CmUC09G173010 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC09G173010
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Ribonuclease H
Location	CmU531Chr09: 16445011 .. 16445421 (+)
RNA-Seq Expression	CmUC09G173010
Synteny	CmUC09G173010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTAATTGGGCCCATTGAGCCAAGGGCATCAAATGGTCATCGATTCATTTTGGTAGCCATAGACTACTTTATTAAGTGGGTGGAGGCTCCCTCGTACAAGAGTGTTACCAAGCAAGCTGTTGTCAAGTTCATAAGAAAGGACATTATATGTCGGTATGGCTTGCCTGAACGTATCATCACTGATAATGGGAGGAACTTAAATAACAAATTGACGGAGGAATTGTGTACCCAATTCAAAGTCAAACATTCTAATTCTACTCCTTACCGCCGTAAGATGAACGGAGCAGTGGAGGCGACAAATAAAAATATCAAGAGAATTATTGAGAAGATGACGGTCACATATAAAGATTGGCATGAAATGTTACCTTTGCGCTACACGGTTACCGAACATCAGTTCGTACATTGA

mRNA sequence

ATGGATGTAATTGGGCCCATTGAGCCAAGGGCATCAAATGGTCATCGATTCATTTTGGTAGCCATAGACTACTTTATTAAGTGGGTGGAGGCTCCCTCGTACAAGAGTGTTACCAAGCAAGCTGTTGTCAAGTTCATAAGAAAGGACATTATATGTCGGTATGGCTTGCCTGAACGTATCATCACTGATAATGGGAGGAACTTAAATAACAAATTGACGGAGGAATTGTGTACCCAATTCAAAGTCAAACATTCTAATTCTACTCCTTACCGCCGTAAGATGAACGGAGCAGTGGAGGCGACAAATAAAAATATCAAGAGAATTATTGAGAAGATGACGGTCACATATAAAGATTGGCATGAAATGTTACCTTTGCGCTACACGGTTACCGAACATCAGTTCGTACATTGA

Coding sequence (CDS)

ATGGATGTAATTGGGCCCATTGAGCCAAGGGCATCAAATGGTCATCGATTCATTTTGGTAGCCATAGACTACTTTATTAAGTGGGTGGAGGCTCCCTCGTACAAGAGTGTTACCAAGCAAGCTGTTGTCAAGTTCATAAGAAAGGACATTATATGTCGGTATGGCTTGCCTGAACGTATCATCACTGATAATGGGAGGAACTTAAATAACAAATTGACGGAGGAATTGTGTACCCAATTCAAAGTCAAACATTCTAATTCTACTCCTTACCGCCGTAAGATGAACGGAGCAGTGGAGGCGACAAATAAAAATATCAAGAGAATTATTGAGAAGATGACGGTCACATATAAAGATTGGCATGAAATGTTACCTTTGCGCTACACGGTTACCGAACATCAGTTCGTACATTGA

Protein sequence

MDVIGPIEPRASNGHRFILVAIDYFIKWVEAPSYKSVTKQAVVKFIRKDIICRYGLPERIITDNGRNLNNKLTEELCTQFKVKHSNSTPYRRKMNGAVEATNKNIKRIIEKMTVTYKDWHEMLPLRYTVTEHQFVH

Homology

[Close]

BLAST of CmUC09G173010 vs. NCBI nr
Match: KAA0065292.1 (RNA-directed DNA polymerase [Cucumis melo var. makuwa])

HSP 1 Score: 234.2 bits (596), Expect = 6.7e-58
Identity = 110/124 (88.71%), Postives = 117/124 (94.35%), Query Frame = 0


Query: 1   MDVIGPIEPRASNGHRFILVAIDYFIKWVEAPSYKSVTKQAVVKFIRKDIICRYGLPERI 60
           +DVIGPIEP+ASNGHRFILVAIDYF KWVEA SYKSVTKQAVVKFIRKDIICRYGLPERI
Sbjct: 123 LDVIGPIEPKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKFIRKDIICRYGLPERI 182

Query: 61  ITDNGRNLNNKLTEELCTQFKVKHSNSTPYRRKMNGAVEATNKNIKRIIEKMTVTYKDWH 120
           ITDNG+NLNNKL EELC QFKVKHSNSTPYR KMNGAVE  NKNIK+I+EKM+VTY+DWH
Sbjct: 183 ITDNGKNLNNKLMEELCNQFKVKHSNSTPYRPKMNGAVETANKNIKKILEKMSVTYRDWH 242

Query: 121 EMLP 125
           EMLP
Sbjct: 243 EMLP 246

[Close]

BLAST of CmUC09G173010 vs. NCBI nr
Match: KAA0045604.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK02653.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 222.2 bits (565), Expect = 2.6e-54
Identity = 105/124 (84.68%), Postives = 116/124 (93.55%), Query Frame = 0


Query: 1   MDVIGPIEPRASNGHRFILVAIDYFIKWVEAPSYKSVTKQAVVKFIRKDIICRYGLPERI 60
           +DVIGPIEP+ASNGHRFILVAIDYF KWVE+ SY   TKQAVVKFIRKDIIC+YGLPERI
Sbjct: 60  LDVIGPIEPKASNGHRFILVAIDYFTKWVESASY---TKQAVVKFIRKDIICQYGLPERI 119

Query: 61  ITDNGRNLNNKLTEELCTQFKVKHSNSTPYRRKMNGAVEATNKNIKRIIEKMTVTYKDWH 120
           ITDNG+NLNNKL EELC+QFKVKHSNSTPYR KMNGAVEA NKNIK+I+EKM++TY+DWH
Sbjct: 120 ITDNGKNLNNKLMEELCSQFKVKHSNSTPYRPKMNGAVEAANKNIKKILEKMSITYRDWH 179

Query: 121 EMLP 125
           EMLP
Sbjct: 180 EMLP 180

[Close]

BLAST of CmUC09G173010 vs. NCBI nr
Match: KAA0049671.1 (uncharacterized protein E6C27_scaffold76G00060 [Cucumis melo var. makuwa] >TYK12201.1 uncharacterized protein E5676_scaffold106G001520 [Cucumis melo var. makuwa])

HSP 1 Score: 221.1 bits (562), Expect = 5.9e-54
Identity = 105/124 (84.68%), Postives = 115/124 (92.74%), Query Frame = 0


Query: 1    MDVIGPIEPRASNGHRFILVAIDYFIKWVEAPSYKSVTKQAVVKFIRKDIICRYGLPERI 60
            +DVIGPIEP+ASNGHRFILVAIDYF KWVEA SYKSVTKQAVVKFIRKDIICRY LPERI
Sbjct: 1002 LDVIGPIEPKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKFIRKDIICRYRLPERI 1061

Query: 61   ITDNGRNLNNKLTEELCTQFKVKHSNSTPYRRKMNGAVEATNKNIKRIIEKMTVTYKDWH 120
            I +NG+N+NNKL EELC+QFKVKHSNST YR KMN AVEA NKNIK+I+EKM+VTY+DWH
Sbjct: 1062 IINNGKNMNNKLMEELCSQFKVKHSNSTLYRPKMNEAVEAANKNIKKILEKMSVTYRDWH 1121

Query: 121  EMLP 125
            EMLP
Sbjct: 1122 EMLP 1125

[Close]

BLAST of CmUC09G173010 vs. NCBI nr
Match: XP_022150030.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111018303 [Momordica charantia])

HSP 1 Score: 220.3 bits (560), Expect = 1.0e-53
Identity = 103/124 (83.06%), Postives = 111/124 (89.52%), Query Frame = 0


Query: 1    MDVIGPIEPRASNGHRFILVAIDYFIKWVEAPSYKSVTKQAVVKFIRKDIICRYGLPERI 60
            MDVIGPIEP+ASNGHRFILVAIDYF KWVEA SY+ VTK  VVKFI+K+IICRYGLPE I
Sbjct: 1388 MDVIGPIEPKASNGHRFILVAIDYFTKWVEAASYRDVTKGVVVKFIKKEIICRYGLPETI 1447

Query: 61   ITDNGRNLNNKLTEELCTQFKVKHSNSTPYRRKMNGAVEATNKNIKRIIEKMTVTYKDWH 120
            I+DN RNLNNKL  ELC QFK+KH NSTPYR KMNGAVEA NKNIKRI+EKMTVTY+DWH
Sbjct: 1448 ISDNARNLNNKLMSELCEQFKIKHLNSTPYRPKMNGAVEAANKNIKRIVEKMTVTYRDWH 1507

Query: 121  EMLP 125
            EMLP
Sbjct: 1508 EMLP 1511

[Close]

BLAST of CmUC09G173010 vs. NCBI nr
Match: XP_022143495.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia])

HSP 1 Score: 215.7 bits (548), Expect = 2.5e-52
Identity = 101/124 (81.45%), Postives = 109/124 (87.90%), Query Frame = 0


Query: 1    MDVIGPIEPRASNGHRFILVAIDYFIKWVEAPSYKSVTKQAVVKFIRKDIICRYGLPERI 60
            MDVIGPIEP+ASNGHRFILVAIDYF  WVEA SY+ VTK  VVKFI+K+IICRYGLPE I
Sbjct: 1874 MDVIGPIEPKASNGHRFILVAIDYFTNWVEAASYRDVTKGVVVKFIKKEIICRYGLPETI 1933

Query: 61   ITDNGRNLNNKLTEELCTQFKVKHSNSTPYRRKMNGAVEATNKNIKRIIEKMTVTYKDWH 120
            I+DN RNLNNKL  ELC QFK+KH NSTPYR KMNGAVEA NKNIKRI+EKMTVTY+DWH
Sbjct: 1934 ISDNARNLNNKLXSELCEQFKIKHLNSTPYRPKMNGAVEAANKNIKRIVEKMTVTYRDWH 1993

Query: 121  EMLP 125
             MLP
Sbjct: 1994 GMLP 1997

[Close]

BLAST of CmUC09G173010 vs. ExPASy Swiss-Prot
Match: P03360 (Gag-Pol polyprotein (Fragment) OS=Avian reticuloendotheliosis virus OX=11636 GN=pol PE=1 SV=2)

HSP 1 Score: 83.6 bits (205), Expect = 1.9e-15
Identity = 45/115 (39.13%), Postives = 65/115 (56.52%), Query Frame = 0


Query: 11  ASNGHRFILVAIDYFIKWVEAPSYKSVTKQAVVKFIRKDIICRYGLPERIITDNGRNLNN 70
           A  G++++LV +D F  WVEA   K  T Q V+K +  DII R+GLP +I +DNG     
Sbjct: 881 AKGGYKYLLVLVDTFSGWVEAYPAKRETSQVVIKHLIHDIIPRFGLPVQIGSDNGPAFVA 940

Query: 71  KLTEELCTQFKVKHSNSTPYRRKMNGAVEATNKNIKRIIEKMTV-TYKDWHEMLP 125
           K+T++LC    V       YR + +G VE  N+ +K  I K+ + T  DW  +LP
Sbjct: 941 KVTQQLCEALNVSWKLHCAYRPQSSGQVERMNRTLKETIAKLRIETGGDWVSLLP 995

[Close]

BLAST of CmUC09G173010 vs. ExPASy Swiss-Prot
Match: P03359 (Gag-Pol polyprotein OS=Woolly monkey sarcoma virus OX=11970 GN=pol PE=3 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 7.6e-12
Identity = 41/114 (35.96%), Postives = 65/114 (57.02%), Query Frame = 0


Query: 14   GHRFILVAIDYFIKWVEAPSYKSVTKQAVVKFIRKDIICRYGLPERIITDNGRNLNNKLT 73
            G+R++LV ID F  WVEA   K+ T   V K I ++I+ R+G+P+ + +DNG     +++
Sbjct: 1415 GNRYLLVFIDTFSGWVEAFPTKTETALTVCKKILEEILPRFGIPKVLGSDNGPAFVAQVS 1474

Query: 74   EELCTQFKVKHSNSTPYRRKMNGAVEATNKNIKRIIEKMTVT--YKDWHEMLPL 126
            + L TQ  +       YR + +G VE  N+ IK  + K+ +    KDW  +LPL
Sbjct: 1475 QGLATQLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLALETGXKDWVALLPL 1528

[Close]

BLAST of CmUC09G173010 vs. ExPASy Swiss-Prot
Match: Q9TTC1 (Gag-Pol polyprotein OS=Koala retrovirus OX=394239 GN=pro-pol PE=3 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-11
Identity = 41/114 (35.96%), Postives = 65/114 (57.02%), Query Frame = 0


Query: 14   GHRFILVAIDYFIKWVEAPSYKSVTKQAVVKFIRKDIICRYGLPERIITDNGRNLNNKLT 73
            G+R++LV ID F  WVEA   K+ T   V K I ++I+ R+G+P+ + +DNG     +++
Sbjct: 1415 GNRYLLVFIDTFSGWVEAFPTKTETALTVCKKILEEILPRFGIPKVLGSDNGPAFVAQVS 1474

Query: 74   EELCTQFKVKHSNSTPYRRKMNGAVEATNKNIKRIIEKMTVTY--KDWHEMLPL 126
            + L TQ  +       YR + +G VE  N+ IK  + K+ +    KDW  +LPL
Sbjct: 1475 QGLATQLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLALETGGKDWVTLLPL 1528

[Close]

BLAST of CmUC09G173010 vs. ExPASy Swiss-Prot
Match: P10273 (Gag-Pol polyprotein OS=Feline leukemia virus OX=11768 GN=pol PE=3 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 2.2e-11
Identity = 38/114 (33.33%), Postives = 65/114 (57.02%), Query Frame = 0


Query: 14   GHRFILVAIDYFIKWVEAPSYKSVTKQAVVKFIRKDIICRYGLPERIITDNGRNLNNKLT 73
            G++++LV ID F  W EA   K  T + V K + ++I  RYG+P+ + +DNG    ++++
Sbjct: 1432 GYKYLLVFIDTFSGWAEAYPAKHETAKVVAKKLLEEIFPRYGIPQVLGSDNGPAFISQVS 1491

Query: 74   EELCTQFKVKHSNSTPYRRKMNGAVEATNKNIKRIIEKMTVT--YKDWHEMLPL 126
            + + T   +       YR + +G VE  N++IK  + K+T+    KDW  +LPL
Sbjct: 1492 QSVATLLGINWKLHCAYRPQSSGQVERMNRSIKETLTKLTLETGSKDWVLLLPL 1545

[Close]

BLAST of CmUC09G173010 vs. ExPASy Swiss-Prot
Match: P21414 (Gag-Pol polyprotein OS=Gibbon ape leukemia virus OX=11840 GN=pol PE=3 SV=2)

HSP 1 Score: 69.7 bits (169), Expect = 2.9e-11
Identity = 40/114 (35.09%), Postives = 65/114 (57.02%), Query Frame = 0


Query: 14   GHRFILVAIDYFIKWVEAPSYKSVTKQAVVKFIRKDIICRYGLPERIITDNGRNLNNKLT 73
            G++++LV ID F  WVEA   K+ T   V K I ++I+ R+G+P+ + +DNG     +++
Sbjct: 1414 GNKYLLVFIDTFSGWVEAFPTKTETALIVCKKILEEILPRFGIPKVLGSDNGPAFVAQVS 1473

Query: 74   EELCTQFKVKHSNSTPYRRKMNGAVEATNKNIKRIIEKMTVTY--KDWHEMLPL 126
            + L TQ  +       YR + +G VE  N+ IK  + K+ +    KDW  +LPL
Sbjct: 1474 QGLATQLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLALETGGKDWVTLLPL 1527

[Close]

BLAST of CmUC09G173010 vs. ExPASy TrEMBL
Match: A0A5A7VAF2 (RNA-directed DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00050 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 3.3e-58
Identity = 110/124 (88.71%), Postives = 117/124 (94.35%), Query Frame = 0


Query: 1   MDVIGPIEPRASNGHRFILVAIDYFIKWVEAPSYKSVTKQAVVKFIRKDIICRYGLPERI 60
           +DVIGPIEP+ASNGHRFILVAIDYF KWVEA SYKSVTKQAVVKFIRKDIICRYGLPERI
Sbjct: 123 LDVIGPIEPKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKFIRKDIICRYGLPERI 182

Query: 61  ITDNGRNLNNKLTEELCTQFKVKHSNSTPYRRKMNGAVEATNKNIKRIIEKMTVTYKDWH 120
           ITDNG+NLNNKL EELC QFKVKHSNSTPYR KMNGAVE  NKNIK+I+EKM+VTY+DWH
Sbjct: 183 ITDNGKNLNNKLMEELCNQFKVKHSNSTPYRPKMNGAVETANKNIKKILEKMSVTYRDWH 242

Query: 121 EMLP 125
           EMLP
Sbjct: 243 EMLP 246

[Close]

BLAST of CmUC09G173010 vs. ExPASy TrEMBL
Match: A0A5D3BSJ4 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold280G00650 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.3e-54
Identity = 105/124 (84.68%), Postives = 116/124 (93.55%), Query Frame = 0


Query: 1   MDVIGPIEPRASNGHRFILVAIDYFIKWVEAPSYKSVTKQAVVKFIRKDIICRYGLPERI 60
           +DVIGPIEP+ASNGHRFILVAIDYF KWVE+ SY   TKQAVVKFIRKDIIC+YGLPERI
Sbjct: 60  LDVIGPIEPKASNGHRFILVAIDYFTKWVESASY---TKQAVVKFIRKDIICQYGLPERI 119

Query: 61  ITDNGRNLNNKLTEELCTQFKVKHSNSTPYRRKMNGAVEATNKNIKRIIEKMTVTYKDWH 120
           ITDNG+NLNNKL EELC+QFKVKHSNSTPYR KMNGAVEA NKNIK+I+EKM++TY+DWH
Sbjct: 120 ITDNGKNLNNKLMEELCSQFKVKHSNSTPYRPKMNGAVEAANKNIKKILEKMSITYRDWH 179

Query: 121 EMLP 125
           EMLP
Sbjct: 180 EMLP 180

[Close]

BLAST of CmUC09G173010 vs. ExPASy TrEMBL
Match: A0A5A7U7X5 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001520 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.9e-54
Identity = 105/124 (84.68%), Postives = 115/124 (92.74%), Query Frame = 0


Query: 1    MDVIGPIEPRASNGHRFILVAIDYFIKWVEAPSYKSVTKQAVVKFIRKDIICRYGLPERI 60
            +DVIGPIEP+ASNGHRFILVAIDYF KWVEA SYKSVTKQAVVKFIRKDIICRY LPERI
Sbjct: 1002 LDVIGPIEPKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKFIRKDIICRYRLPERI 1061

Query: 61   ITDNGRNLNNKLTEELCTQFKVKHSNSTPYRRKMNGAVEATNKNIKRIIEKMTVTYKDWH 120
            I +NG+N+NNKL EELC+QFKVKHSNST YR KMN AVEA NKNIK+I+EKM+VTY+DWH
Sbjct: 1062 IINNGKNMNNKLMEELCSQFKVKHSNSTLYRPKMNEAVEAANKNIKKILEKMSVTYRDWH 1121

Query: 121  EMLP 125
            EMLP
Sbjct: 1122 EMLP 1125

[Close]

BLAST of CmUC09G173010 vs. ExPASy TrEMBL
Match: A0A6J1D7C7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111018303 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.9e-54
Identity = 103/124 (83.06%), Postives = 111/124 (89.52%), Query Frame = 0


Query: 1    MDVIGPIEPRASNGHRFILVAIDYFIKWVEAPSYKSVTKQAVVKFIRKDIICRYGLPERI 60
            MDVIGPIEP+ASNGHRFILVAIDYF KWVEA SY+ VTK  VVKFI+K+IICRYGLPE I
Sbjct: 1388 MDVIGPIEPKASNGHRFILVAIDYFTKWVEAASYRDVTKGVVVKFIKKEIICRYGLPETI 1447

Query: 61   ITDNGRNLNNKLTEELCTQFKVKHSNSTPYRRKMNGAVEATNKNIKRIIEKMTVTYKDWH 120
            I+DN RNLNNKL  ELC QFK+KH NSTPYR KMNGAVEA NKNIKRI+EKMTVTY+DWH
Sbjct: 1448 ISDNARNLNNKLMSELCEQFKIKHLNSTPYRPKMNGAVEAANKNIKRIVEKMTVTYRDWH 1507

Query: 121  EMLP 125
            EMLP
Sbjct: 1508 EMLP 1511

[Close]

BLAST of CmUC09G173010 vs. ExPASy TrEMBL
Match: A0A6J1CNY7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.2e-52
Identity = 101/124 (81.45%), Postives = 109/124 (87.90%), Query Frame = 0


Query: 1    MDVIGPIEPRASNGHRFILVAIDYFIKWVEAPSYKSVTKQAVVKFIRKDIICRYGLPERI 60
            MDVIGPIEP+ASNGHRFILVAIDYF  WVEA SY+ VTK  VVKFI+K+IICRYGLPE I
Sbjct: 1874 MDVIGPIEPKASNGHRFILVAIDYFTNWVEAASYRDVTKGVVVKFIKKEIICRYGLPETI 1933

Query: 61   ITDNGRNLNNKLTEELCTQFKVKHSNSTPYRRKMNGAVEATNKNIKRIIEKMTVTYKDWH 120
            I+DN RNLNNKL  ELC QFK+KH NSTPYR KMNGAVEA NKNIKRI+EKMTVTY+DWH
Sbjct: 1934 ISDNARNLNNKLXSELCEQFKIKHLNSTPYRPKMNGAVEAANKNIKRIVEKMTVTYRDWH 1993

Query: 121  EMLP 125
             MLP
Sbjct: 1994 GMLP 1997

The following BLAST results are available for this feature:

BLAST of CmUC09G173010 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065292.1	6.7e-58	88.71	RNA-directed DNA polymerase [Cucumis melo var. makuwa]	[more]
KAA0045604.1	2.6e-54	84.68	Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK02653.1 Retrotransp...	[more]
KAA0049671.1	5.9e-54	84.68	uncharacterized protein E6C27_scaffold76G00060 [Cucumis melo var. makuwa] >TYK12...	[more]
XP_022150030.1	1.0e-53	83.06	LOW QUALITY PROTEIN: uncharacterized protein LOC111018303 [Momordica charantia]	[more]
XP_022143495.1	2.5e-52	81.45	LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]	[more]

BLAST of CmUC09G173010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P03360	1.9e-15	39.13	Gag-Pol polyprotein (Fragment) OS=Avian reticuloendotheliosis virus OX=11636 GN=...	[more]
P03359	7.6e-12	35.96	Gag-Pol polyprotein OS=Woolly monkey sarcoma virus OX=11970 GN=pol PE=3 SV=2	[more]
Q9TTC1	1.3e-11	35.96	Gag-Pol polyprotein OS=Koala retrovirus OX=394239 GN=pro-pol PE=3 SV=2	[more]
P10273	2.2e-11	33.33	Gag-Pol polyprotein OS=Feline leukemia virus OX=11768 GN=pol PE=3 SV=2	[more]
P21414	2.9e-11	35.09	Gag-Pol polyprotein OS=Gibbon ape leukemia virus OX=11840 GN=pol PE=3 SV=2	[more]

BLAST of CmUC09G173010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VAF2	3.3e-58	88.71	RNA-directed DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3BSJ4	1.3e-54	84.68	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7U7X5	2.9e-54	84.68	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00152...	[more]
A0A6J1D7C7	4.9e-54	83.06	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111018303 PE=4 SV=1	[more]
A0A6J1CNY7	1.2e-52	81.45	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1	[more]

BLAST of CmUC09G173010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..133 e-value: 1.9E-35 score: 123.9
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 3..91 e-value: 4.3E-10 score: 39.8
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..136 score: 18.646187
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..126
None	No IPR available	PANTHER	PTHR24559:SF373	REVERSE TRANSCRIPTASE DOMAIN, RIBONUCLEASE H-LIKE DOMAIN PROTEIN-RELATED	coord: 2..126
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC09G173010.1	CmUC09G173010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity
molecular_function	GO:0003676	nucleic acid binding