CmUC09G169350 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC09G169350
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	PsbP domain-containing protein
Location	CmU531Chr09: 8978784 .. 8981491 (+)
RNA-Seq Expression	CmUC09G169350
Synteny	CmUC09G169350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTTGGTTCTAGATATCCACTACTCTCACATCCACAAAAAAATTAAAAGAACCAAATCCCTTTTTCGGCATTTTGGACTCTCTTCCACCTTCATCCCCTTCCCTAACTCCAATTCGTCTCCAGAAATCATCGTTTCTGGTTTCGAATGGGAACCACATTGTTTAACCCTTTCTCCTCCCTCTTTCACCAACCACCTCACTCTTTTCTCCCAAAACGGGTTTTCGCCGTCCATGGCGCCCAACAGGAAAACCACAACTTCTCTACCATTCTTAATCGGAGATCGGTTTTGATGTCTGGTGTTTCTTTGCTTTCTTCTGCGGCTTTGGGGTTGCAGAGGGAGTGTTTGGCTGCGGTTAAGCAAGGCCTTCTTGCTGGGAGGATTCCTGGGTTGTCTGAACCCGATGAACAGGGTTGGCTTTTTCTTATACTCTATAACTCTTATGTCTAACTATCTATACTCTCATTTCCATTTCTAGTTTACATTTATGAATCTTCTGGTTGCTGCAATTTGTGGGTTATCAAACACTTTTATACACTCTACTGTTAAGTCTATCAACTATAATATCTACTAGTTTGGAACCATTTCTAGCCTTTAAATTTGGTTAATTTATAAGTATGATGTCTGAACTTTCATGTTTATATCTAATAGGCCTTTCAACTTTAGGGTTAATATAATGCAAGGACTAGAGTTAATATAACCTTTCCTTTATTGGGCTATAGCTGAATCTCTGCAGTAAGAAAACAAACAGGGCTGATCATGCCATCTTTTCTATGTCAACTTACACAGCCTTTCTGTCTTGCTAGTGCAGGAACCTCTTGTGCTAAACATACAAAAATGTTTAAGTTCTTGAATCAAAATATATCCAGCAAATTTCATTTTGACCATTGGATGCTTTGAAAATGCTTTCCCTTTTATCTTGAGCTTAGCATATCTGGTTTCTTGTTTGTTGCCTGCTCAGACAGGTTGGAGGACATATCGTAGACCTGACGAGAAGTCCGGTGGGCATGGAGTTGGATGGAGTCCTATTATTCCTTATGCCTTTTCAGTTCCTGAAGACTGGGAAGAGGTAAATTCTGCTTGACATTCCCTTTCTAAGTTTTAACATTGTTAAAGATACTGATGAAGAGCAGAGAAACTAATGAAACTTCATCAACCACTTAAATTAATAACATGGCTTGTTAGGCTGGTGCTTTGTGTGGTTTTTAGCCTCCATGTCGGAGGCTTAATTGGTGGCCATCTACCTAGAATTTTAAAATTCAGTGAGTTTCTTGACAGTTAAGCGTTGTAAGGTCAGTTGTTCTTTGCGATAAGTTAAAAGAAAACCTGCAATGTCTTTTGGAATTTGTGTTGGGATGCGTCCTTGATTAGAGGAGTAAAGTGAGGCCTATATATATAAACATAGTAAAGATCCAATAATAACTATTCCCAATTTATTTTTTTGTTTGGAATTGAAAATTCTAATACTAATTAGACAACTGCATGCAAGTTAATTTCATGTTCATCTTGATTATAGCAGACATGAGACAAGGTGCTTTTGTGTTGCAGGTTCCTGTGTCAATTGCTGATCTAGGTGGGACAGAGATTGATCTCAGATTCGGAAGCTCAAAGGAAGGTCGACTGTTTGTTATTGTTGCGCCTGTTCGTCGATTTTCTGATGGTGCATTTCCCTGAAAATTTTATGCTTCTTGTTTAGCTTTCCATTTCGAAGAAACTATGCTCCCACTCACTCTTCTGAGTTCCGACTTTTTCATTGTCCTGTGAAGTTATTGGCGAGGATGCAACCATTGAAATGGTTGGCCCTCCAGAGAAAGTAATCAACGCATTTGGACCCGAAGTGATTGGAGAAAATGTAGAAGGAAAGGTGATCAGCATGAGCGTGGCGGAGCATTCTGGAAGAACATATTATCAGTTTGAATTGGAGCCTCCTCATGTTATAATCACAGCGACAGCAGCAGGAAATCGTCTCTACCTATTCAATGTAACCGCAAATGGTAAGAGCCTACCAAGAACACCTTGCTGATATGATATGGGTTAAAATCATAAAAGAAATCAATTGTTTGGCATTAGAACTGAAGGAAGCTTTTTTCTTGGGTTATTATAGGTCTTCAATGGAAGAGACATTACGGCGACTTGAAAAGGATAGCGGATTCCTTTCGCGTTGTGTGATGAAGTTGTTTTGAAACTAGTTGCAGTATACGTATTCAGTATGGTTTAAAGAACAACAGTTGGTCAAAGCCTTGTGATGGTTCCTCTGTGACGTTAAAGCCTTGAGGTTTTTGTTTGATTAGTTGCCTTTGCATTATCATATGTTAATACTTATACTTGGATGGCAAAGACATGGTTCTGATATACTGAGTTGTAGTTGTATGGACATGAGAGAATTAAATATCATCATGTAAAGTAATTGAAATTGAAGGGTTGATGAAACTTTCCAATTTTCAGGTCAATGATATACAACACAATGTTAGAGAGTTGTAATACTAACGTCTAAAACACATAAACCCACATAGCAAGCAAAGTTTTAAGCATTCGGATTTTTTTTTGGTTCTATATTAGACACCAATTACTATTTAATTTATTTTTGGTTATTGCAAATTTCATCTTTATGGTGTGAAGAAAGTTAGAATTTAGTTTCTATAGTTTTAAAAGTCAGAATTTGGTCATATAGTTCGATAAAATCTCATAAATAGTCCTTATGTTTAAT

mRNA sequence

TTTTTTTGGTTCTAGATATCCACTACTCTCACATCCACAAAAAAATTAAAAGAACCAAATCCCTTTTTCGGCATTTTGGACTCTCTTCCACCTTCATCCCCTTCCCTAACTCCAATTCGTCTCCAGAAATCATCGTTTCTGGTTTCGAATGGGAACCACATTGTTTAACCCTTTCTCCTCCCTCTTTCACCAACCACCTCACTCTTTTCTCCCAAAACGGGTTTTCGCCGTCCATGGCGCCCAACAGGAAAACCACAACTTCTCTACCATTCTTAATCGGAGATCGGTTTTGATGTCTGGTGTTTCTTTGCTTTCTTCTGCGGCTTTGGGGTTGCAGAGGGAGTGTTTGGCTGCGGTTAAGCAAGGCCTTCTTGCTGGGAGGATTCCTGGGTTGTCTGAACCCGATGAACAGGGTTGGAGGACATATCGTAGACCTGACGAGAAGTCCGGTGGGCATGGAGTTGGATGGAGTCCTATTATTCCTTATGCCTTTTCAGTTCCTGAAGACTGGGAAGAGGTTCCTGTGTCAATTGCTGATCTAGGTGGGACAGAGATTGATCTCAGATTCGGAAGCTCAAAGGAAGGTCGACTGTTTGTTATTGTTGCGCCTGTTCGTCGATTTTCTGATGTTATTGGCGAGGATGCAACCATTGAAATGGTTGGCCCTCCAGAGAAAGTAATCAACGCATTTGGACCCGAAGTGATTGGAGAAAATGTAGAAGGAAAGGTGATCAGCATGAGCGTGGCGGAGCATTCTGGAAGAACATATTATCAGTTTGAATTGGAGCCTCCTCATGTTATAATCACAGCGACAGCAGCAGGAAATCGTCTCTACCTATTCAATGTAACCGCAAATGGTCTTCAATGGAAGAGACATTACGGCGACTTGAAAAGGATAGCGGATTCCTTTCGCGTTGTGTGATGAAGTTGTTTTGAAACTAGTTGCAGTATACGTATTCAGTATGGTTTAAAGAACAACAGTTGGTCAAAGCCTTGTGATGGTTCCTCTGTGACGTTAAAGCCTTGAGGTTTTTGTTTGATTAGTTGCCTTTGCATTATCATATGTTAATACTTATACTTGGATGGCAAAGACATGGTTCTGATATACTGAGTTGTAGTTGTATGGACATGAGAGAATTAAATATCATCATGTAAAGTAATTGAAATTGAAGGGTTGATGAAACTTTCCAATTTTCAGGTCAATGATATACAACACAATGTTAGAGAGTTGTAATACTAACGTCTAAAACACATAAACCCACATAGCAAGCAAAGTTTTAAGCATTCGGATTTTTTTTTGGTTCTATATTAGACACCAATTACTATTTAATTTATTTTTGGTTATTGCAAATTTCATCTTTATGGTGTGAAGAAAGTTAGAATTTAGTTTCTATAGTTTTAAAAGTCAGAATTTGGTCATATAGTTCGATAAAATCTCATAAATAGTCCTTATGTTTAAT

Coding sequence (CDS)

ATGGGAACCACATTGTTTAACCCTTTCTCCTCCCTCTTTCACCAACCACCTCACTCTTTTCTCCCAAAACGGGTTTTCGCCGTCCATGGCGCCCAACAGGAAAACCACAACTTCTCTACCATTCTTAATCGGAGATCGGTTTTGATGTCTGGTGTTTCTTTGCTTTCTTCTGCGGCTTTGGGGTTGCAGAGGGAGTGTTTGGCTGCGGTTAAGCAAGGCCTTCTTGCTGGGAGGATTCCTGGGTTGTCTGAACCCGATGAACAGGGTTGGAGGACATATCGTAGACCTGACGAGAAGTCCGGTGGGCATGGAGTTGGATGGAGTCCTATTATTCCTTATGCCTTTTCAGTTCCTGAAGACTGGGAAGAGGTTCCTGTGTCAATTGCTGATCTAGGTGGGACAGAGATTGATCTCAGATTCGGAAGCTCAAAGGAAGGTCGACTGTTTGTTATTGTTGCGCCTGTTCGTCGATTTTCTGATGTTATTGGCGAGGATGCAACCATTGAAATGGTTGGCCCTCCAGAGAAAGTAATCAACGCATTTGGACCCGAAGTGATTGGAGAAAATGTAGAAGGAAAGGTGATCAGCATGAGCGTGGCGGAGCATTCTGGAAGAACATATTATCAGTTTGAATTGGAGCCTCCTCATGTTATAATCACAGCGACAGCAGCAGGAAATCGTCTCTACCTATTCAATGTAACCGCAAATGGTCTTCAATGGAAGAGACATTACGGCGACTTGAAAAGGATAGCGGATTCCTTTCGCGTTGTGTGA

Protein sequence

MGTTLFNPFSSLFHQPPHSFLPKRVFAVHGAQQENHNFSTILNRRSVLMSGVSLLSSAALGLQRECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPEDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEMVGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYLFNVTANGLQWKRHYGDLKRIADSFRVV

Homology

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BLAST of CmUC09G169350 vs. NCBI nr
Match: XP_004139653.1 (psbP domain-containing protein 4, chloroplastic isoform X1 [Cucumis sativus] >KGN44513.1 hypothetical protein Csa_015810 [Cucumis sativus])

HSP 1 Score: 470.3 bits (1209), Expect = 1.1e-128
Identity = 235/267 (88.01%), Postives = 243/267 (91.01%), Query Frame = 0


Query: 1   MGTTLF--NPFSSLFHQ--------PPHSFLPKRVFAVHGAQQENHNFSTILNRRSVLMS 60
           MGTTLF  NPFSS+FH         PPH FLPKRV AVHGA  +N   ST LNRR  L+S
Sbjct: 1   MGTTLFITNPFSSIFHHQYLPSPHLPPHHFLPKRVSAVHGAHNQNPISSTALNRRWALVS 60

Query: 61  GVSLLSSAALGLQRECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120
           GVSLLSSAALGLQ +CLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI
Sbjct: 61  GVSLLSSAALGLQNDCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120

Query: 121 IPYAFSVPEDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEM 180
           IPYAFSVP+DWEEVPVSIADLGGTEIDLRFGS KEGR+FV+VAPVRRFSDVIGEDATIEM
Sbjct: 121 IPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRVFVVVAPVRRFSDVIGEDATIEM 180

Query: 181 VGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYL 240
           VGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYL
Sbjct: 181 VGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYL 240

Query: 241 FNVTANGLQWKRHYGDLKRIADSFRVV 258
           FNVTANGLQWKRHY DLKRIADSFR+V
Sbjct: 241 FNVTANGLQWKRHYNDLKRIADSFRIV 267

[Close]

BLAST of CmUC09G169350 vs. NCBI nr
Match: XP_038896887.1 (psbP domain-containing protein 4, chloroplastic [Benincasa hispida])

HSP 1 Score: 470.3 bits (1209), Expect = 1.1e-128
Identity = 238/267 (89.14%), Postives = 244/267 (91.39%), Query Frame = 0


Query: 1   MGTTLF--NPFSSLFHQP--------PHSFLPKRVFAVHGAQQENHNFSTILNRRSVLMS 60
           MGTTLF  NPF S  HQP        P+SFLPK V AVHG QQEN N S  LNRR VL+S
Sbjct: 1   MGTTLFTINPFFSFCHQPNLPSPLLHPNSFLPKPVSAVHGGQQENPNLSPTLNRRWVLVS 60

Query: 61  GVSLLSSAALGLQRECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120
           GVSLLSSAALGL ++CLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI
Sbjct: 61  GVSLLSSAALGLPKDCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120

Query: 121 IPYAFSVPEDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEM 180
           IPYAFSVP+DWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEM
Sbjct: 121 IPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEM 180

Query: 181 VGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYL 240
           VGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYL
Sbjct: 181 VGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYL 240

Query: 241 FNVTANGLQWKRHYGDLKRIADSFRVV 258
           F+VTANGLQWKRHY DLKRIADSFRVV
Sbjct: 241 FSVTANGLQWKRHYSDLKRIADSFRVV 267

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BLAST of CmUC09G169350 vs. NCBI nr
Match: KAA0037784.1 (psbP domain-containing protein 4 [Cucumis melo var. makuwa] >TYK27307.1 psbP domain-containing protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 456.4 bits (1173), Expect = 1.6e-124
Identity = 233/268 (86.94%), Postives = 240/268 (89.55%), Query Frame = 0


Query: 1   MGTT---LFNPFSSLFHQP--------PHSFLPKRVFAVHGAQQENHNFSTILNRRSVLM 60
           MGTT   + NPFSS+FHQ         PH FLPKRV A+H A  +N   S  L RR VL+
Sbjct: 1   MGTTALFITNPFSSIFHQQNLPSPLLHPHRFLPKRVSALHRAHNQNPISSPALIRRWVLV 60

Query: 61  SGVSLLSSAALGLQRECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSP 120
           SGVSLLSSAALGLQ ECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSP
Sbjct: 61  SGVSLLSSAALGLQNECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSP 120

Query: 121 IIPYAFSVPEDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIE 180
           IIPYAFSVP+DWEEVPVSIADLGGTEIDLRFGS KEGRLFVIVAPVRRFSDVIGEDATIE
Sbjct: 121 IIPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRLFVIVAPVRRFSDVIGEDATIE 180

Query: 181 MVGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLY 240
           MVGPPEKVINAFGPEVIGENVEGKVISMSVAE+SGRTYYQFELEPPHVIITATAAGNRLY
Sbjct: 181 MVGPPEKVINAFGPEVIGENVEGKVISMSVAEYSGRTYYQFELEPPHVIITATAAGNRLY 240

Query: 241 LFNVTANGLQWKRHYGDLKRIADSFRVV 258
           LFNVTANGLQWKRHY DLKRIADSFRVV
Sbjct: 241 LFNVTANGLQWKRHYKDLKRIADSFRVV 268

[Close]

BLAST of CmUC09G169350 vs. NCBI nr
Match: XP_008461486.1 (PREDICTED: psbP domain-containing protein 4, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 456.1 bits (1172), Expect = 2.1e-124
Identity = 233/268 (86.94%), Postives = 240/268 (89.55%), Query Frame = 0


Query: 1   MGTT---LFNPFSSLFHQP--------PHSFLPKRVFAVHGAQQENHNFSTILNRRSVLM 60
           MGTT   + NPFSS+FHQ         PH FLPKRV A+H A  +N   S  L RR VL+
Sbjct: 1   MGTTALFITNPFSSIFHQQNLPSPLLHPHRFLPKRVSALHCAHNQNPISSPALIRRWVLV 60

Query: 61  SGVSLLSSAALGLQRECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSP 120
           SGVSLLSSAALGLQ ECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSP
Sbjct: 61  SGVSLLSSAALGLQNECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSP 120

Query: 121 IIPYAFSVPEDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIE 180
           IIPYAFSVP+DWEEVPVSIADLGGTEIDLRFGS KEGRLFVIVAPVRRFSDVIGEDATIE
Sbjct: 121 IIPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRLFVIVAPVRRFSDVIGEDATIE 180

Query: 181 MVGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLY 240
           MVGPPEKVINAFGPEVIGENVEGKVISMSVAE+SGRTYYQFELEPPHVIITATAAGNRLY
Sbjct: 181 MVGPPEKVINAFGPEVIGENVEGKVISMSVAEYSGRTYYQFELEPPHVIITATAAGNRLY 240

Query: 241 LFNVTANGLQWKRHYGDLKRIADSFRVV 258
           LFNVTANGLQWKRHY DLKRIADSFRVV
Sbjct: 241 LFNVTANGLQWKRHYKDLKRIADSFRVV 268

[Close]

BLAST of CmUC09G169350 vs. NCBI nr
Match: XP_022975015.1 (psbP domain-containing protein 4, chloroplastic [Cucurbita maxima])

HSP 1 Score: 436.4 bits (1121), Expect = 1.7e-118
Identity = 222/261 (85.06%), Postives = 235/261 (90.04%), Query Frame = 0


Query: 1   MGTTLFN--PFSSLFHQ--PPHSFLPKRVFAVHGAQQENHNFSTILNRRSVLMSGVSLLS 60
           MG+T+F   PFS  FHQ  PP   L K V AV G   E  N S ILNRRSVL+SGVSL+S
Sbjct: 1   MGSTMFATVPFSCNFHQSKPPSQILQKGVPAVGG---EKENRSPILNRRSVLLSGVSLVS 60

Query: 61  SAALGLQRECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFS 120
           SA LGLQ ECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFS
Sbjct: 61  SAGLGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFS 120

Query: 121 VPEDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEMVGPPEK 180
           VP+DWEEVPVSIADLGGTEIDLRF SSKEGRLFVIVAPV+RFSDVIG+DATIEMVGPPEK
Sbjct: 121 VPQDWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGPPEK 180

Query: 181 VINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYLFNVTAN 240
           VI+AFGPEVIGENVEGKV++MSVAEH+GRTYYQFELEPPHV+ITATAAGNRLYLF+VT N
Sbjct: 181 VISAFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYLFSVTGN 240

Query: 241 GLQWKRHYGDLKRIADSFRVV 258
           GLQWKRHY DLKRIADSFRVV
Sbjct: 241 GLQWKRHYSDLKRIADSFRVV 258

[Close]

BLAST of CmUC09G169350 vs. ExPASy Swiss-Prot
Match: O49292 (PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD4 PE=1 SV=2)

HSP 1 Score: 358.6 bits (919), Expect = 5.9e-98
Identity = 179/244 (73.36%), Postives = 201/244 (82.38%), Query Frame = 0


Query: 14  HQPPHSFLPKRVFAVHGAQQENHNFSTILNRRSVLMSGVSLLSSAALGLQRECLAAVKQG 73
           HQ  +S +PK          E+   + +L+RRSV+ SG+ + S+ AL   RE LA VKQG
Sbjct: 22  HQRSNSEIPK----TSPGGCEDEWCARVLSRRSVMASGL-VSSTTALAFPREGLAVVKQG 81

Query: 74  LLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPEDWEEVPVSIADLGG 133
           LLAGR+PGLSEPDE+GWRTYRRPDEKSGGHGVGWSPIIPYAFSVP+DW EVPVSIADLGG
Sbjct: 82  LLAGRVPGLSEPDEEGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQDWNEVPVSIADLGG 141

Query: 134 TEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEMVGPPEKVINAFGPEVIGENVEGK 193
           TEIDLRF S KEGRL VIVAPV RF+D +G+D  IE +G P KVINAFGPEVIGENVEGK
Sbjct: 142 TEIDLRFASPKEGRLSVIVAPVLRFADNLGDDVKIENIGQPAKVINAFGPEVIGENVEGK 201

Query: 194 VISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYLFNVTANGLQWKRHYGDLKRIADS 253
           V+S +VAEH GR YYQFELEPPHV+ITATAAGNRLYLF+VT NGLQWKRHY DLKRIA S
Sbjct: 202 VLSSNVAEHDGRLYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYKDLKRIASS 260

Query: 254 FRVV 258
           FR+V
Sbjct: 262 FRIV 260

[Close]

BLAST of CmUC09G169350 vs. ExPASy Swiss-Prot
Match: Q9LXX5 (PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD6 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.9e-16
Identity = 72/275 (26.18%), Postives = 125/275 (45.45%), Query Frame = 0


Query: 1   MGTTLFNPFSSLFHQPPHSFLP----KRVFAVHGAQQENHNFSTILNRRSVLMSGVSLLS 60
           M T    P S +F   P S        RV      QQ+      +L + +V +  +  L 
Sbjct: 1   MATASLVPTSKIFSVSPKSSASIKARSRVVVASSQQQQQPRRRELLLKSAVAIPAILQLK 60

Query: 61  SAALGLQRECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFS 120
            A +   RE        +  G    LS  D        +P +      +    + PY F 
Sbjct: 61  EAPISAARE--------VEVGSYLPLSPSDPSFVLFKAKPSDTP---ALRAGNVQPYQFV 120

Query: 121 VPEDWEEVPVSIADLGG--------TEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATI 180
           +P +W+++ ++    G           I+++F + K+G++ V+ +P+ R ++    +ATI
Sbjct: 121 LPPNWKQLRIANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVASPLIRLTN--KPNATI 180

Query: 181 EMVGPPEKVINAFGPEVIGENVEG-KVISMSVAEHSGRTYYQFELEPP------HVIITA 240
           E +G PEKVI + GP V G + +  +++  S+ +   +TYY++ LE P      H +  A
Sbjct: 181 EDLGEPEKVIASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYVLETPFALTGSHNLAKA 240

Query: 241 TAAGNRLYLFNVTANGLQWKRHYGDLKRIADSFRV 257
           TA G+ + LF V+A   QW+     L+ I DSF++
Sbjct: 241 TAKGSTVVLFVVSATEKQWQSSQKTLEAILDSFQL 262

[Close]

BLAST of CmUC09G169350 vs. ExPASy TrEMBL
Match: A0A0A0K501 (PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G322590 PE=4 SV=1)

HSP 1 Score: 470.3 bits (1209), Expect = 5.1e-129
Identity = 235/267 (88.01%), Postives = 243/267 (91.01%), Query Frame = 0


Query: 1   MGTTLF--NPFSSLFHQ--------PPHSFLPKRVFAVHGAQQENHNFSTILNRRSVLMS 60
           MGTTLF  NPFSS+FH         PPH FLPKRV AVHGA  +N   ST LNRR  L+S
Sbjct: 1   MGTTLFITNPFSSIFHHQYLPSPHLPPHHFLPKRVSAVHGAHNQNPISSTALNRRWALVS 60

Query: 61  GVSLLSSAALGLQRECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120
           GVSLLSSAALGLQ +CLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI
Sbjct: 61  GVSLLSSAALGLQNDCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120

Query: 121 IPYAFSVPEDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEM 180
           IPYAFSVP+DWEEVPVSIADLGGTEIDLRFGS KEGR+FV+VAPVRRFSDVIGEDATIEM
Sbjct: 121 IPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRVFVVVAPVRRFSDVIGEDATIEM 180

Query: 181 VGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYL 240
           VGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYL
Sbjct: 181 VGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYL 240

Query: 241 FNVTANGLQWKRHYGDLKRIADSFRVV 258
           FNVTANGLQWKRHY DLKRIADSFR+V
Sbjct: 241 FNVTANGLQWKRHYNDLKRIADSFRIV 267

[Close]

BLAST of CmUC09G169350 vs. ExPASy TrEMBL
Match: A0A5A7T2U1 (PsbP domain-containing protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1784G00200 PE=4 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 7.6e-125
Identity = 233/268 (86.94%), Postives = 240/268 (89.55%), Query Frame = 0


Query: 1   MGTT---LFNPFSSLFHQP--------PHSFLPKRVFAVHGAQQENHNFSTILNRRSVLM 60
           MGTT   + NPFSS+FHQ         PH FLPKRV A+H A  +N   S  L RR VL+
Sbjct: 1   MGTTALFITNPFSSIFHQQNLPSPLLHPHRFLPKRVSALHRAHNQNPISSPALIRRWVLV 60

Query: 61  SGVSLLSSAALGLQRECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSP 120
           SGVSLLSSAALGLQ ECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSP
Sbjct: 61  SGVSLLSSAALGLQNECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSP 120

Query: 121 IIPYAFSVPEDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIE 180
           IIPYAFSVP+DWEEVPVSIADLGGTEIDLRFGS KEGRLFVIVAPVRRFSDVIGEDATIE
Sbjct: 121 IIPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRLFVIVAPVRRFSDVIGEDATIE 180

Query: 181 MVGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLY 240
           MVGPPEKVINAFGPEVIGENVEGKVISMSVAE+SGRTYYQFELEPPHVIITATAAGNRLY
Sbjct: 181 MVGPPEKVINAFGPEVIGENVEGKVISMSVAEYSGRTYYQFELEPPHVIITATAAGNRLY 240

Query: 241 LFNVTANGLQWKRHYGDLKRIADSFRVV 258
           LFNVTANGLQWKRHY DLKRIADSFRVV
Sbjct: 241 LFNVTANGLQWKRHYKDLKRIADSFRVV 268

[Close]

BLAST of CmUC09G169350 vs. ExPASy TrEMBL
Match: A0A1S3CEV2 (psbP domain-containing protein 4, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500071 PE=4 SV=1)

HSP 1 Score: 456.1 bits (1172), Expect = 1.0e-124
Identity = 233/268 (86.94%), Postives = 240/268 (89.55%), Query Frame = 0


Query: 1   MGTT---LFNPFSSLFHQP--------PHSFLPKRVFAVHGAQQENHNFSTILNRRSVLM 60
           MGTT   + NPFSS+FHQ         PH FLPKRV A+H A  +N   S  L RR VL+
Sbjct: 1   MGTTALFITNPFSSIFHQQNLPSPLLHPHRFLPKRVSALHCAHNQNPISSPALIRRWVLV 60

Query: 61  SGVSLLSSAALGLQRECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSP 120
           SGVSLLSSAALGLQ ECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSP
Sbjct: 61  SGVSLLSSAALGLQNECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSP 120

Query: 121 IIPYAFSVPEDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIE 180
           IIPYAFSVP+DWEEVPVSIADLGGTEIDLRFGS KEGRLFVIVAPVRRFSDVIGEDATIE
Sbjct: 121 IIPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRLFVIVAPVRRFSDVIGEDATIE 180

Query: 181 MVGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLY 240
           MVGPPEKVINAFGPEVIGENVEGKVISMSVAE+SGRTYYQFELEPPHVIITATAAGNRLY
Sbjct: 181 MVGPPEKVINAFGPEVIGENVEGKVISMSVAEYSGRTYYQFELEPPHVIITATAAGNRLY 240

Query: 241 LFNVTANGLQWKRHYGDLKRIADSFRVV 258
           LFNVTANGLQWKRHY DLKRIADSFRVV
Sbjct: 241 LFNVTANGLQWKRHYKDLKRIADSFRVV 268

[Close]

BLAST of CmUC09G169350 vs. ExPASy TrEMBL
Match: A0A6J1IFH3 (psbP domain-containing protein 4, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111473925 PE=4 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 8.2e-119
Identity = 222/261 (85.06%), Postives = 235/261 (90.04%), Query Frame = 0


Query: 1   MGTTLFN--PFSSLFHQ--PPHSFLPKRVFAVHGAQQENHNFSTILNRRSVLMSGVSLLS 60
           MG+T+F   PFS  FHQ  PP   L K V AV G   E  N S ILNRRSVL+SGVSL+S
Sbjct: 1   MGSTMFATVPFSCNFHQSKPPSQILQKGVPAVGG---EKENRSPILNRRSVLLSGVSLVS 60

Query: 61  SAALGLQRECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFS 120
           SA LGLQ ECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFS
Sbjct: 61  SAGLGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFS 120

Query: 121 VPEDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEMVGPPEK 180
           VP+DWEEVPVSIADLGGTEIDLRF SSKEGRLFVIVAPV+RFSDVIG+DATIEMVGPPEK
Sbjct: 121 VPQDWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGPPEK 180

Query: 181 VINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYLFNVTAN 240
           VI+AFGPEVIGENVEGKV++MSVAEH+GRTYYQFELEPPHV+ITATAAGNRLYLF+VT N
Sbjct: 181 VISAFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYLFSVTGN 240

Query: 241 GLQWKRHYGDLKRIADSFRVV 258
           GLQWKRHY DLKRIADSFRVV
Sbjct: 241 GLQWKRHYSDLKRIADSFRVV 258

[Close]

BLAST of CmUC09G169350 vs. ExPASy TrEMBL
Match: A0A6J1FDH1 (psbP domain-containing protein 4, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111443110 PE=4 SV=1)

HSP 1 Score: 434.1 bits (1115), Expect = 4.1e-118
Identity = 221/261 (84.67%), Postives = 235/261 (90.04%), Query Frame = 0


Query: 1   MGTTLFN--PFSSLFHQ--PPHSFLPKRVFAVHGAQQENHNFSTILNRRSVLMSGVSLLS 60
           MG+T+F   PFS  FHQ  PP   L K V AV G   E  N S ILNRRSVL+SGVSL+S
Sbjct: 1   MGSTMFASVPFSCNFHQSKPPSHILQKGVPAVGG---EKDNRSPILNRRSVLLSGVSLVS 60

Query: 61  SAALGLQRECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFS 120
           SA LGLQ ECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFS
Sbjct: 61  SAGLGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFS 120

Query: 121 VPEDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEMVGPPEK 180
           VP+DWEEVPVSIADLGGTEIDLRF SSKEGRLFVIVAPV+RFSDVIG+DATIEMVGPPEK
Sbjct: 121 VPQDWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGPPEK 180

Query: 181 VINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYLFNVTAN 240
           VI+AFGPEVIGENVEGKV++MSVAEH+GRTYYQFELEPPHV+ITATAAGNRLYLF+VT N
Sbjct: 181 VISAFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYLFSVTGN 240

Query: 241 GLQWKRHYGDLKRIADSFRVV 258
           GLQWKRH+ DLKRIADSFRVV
Sbjct: 241 GLQWKRHFSDLKRIADSFRVV 258

[Close]

BLAST of CmUC09G169350 vs. TAIR 10
Match: AT1G77090.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein )

HSP 1 Score: 358.6 bits (919), Expect = 4.2e-99
Identity = 179/244 (73.36%), Postives = 201/244 (82.38%), Query Frame = 0


Query: 14  HQPPHSFLPKRVFAVHGAQQENHNFSTILNRRSVLMSGVSLLSSAALGLQRECLAAVKQG 73
           HQ  +S +PK          E+   + +L+RRSV+ SG+ + S+ AL   RE LA VKQG
Sbjct: 22  HQRSNSEIPK----TSPGGCEDEWCARVLSRRSVMASGL-VSSTTALAFPREGLAVVKQG 81

Query: 74  LLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPEDWEEVPVSIADLGG 133
           LLAGR+PGLSEPDE+GWRTYRRPDEKSGGHGVGWSPIIPYAFSVP+DW EVPVSIADLGG
Sbjct: 82  LLAGRVPGLSEPDEEGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQDWNEVPVSIADLGG 141

Query: 134 TEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEMVGPPEKVINAFGPEVIGENVEGK 193
           TEIDLRF S KEGRL VIVAPV RF+D +G+D  IE +G P KVINAFGPEVIGENVEGK
Sbjct: 142 TEIDLRFASPKEGRLSVIVAPVLRFADNLGDDVKIENIGQPAKVINAFGPEVIGENVEGK 201

Query: 194 VISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYLFNVTANGLQWKRHYGDLKRIADS 253
           V+S +VAEH GR YYQFELEPPHV+ITATAAGNRLYLF+VT NGLQWKRHY DLKRIA S
Sbjct: 202 VLSSNVAEHDGRLYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYKDLKRIASS 260

Query: 254 FRVV 258
           FR+V
Sbjct: 262 FRIV 260

[Close]

BLAST of CmUC09G169350 vs. TAIR 10
Match: AT3G56650.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein )

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-17
Identity = 72/275 (26.18%), Postives = 125/275 (45.45%), Query Frame = 0


Query: 1   MGTTLFNPFSSLFHQPPHSFLP----KRVFAVHGAQQENHNFSTILNRRSVLMSGVSLLS 60
           M T    P S +F   P S        RV      QQ+      +L + +V +  +  L 
Sbjct: 1   MATASLVPTSKIFSVSPKSSASIKARSRVVVASSQQQQQPRRRELLLKSAVAIPAILQLK 60

Query: 61  SAALGLQRECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFS 120
            A +   RE        +  G    LS  D        +P +      +    + PY F 
Sbjct: 61  EAPISAARE--------VEVGSYLPLSPSDPSFVLFKAKPSDTP---ALRAGNVQPYQFV 120

Query: 121 VPEDWEEVPVSIADLGG--------TEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATI 180
           +P +W+++ ++    G           I+++F + K+G++ V+ +P+ R ++    +ATI
Sbjct: 121 LPPNWKQLRIANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVASPLIRLTN--KPNATI 180

Query: 181 EMVGPPEKVINAFGPEVIGENVEG-KVISMSVAEHSGRTYYQFELEPP------HVIITA 240
           E +G PEKVI + GP V G + +  +++  S+ +   +TYY++ LE P      H +  A
Sbjct: 181 EDLGEPEKVIASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYVLETPFALTGSHNLAKA 240

Query: 241 TAAGNRLYLFNVTANGLQWKRHYGDLKRIADSFRV 257
           TA G+ + LF V+A   QW+     L+ I DSF++
Sbjct: 241 TAKGSTVVLFVVSATEKQWQSSQKTLEAILDSFQL 262

The following BLAST results are available for this feature:

BLAST of CmUC09G169350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139653.1	1.1e-128	88.01	psbP domain-containing protein 4, chloroplastic isoform X1 [Cucumis sativus] >KG...	[more]
XP_038896887.1	1.1e-128	89.14	psbP domain-containing protein 4, chloroplastic [Benincasa hispida]	[more]
KAA0037784.1	1.6e-124	86.94	psbP domain-containing protein 4 [Cucumis melo var. makuwa] >TYK27307.1 psbP dom...	[more]
XP_008461486.1	2.1e-124	86.94	PREDICTED: psbP domain-containing protein 4, chloroplastic isoform X1 [Cucumis m...	[more]
XP_022975015.1	1.7e-118	85.06	psbP domain-containing protein 4, chloroplastic [Cucurbita maxima]	[more]

BLAST of CmUC09G169350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49292	5.9e-98	73.36	PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9LXX5	1.9e-16	26.18	PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of CmUC09G169350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K501	5.1e-129	88.01	PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G322590 PE=4 S...	[more]
A0A5A7T2U1	7.6e-125	86.94	PsbP domain-containing protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CEV2	1.0e-124	86.94	psbP domain-containing protein 4, chloroplastic isoform X1 OS=Cucumis melo OX=36...	[more]
A0A6J1IFH3	8.2e-119	85.06	psbP domain-containing protein 4, chloroplastic OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1FDH1	4.1e-118	84.67	psbP domain-containing protein 4, chloroplastic OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of CmUC09G169350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G77090.1	4.2e-99	73.36	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein	[more]
AT3G56650.1	1.4e-17	26.18	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002683	PsbP, C-terminal	PFAM	PF01789	PsbP	coord: 113..256 e-value: 1.2E-11 score: 45.0
None	No IPR available	GENE3D	3.40.1000.10	Mog1/PsbP, alpha/beta/alpha sandwich	coord: 109..257 e-value: 6.7E-26 score: 93.2
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 31..257
None	No IPR available	PANTHER	PTHR31407:SF38	PSBP DOMAIN-CONTAINING PROTEIN 4, CHLOROPLASTIC	coord: 31..257
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	SUPERFAMILY	55724	Mog1p/PsbP-like	coord: 105..256

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC09G169350.1	CmUC09G169350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding