	2.9e-14	48.65	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	2.8e-09	37.84	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.4e-08	37.84	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	1.6e-04	34.38	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of CmUC09G174780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CT98	2.4e-27	76.83	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A2N9EE05	2.7e-26	69.05	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS847 PE=4 SV=1	[more]
A0A2N9G304	2.7e-26	67.86	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]
A0A438H8N5	4.5e-26	65.48	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A1S8ACK5	7.7e-26	67.86	Cysteine-rich RLK RECEPTOR-like protein kinase OS=Citrus limon OX=2708 PE=4 SV=1	[more]

BLAST of CmUC09G174780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF343	SUBFAMILY NOT NAMED	coord: 3..77
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 3..77
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 2..65 e-value: 6.50868E-29 score: 98.6945

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC09G174780.1	CmUC09G174780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0050790	regulation of catalytic activity
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005096	GTPase activator activity
molecular_function	GO:0003676	nucleic acid binding