CmUC09G169890 (gene) Watermelon (USVL531) v1

Overview
NameCmUC09G169890
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionATP synthase epsilon chain, chloroplastic
LocationCmU531Chr09: 9615089 .. 9615316 (-)
RNA-Seq ExpressionCmUC09G169890
SyntenyCmUC09G169890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTGATGGGTGGTTTTGCTAGAATAGGCAATAATGAGGTCACTATTTTAGTAAATGATGGGGAGAAGGCCAGTGACATTGATCCACAAGAAGCTCAACAAACTCTTGAAATAGCGGAAGCTAACTTGAGGAAAGCTCAGGGCAAGAGACAAGCAATCGAGGCAAATTTCGCTCTCAGGCAAGCTAGGACACGAGTAGAGGCTATCAATGGCGTACCTAGTTAA

mRNA sequence

ATGGCTCTGATGGGTGGTTTTGCTAGAATAGGCAATAATGAGGTCACTATTTTAGTAAATGATGGGGAGAAGGCCAGTGACATTGATCCACAAGAAGCTCAACAAACTCTTGAAATAGCGGAAGCTAACTTGAGGAAAGCTCAGGGCAAGAGACAAGCAATCGAGGCAAATTTCGCTCTCAGGCAAGCTAGGACACGAGTAGAGGCTATCAATGGCGTACCTAGTTAA

Coding sequence (CDS)

ATGGCTCTGATGGGTGGTTTTGCTAGAATAGGCAATAATGAGGTCACTATTTTAGTAAATGATGGGGAGAAGGCCAGTGACATTGATCCACAAGAAGCTCAACAAACTCTTGAAATAGCGGAAGCTAACTTGAGGAAAGCTCAGGGCAAGAGACAAGCAATCGAGGCAAATTTCGCTCTCAGGCAAGCTAGGACACGAGTAGAGGCTATCAATGGCGTACCTAGTTAA

Protein sequence

MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFALRQARTRVEAINGVPS
Homology
BLAST of CmUC09G169890 vs. NCBI nr
Match: YP_009752081.1 (CF1 subunit epsilon [Dendrosicyos socotranus] >YP_009753095.1 CF1 subunit epsilon [Corallocarpus boehmii] >QIT05491.1 CF1 subunit epsilon [Dendrosicyos socotranus] >QIT06167.1 CF1 subunit epsilon [Corallocarpus boehmii])

HSP 1 Score: 134.4 bits (337), Expect = 4.0e-28
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 0

Query: 1   MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFAL 60
           MALMGGFARIGNNEVTILVND EKASDIDPQEAQQTLEIAEANLRKAQGKRQ IEAN AL
Sbjct: 62  MALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLAL 121

Query: 61  RQARTRVEAINGVPS 76
           R+ARTRVEAINGVPS
Sbjct: 122 RRARTRVEAINGVPS 136

BLAST of CmUC09G169890 vs. NCBI nr
Match: ASY96329.1 (ATP synthase CF1 epsilon subunit [Cucumis melo subsp. agrestis])

HSP 1 Score: 134.4 bits (337), Expect = 4.0e-28
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 0

Query: 1   MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFAL 60
           MALMGGFARIGNNEVTILVND EKASDIDPQEAQQTLEIAEANLRKAQGKRQ IEAN AL
Sbjct: 62  MALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLAL 121

Query: 61  RQARTRVEAINGVPS 76
           R+ARTRVEAINGVPS
Sbjct: 122 RRARTRVEAINGVPS 136

BLAST of CmUC09G169890 vs. NCBI nr
Match: ALO22128.1 (AtpE [Cucurbita ficifolia] >QWV60846.1 ATP synthase CF1 epsilon subunit [Cucurbita ficifolia] >QZL38791.1 ATP synthase CF1 epsilon subunit [Cucurbita ficifolia])

HSP 1 Score: 134.4 bits (337), Expect = 4.0e-28
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 0

Query: 1   MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFAL 60
           MALMGGFARIGNNEVTILVND EKASDIDPQEAQQTLEIAEANLRKAQGKRQ IEAN AL
Sbjct: 64  MALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLAL 123

Query: 61  RQARTRVEAINGVPS 76
           R+ARTRVEAINGVPS
Sbjct: 124 RRARTRVEAINGVPS 138

BLAST of CmUC09G169890 vs. NCBI nr
Match: YP_004841789.1 (ATP synthase CF1 epsilon subunit [Cucumis melo subsp. melo] >YP_009004050.1 ATP synthase CF1 epsilon subunit [Cucumis hystrix] >YP_009317392.1 ATP synthase CF1 epsilon subunit [Coccinia grandis] >YP_009325995.1 ATP synthase CF1 epsilon subunit [Citrullus lanatus] >YP_009348037.1 ATP synthase CF1 epsilon subunit [Citrullus mucosospermus] >YP_009420800.1 ATP synthase CF1 epsilon subunit [Citrullus colocynthis] >YP_009431563.1 ATP synthase CF1 epsilon subunit [Citrullus amarus] >YP_009431648.1 ATP synthase CF1 epsilon subunit [Citrullus rehmii] >YP_009456152.1 ATP synthase CF1 epsilon subunit [Lagenaria siceraria] >YP_009860079.1 ATP synthase CF1 epsilon subunit [Cucumis melo subsp. agrestis] >YP_247605.1 ATP synthase CF1 epsilon subunit [Cucumis sativus] >Q4VZG9.1 RecName: Full=ATP synthase epsilon chain, chloroplastic; AltName: Full=ATP synthase F1 sector epsilon subunit; AltName: Full=F-ATPase epsilon subunit [Cucumis sativus] >ALF03307.1 ATP synthase CF1 epsilon subunit [Cucumis sativus var. hardwickii] >APW82467.1 ATP synthase CF1 epsilon subunit [Citrullus lanatus subsp. vulgaris] >ASY96590.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. conomon] >ASY96677.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. makuwa] >ASY96764.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. momordica] >ASY96851.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. dudaim] >ASY96938.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. cantalupo] >ASY97112.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. inodorus] >ASY97286.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. flexuosus] >AVE15337.1 AtpE [Cucumis sativus var. sativus] >QJF46389.1 ATP synthase CF1 epsilon subunit [Cucumis melo] >QNM38537.1 ATP synthase CF1 epsilon subunit [Lagenaria siceraria var. microcarpa] >QZL38599.1 CF1 subunit epsilon [Citrullus naudinianus] >QZL38687.1 CF1 subunit epsilon [Citrullus ecirrhosus])

HSP 1 Score: 134.4 bits (337), Expect = 4.0e-28
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 0

Query: 1   MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFAL 60
           MALMGGFARIGNNEVTILVND EKASDIDPQEAQQTLEIAEANLRKAQGKRQ IEAN AL
Sbjct: 62  MALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLAL 121

Query: 61  RQARTRVEAINGVPS 76
           R+ARTRVEAINGVPS
Sbjct: 122 RRARTRVEAINGVPS 136

BLAST of CmUC09G169890 vs. NCBI nr
Match: MBC9853674.1 (hypothetical protein [Adiantum capillus-veneris])

HSP 1 Score: 134.4 bits (337), Expect = 4.0e-28
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 0

Query: 1   MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFAL 60
           MALMGGFARIGNNEVTILVND EKASDIDPQEAQQTLEIAEANLRKAQGKRQ IEAN AL
Sbjct: 483 MALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLAL 542

Query: 61  RQARTRVEAINGVPS 76
           R+ARTRVEAINGVPS
Sbjct: 543 RRARTRVEAINGVPS 557

BLAST of CmUC09G169890 vs. ExPASy Swiss-Prot
Match: Q4VZG9 (ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus OX=3659 GN=atpE PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 5.2e-31
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 0

Query: 1   MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFAL 60
           MALMGGFARIGNNEVTILVND EKASDIDPQEAQQTLEIAEANLRKAQGKRQ IEAN AL
Sbjct: 62  MALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLAL 121

Query: 61  RQARTRVEAINGVPS 76
           R+ARTRVEAINGVPS
Sbjct: 122 RRARTRVEAINGVPS 136

BLAST of CmUC09G169890 vs. ExPASy Swiss-Prot
Match: Q49KZ2 (ATP synthase epsilon chain, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=atpE PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.1e-27
Identity = 62/73 (84.93%), Postives = 68/73 (93.15%), Query Frame = 0

Query: 1   MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFAL 60
           MALMGGFARIGNNE+TILVND EK SDIDPQEAQ+TLE+AEANLRKA+GKRQ IEAN AL
Sbjct: 60  MALMGGFARIGNNEITILVNDAEKGSDIDPQEAQETLELAEANLRKAEGKRQTIEANLAL 119

Query: 61  RQARTRVEAINGV 74
           R+ARTRVEAIN +
Sbjct: 120 RRARTRVEAINAI 132

BLAST of CmUC09G169890 vs. ExPASy Swiss-Prot
Match: A0ZZ41 (ATP synthase epsilon chain, chloroplastic OS=Gossypium barbadense OX=3634 GN=atpE PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.1e-27
Identity = 63/73 (86.30%), Postives = 67/73 (91.78%), Query Frame = 0

Query: 1   MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFAL 60
           MALMGGFARIGNNE+TILVND EK SDIDPQEAQQ LEIAEANLRKA+GKRQ IEAN AL
Sbjct: 60  MALMGGFARIGNNEITILVNDAEKGSDIDPQEAQQALEIAEANLRKAEGKRQTIEANLAL 119

Query: 61  RQARTRVEAINGV 74
           R+ARTRVEAIN +
Sbjct: 120 RRARTRVEAINAI 132

BLAST of CmUC09G169890 vs. ExPASy Swiss-Prot
Match: Q2L911 (ATP synthase epsilon chain, chloroplastic OS=Gossypium hirsutum OX=3635 GN=atpE PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.1e-27
Identity = 63/73 (86.30%), Postives = 67/73 (91.78%), Query Frame = 0

Query: 1   MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFAL 60
           MALMGGFARIGNNE+TILVND EK SDIDPQEAQQ LEIAEANLRKA+GKRQ IEAN AL
Sbjct: 60  MALMGGFARIGNNEITILVNDAEKGSDIDPQEAQQALEIAEANLRKAEGKRQTIEANLAL 119

Query: 61  RQARTRVEAINGV 74
           R+ARTRVEAIN +
Sbjct: 120 RRARTRVEAINAI 132

BLAST of CmUC09G169890 vs. ExPASy Swiss-Prot
Match: Q70XZ7 (ATP synthase epsilon chain, chloroplastic OS=Amborella trichopoda OX=13333 GN=atpE PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.7e-27
Identity = 63/75 (84.00%), Postives = 68/75 (90.67%), Query Frame = 0

Query: 1   MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFAL 60
           MALMGGFARIGNNE+TILVND EK SDIDPQEAQQTLEIAEANL +A+GKRQ IEAN AL
Sbjct: 60  MALMGGFARIGNNEITILVNDAEKGSDIDPQEAQQTLEIAEANLSRAEGKRQTIEANLAL 119

Query: 61  RQARTRVEAINGVPS 76
           R+ARTRVEAIN + S
Sbjct: 120 RRARTRVEAINAISS 134

BLAST of CmUC09G169890 vs. ExPASy TrEMBL
Match: A0A218KG49 (ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus var. hardwickii OX=319220 GN=atpE PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.9e-28
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 0

Query: 1   MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFAL 60
           MALMGGFARIGNNEVTILVND EKASDIDPQEAQQTLEIAEANLRKAQGKRQ IEAN AL
Sbjct: 62  MALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLAL 121

Query: 61  RQARTRVEAINGVPS 76
           R+ARTRVEAINGVPS
Sbjct: 122 RRARTRVEAINGVPS 136

BLAST of CmUC09G169890 vs. ExPASy TrEMBL
Match: G3ETZ1 (ATP synthase epsilon chain, chloroplastic OS=Cucumis melo subsp. melo OX=412675 GN=atpE PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.9e-28
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 0

Query: 1   MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFAL 60
           MALMGGFARIGNNEVTILVND EKASDIDPQEAQQTLEIAEANLRKAQGKRQ IEAN AL
Sbjct: 62  MALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLAL 121

Query: 61  RQARTRVEAINGVPS 76
           R+ARTRVEAINGVPS
Sbjct: 122 RRARTRVEAINGVPS 136

BLAST of CmUC09G169890 vs. ExPASy TrEMBL
Match: A0A1X9Q1L0 (ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus OX=3659 GN=atpE PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.9e-28
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 0

Query: 1   MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFAL 60
           MALMGGFARIGNNEVTILVND EKASDIDPQEAQQTLEIAEANLRKAQGKRQ IEAN AL
Sbjct: 62  MALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLAL 121

Query: 61  RQARTRVEAINGVPS 76
           R+ARTRVEAINGVPS
Sbjct: 122 RRARTRVEAINGVPS 136

BLAST of CmUC09G169890 vs. ExPASy TrEMBL
Match: A0A249RZA2 (ATP synthase epsilon chain, chloroplastic OS=Cucumis melo var. cantalupensis OX=3658 GN=atpE PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.9e-28
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 0

Query: 1   MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFAL 60
           MALMGGFARIGNNEVTILVND EKASDIDPQEAQQTLEIAEANLRKAQGKRQ IEAN AL
Sbjct: 62  MALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLAL 121

Query: 61  RQARTRVEAINGVPS 76
           R+ARTRVEAINGVPS
Sbjct: 122 RRARTRVEAINGVPS 136

BLAST of CmUC09G169890 vs. ExPASy TrEMBL
Match: A0A1S4EU14 (ATP synthase epsilon chain, chloroplastic OS=Cucumis melo OX=3656 GN=atpE PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.9e-28
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 0

Query: 1   MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFAL 60
           MALMGGFARIGNNEVTILVND EKASDIDPQEAQQTLEIAEANLRKAQGKRQ IEAN AL
Sbjct: 62  MALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLAL 121

Query: 61  RQARTRVEAINGVPS 76
           R+ARTRVEAINGVPS
Sbjct: 122 RRARTRVEAINGVPS 136

BLAST of CmUC09G169890 vs. TAIR 10
Match: ATCG00470.1 (ATP synthase epsilon chain )

HSP 1 Score: 122.1 bits (305), Expect = 1.9e-28
Identity = 63/73 (86.30%), Postives = 68/73 (93.15%), Query Frame = 0

Query: 1   MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFAL 60
           MALMGGFARIGNNE+TILVND EK SDIDPQEAQQTLEIAEANLRKA+GKRQ IEAN AL
Sbjct: 60  MALMGGFARIGNNEITILVNDAEKNSDIDPQEAQQTLEIAEANLRKAEGKRQTIEANLAL 119

Query: 61  RQARTRVEAINGV 74
           R+ARTRVEA+N +
Sbjct: 120 RRARTRVEALNTI 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
YP_009752081.14.0e-2894.67CF1 subunit epsilon [Dendrosicyos socotranus] >YP_009753095.1 CF1 subunit epsilo... [more]
ASY96329.14.0e-2894.67ATP synthase CF1 epsilon subunit [Cucumis melo subsp. agrestis][more]
ALO22128.14.0e-2894.67AtpE [Cucurbita ficifolia] >QWV60846.1 ATP synthase CF1 epsilon subunit [Cucurbi... [more]
YP_004841789.14.0e-2894.67ATP synthase CF1 epsilon subunit [Cucumis melo subsp. melo] >YP_009004050.1 ATP ... [more]
MBC9853674.14.0e-2894.67hypothetical protein [Adiantum capillus-veneris][more]
Match NameE-valueIdentityDescription
Q4VZG95.2e-3194.67ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus OX=3659 GN=atpE PE=... [more]
Q49KZ22.1e-2784.93ATP synthase epsilon chain, chloroplastic OS=Eucalyptus globulus subsp. globulus... [more]
A0ZZ412.1e-2786.30ATP synthase epsilon chain, chloroplastic OS=Gossypium barbadense OX=3634 GN=atp... [more]
Q2L9112.1e-2786.30ATP synthase epsilon chain, chloroplastic OS=Gossypium hirsutum OX=3635 GN=atpE ... [more]
Q70XZ72.7e-2784.00ATP synthase epsilon chain, chloroplastic OS=Amborella trichopoda OX=13333 GN=at... [more]
Match NameE-valueIdentityDescription
A0A218KG491.9e-2894.67ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus var. hardwickii OX=... [more]
G3ETZ11.9e-2894.67ATP synthase epsilon chain, chloroplastic OS=Cucumis melo subsp. melo OX=412675 ... [more]
A0A1X9Q1L01.9e-2894.67ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus OX=3659 GN=atpE PE=... [more]
A0A249RZA21.9e-2894.67ATP synthase epsilon chain, chloroplastic OS=Cucumis melo var. cantalupensis OX=... [more]
A0A1S4EU141.9e-2894.67ATP synthase epsilon chain, chloroplastic OS=Cucumis melo OX=3656 GN=atpE PE=3 S... [more]
Match NameE-valueIdentityDescription
ATCG00470.11.9e-2886.30ATP synthase epsilon chain [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 37..57
NoneNo IPR availableGENE3D6.10.140.480coord: 30..74
e-value: 3.1E-24
score: 86.3
NoneNo IPR availablePANTHERPTHR13822:SF10ATP SYNTHASE EPSILON CHAIN, CHLOROPLASTICcoord: 1..71
IPR020547ATP synthase delta/epsilon subunit, C-terminal domainPFAMPF00401ATP-synt_DEcoord: 27..70
e-value: 5.7E-6
score: 26.5
IPR001469ATP synthase, F1 complex, delta/epsilon subunitPANTHERPTHR13822ATP SYNTHASE DELTA/EPSILON CHAINcoord: 1..71

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC09G169890.1CmUC09G169890.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015986 ATP synthesis coupled proton transport
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function GO:0005524 ATP binding
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism