CmUC09G171610 (gene) Watermelon (USVL531) v1

Overview
NameCmUC09G171610
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionAlpha-ketoglutarate-dependent dioxygenase alkB homolog 6
LocationCmU531Chr09: 11604053 .. 11604499 (-)
RNA-Seq ExpressionCmUC09G171610
SyntenyCmUC09G171610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAGCCCATCAGGGAAGGGAAAATCACTACCACCATCTAAAATGGCTCTCAAATCCTACAAAGATTCGATAGAACATGCGTTAATTATGAGATCCTATTCAAGCATGACTTTCAAAATGTTTAGGGAAGAAGCAAAAGCTTACAGTGTGGTTTTTGAAGTACCAATCGCCAGCCAGAACAGTGAATTCTCCAGCAGGAGTAGGAAAGGGGACAAGAATTATAGAGCGGCTTTGAATTTTGAAGCCACCGAAGCCACCGGCGGCCTTGTGGAAGGCCAAAGAGGGGAAGTAAAAGTAGCTACCGATCTAATCTTTCACTTGCAAGACATAAGTGAAATTCTATCCTGGTGGGATGGGGCAGTTTGTGCCATAAACACCATCCTGCCAAGAGTTTCTTCTTTGTTGAATCCCATTCCTACACAACAACATCAAGGTGGAAAATAG

mRNA sequence

ATGAGAAGCCCATCAGGGAAGGGAAAATCACTACCACCATCTAAAATGGCTCTCAAATCCTACAAAGATTCGATAGAACATGCGTTAATTATGAGATCCTATTCAAGCATGACTTTCAAAATGTTTAGGGAAGAAGCAAAAGCTTACAGTGTGGTTTTTGAAGTACCAATCGCCAGCCAGAACAGTGAATTCTCCAGCAGGAGTAGGAAAGGGGACAAGAATTATAGAGCGGCTTTGAATTTTGAAGCCACCGAAGCCACCGGCGGCCTTGTGGAAGGCCAAAGAGGGGAAGTAAAAGTAGCTACCGATCTAATCTTTCACTTGCAAGACATAAGTGAAATTCTATCCTGGTGGGATGGGGCAGTTTGTGCCATAAACACCATCCTGCCAAGAGTTTCTTCTTTGTTGAATCCCATTCCTACACAACAACATCAAGGTGGAAAATAG

Coding sequence (CDS)

ATGAGAAGCCCATCAGGGAAGGGAAAATCACTACCACCATCTAAAATGGCTCTCAAATCCTACAAAGATTCGATAGAACATGCGTTAATTATGAGATCCTATTCAAGCATGACTTTCAAAATGTTTAGGGAAGAAGCAAAAGCTTACAGTGTGGTTTTTGAAGTACCAATCGCCAGCCAGAACAGTGAATTCTCCAGCAGGAGTAGGAAAGGGGACAAGAATTATAGAGCGGCTTTGAATTTTGAAGCCACCGAAGCCACCGGCGGCCTTGTGGAAGGCCAAAGAGGGGAAGTAAAAGTAGCTACCGATCTAATCTTTCACTTGCAAGACATAAGTGAAATTCTATCCTGGTGGGATGGGGCAGTTTGTGCCATAAACACCATCCTGCCAAGAGTTTCTTCTTTGTTGAATCCCATTCCTACACAACAACATCAAGGTGGAAAATAG

Protein sequence

MRSPSGKGKSLPPSKMALKSYKDSIEHALIMRSYSSMTFKMFREEAKAYSVVFEVPIASQNSEFSSRSRKGDKNYRAALNFEATEATGGLVEGQRGEVKVATDLIFHLQDISEILSWWDGAVCAINTILPRVSSLLNPIPTQQHQGGK
Homology
BLAST of CmUC09G171610 vs. NCBI nr
Match: OAY79989.1 (hypothetical protein ACMD2_04951, partial [Ananas comosus])

HSP 1 Score: 75.5 bits (184), Expect = 4.4e-10
Identity = 41/100 (41.00%), Postives = 62/100 (62.00%), Query Frame = 0

Query: 44  EEAKAYSVVFEVPIASQNSEFSSRSRKGDKNYRAALNFEATEATGGLVEGQRGEVKVATD 103
           E A+   V   +P+A+++ E   R  +GD +  AA++ EA EA  GL+   RGEV+ A D
Sbjct: 356 EAARERLVGLGLPVANEDGEVVGRRGEGDGDEEAAVDPEAAEAPRGLLRADRGEVEEAAD 415

Query: 104 LIFHLQDISEILSWWDGAVCAINTILPRVSSLLNPIPTQQ 144
           L+ HL+ +SE+ +  DGAV   + +LPRV  LL+ IPT +
Sbjct: 416 LVLHLEVVSEVPAGRDGAVRPGHAVLPRVLPLLDAIPTHE 455

BLAST of CmUC09G171610 vs. NCBI nr
Match: KAB8096462.1 (hypothetical protein EE612_024912 [Oryza sativa] >BAS90483.1 Os04g0561950 [Oryza sativa Japonica Group])

HSP 1 Score: 68.6 bits (166), Expect = 5.3e-08
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 0

Query: 55  VPIASQNSEFSSRSRKGDKNYRAALNFEATEATGGLVEGQRGEVKVATDLIFHLQDISEI 114
           VP+A Q+   + R  +GD + RAA + +  +A GGLVEG+R EV+ A DL+  L  + E+
Sbjct: 65  VPVADQHGVLAGRRIEGDGDQRAAADADGAKAAGGLVEGERREVEEAADLVLGLHLVGEV 124

Query: 115 LSWWDGAVCAINTILPRVSSLLNP 139
           L+  D AV A + +LPRV  +L P
Sbjct: 125 LARRDRAVRAGHAVLPRVLPVLKP 148

BLAST of CmUC09G171610 vs. NCBI nr
Match: ACR35305.1 (unknown [Zea mays])

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-07
Identity = 39/102 (38.24%), Postives = 55/102 (53.92%), Query Frame = 0

Query: 44  EEAKAYSVVFEVPIASQNSEFSSRSRKGDKNYRAALNFEATEATGGLVEGQRGEVKVATD 103
           E      VV  VP+A ++     R R+ D + RAA + +A E  GGLVEGQR EV V  D
Sbjct: 379 EHVPQVGVVGLVPVADEDGVVGGRRRERDGDLRAAEHADAAEPAGGLVEGQRWEVVVGAD 438

Query: 104 LIFHLQDISEILSWWDGAVCAINTILPRVSSLLNPIPTQQHQ 146
           L+  L D+ E+ +  D A    + +L RV  LL P P ++ +
Sbjct: 439 LVLGLHDVGEVGARRDRARRPGHAVLERVPPLLEPAPGEEER 480

BLAST of CmUC09G171610 vs. NCBI nr
Match: KAB8104148.1 (hypothetical protein EE612_036843 [Oryza sativa] >BAS99835.1 Os07g0119475 [Oryza sativa Japonica Group])

HSP 1 Score: 61.6 bits (148), Expect = 6.5e-06
Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = 0

Query: 55  VPIASQNSEFSSRSRKGDKNYRAALNFEATEATGGLVEGQRGEVKVATDLIFHLQDISEI 114
           VP+A +  E +   R  D + RA ++ E  EA GG V G  GEV    DL+  L+ +  +
Sbjct: 271 VPVADEEREVAGGRRVRDGDGRALVDVERAEAAGGAVHGDGGEVDEGADLVLGLELVGVV 330

Query: 115 LSWWDGAVCAINTILPRVSSLLNPIPTQQHQ 146
            +  D AV A + +LPRV +LL+ IP Q+ +
Sbjct: 331 GARGDWAVGAQHAVLPRVLALLDAIPCQEER 361

BLAST of CmUC09G171610 vs. NCBI nr
Match: GER50709.1 (alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 [Striga asiatica])

HSP 1 Score: 58.9 bits (141), Expect = 4.2e-05
Identity = 37/99 (37.37%), Postives = 56/99 (56.57%), Query Frame = 0

Query: 51  VVFEVPIASQNSEFSSRSRKGDKNYRAALNFEATEATGGLVEGQRGEVKVATDLIFHL-Q 110
           V   VP+A  + E   R+ +GD +  AA++ E  +A G  +E   GEV+VA DL+ HL Q
Sbjct: 683 VALVVPVAEDDGELVGRAVEGDGDEVAAVDLEDADAAGRALEAGGGEVEVAADLVLHLCQ 742

Query: 111 DISEILS-----WWDGAVCAINTILPRVSSLLNPIPTQQ 144
           ++ + +S       DGA  A   +LPRV +LLN  P ++
Sbjct: 743 NVGKNISCVVGAGEDGAHGAGGAVLPRVLALLNAGPCEE 781

BLAST of CmUC09G171610 vs. ExPASy TrEMBL
Match: A0A199VSF6 (Uncharacterized protein (Fragment) OS=Ananas comosus OX=4615 GN=ACMD2_04951 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.1e-10
Identity = 41/100 (41.00%), Postives = 62/100 (62.00%), Query Frame = 0

Query: 44  EEAKAYSVVFEVPIASQNSEFSSRSRKGDKNYRAALNFEATEATGGLVEGQRGEVKVATD 103
           E A+   V   +P+A+++ E   R  +GD +  AA++ EA EA  GL+   RGEV+ A D
Sbjct: 356 EAARERLVGLGLPVANEDGEVVGRRGEGDGDEEAAVDPEAAEAPRGLLRADRGEVEEAAD 415

Query: 104 LIFHLQDISEILSWWDGAVCAINTILPRVSSLLNPIPTQQ 144
           L+ HL+ +SE+ +  DGAV   + +LPRV  LL+ IPT +
Sbjct: 416 LVLHLEVVSEVPAGRDGAVRPGHAVLPRVLPLLDAIPTHE 455

BLAST of CmUC09G171610 vs. ExPASy TrEMBL
Match: A0A0P0WDG5 (Os04g0561950 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0561950 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.6e-08
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 0

Query: 55  VPIASQNSEFSSRSRKGDKNYRAALNFEATEATGGLVEGQRGEVKVATDLIFHLQDISEI 114
           VP+A Q+   + R  +GD + RAA + +  +A GGLVEG+R EV+ A DL+  L  + E+
Sbjct: 65  VPVADQHGVLAGRRIEGDGDQRAAADADGAKAAGGLVEGERREVEEAADLVLGLHLVGEV 124

Query: 115 LSWWDGAVCAINTILPRVSSLLNP 139
           L+  D AV A + +LPRV  +L P
Sbjct: 125 LARRDRAVRAGHAVLPRVLPVLKP 148

BLAST of CmUC09G171610 vs. ExPASy TrEMBL
Match: C4J2A5 (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.7e-08
Identity = 39/102 (38.24%), Postives = 55/102 (53.92%), Query Frame = 0

Query: 44  EEAKAYSVVFEVPIASQNSEFSSRSRKGDKNYRAALNFEATEATGGLVEGQRGEVKVATD 103
           E      VV  VP+A ++     R R+ D + RAA + +A E  GGLVEGQR EV V  D
Sbjct: 379 EHVPQVGVVGLVPVADEDGVVGGRRRERDGDLRAAEHADAAEPAGGLVEGQRWEVVVGAD 438

Query: 104 LIFHLQDISEILSWWDGAVCAINTILPRVSSLLNPIPTQQHQ 146
           L+  L D+ E+ +  D A    + +L RV  LL P P ++ +
Sbjct: 439 LVLGLHDVGEVGARRDRARRPGHAVLERVPPLLEPAPGEEER 480

BLAST of CmUC09G171610 vs. ExPASy TrEMBL
Match: A0A0P0X277 (Os07g0119475 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0119475 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.1e-06
Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = 0

Query: 55  VPIASQNSEFSSRSRKGDKNYRAALNFEATEATGGLVEGQRGEVKVATDLIFHLQDISEI 114
           VP+A +  E +   R  D + RA ++ E  EA GG V G  GEV    DL+  L+ +  +
Sbjct: 271 VPVADEEREVAGGRRVRDGDGRALVDVERAEAAGGAVHGDGGEVDEGADLVLGLELVGVV 330

Query: 115 LSWWDGAVCAINTILPRVSSLLNPIPTQQHQ 146
            +  D AV A + +LPRV +LL+ IP Q+ +
Sbjct: 331 GARGDWAVGAQHAVLPRVLALLDAIPCQEER 361

BLAST of CmUC09G171610 vs. ExPASy TrEMBL
Match: A0A5A7R004 (Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 OS=Striga asiatica OX=4170 GN=STAS_28030 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.0e-05
Identity = 37/99 (37.37%), Postives = 56/99 (56.57%), Query Frame = 0

Query: 51  VVFEVPIASQNSEFSSRSRKGDKNYRAALNFEATEATGGLVEGQRGEVKVATDLIFHL-Q 110
           V   VP+A  + E   R+ +GD +  AA++ E  +A G  +E   GEV+VA DL+ HL Q
Sbjct: 683 VALVVPVAEDDGELVGRAVEGDGDEVAAVDLEDADAAGRALEAGGGEVEVAADLVLHLCQ 742

Query: 111 DISEILS-----WWDGAVCAINTILPRVSSLLNPIPTQQ 144
           ++ + +S       DGA  A   +LPRV +LLN  P ++
Sbjct: 743 NVGKNISCVVGAGEDGAHGAGGAVLPRVLALLNAGPCEE 781

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
OAY79989.14.4e-1041.00hypothetical protein ACMD2_04951, partial [Ananas comosus][more]
KAB8096462.15.3e-0842.86hypothetical protein EE612_024912 [Oryza sativa] >BAS90483.1 Os04g0561950 [Oryza... [more]
ACR35305.11.2e-0738.24unknown [Zea mays][more]
KAB8104148.16.5e-0637.36hypothetical protein EE612_036843 [Oryza sativa] >BAS99835.1 Os07g0119475 [Oryza... [more]
GER50709.14.2e-0537.37alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 [Striga asiatica][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A199VSF62.1e-1041.00Uncharacterized protein (Fragment) OS=Ananas comosus OX=4615 GN=ACMD2_04951 PE=4... [more]
A0A0P0WDG52.6e-0842.86Os04g0561950 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0561950 PE... [more]
C4J2A55.7e-0838.24Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1[more]
A0A0P0X2773.1e-0637.36Os07g0119475 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0119475 PE... [more]
A0A5A7R0042.0e-0537.37Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 OS=Striga asiatica OX=4... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC09G171610.1CmUC09G171610.1mRNA