CmUC09G168830 (gene) Watermelon (USVL531) v1

Overview
NameCmUC09G168830
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionUnknown protein
LocationCmU531Chr09: 8389616 .. 8390949 (-)
RNA-Seq ExpressionCmUC09G168830
SyntenyCmUC09G168830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAATGGCTCTCTCCTTTGCCAATCGATCTTCATTCCTTTGCATCGTTTGTATTGCTCTCCTTCTCGTTGCAGGTAATGAATTCACACTCTCTTATTATATTAACATTATTTCTACTTTTCCTTTATCTTTACTCTTTCCATCATCTTTAATATATATCACTCATTATATTGGTAAATTTTAAACCAATAATAAATTTACATATGGGCTTCAAACCGTTGTTTTCAAATATAAAGCAAAATGAGTCGATTTATTTACAAATAAAAATACTGCAGTCTATTAGTTAATAGACAACGATAGACATGACTTACAGTAATATTTTGTTATATTTGAAAATATTTCCAATAGTTTTGTTATTTAAAACAATTACACGACTCCAAATTAATGAGAGTTGAAAAGTCAAACCAAACCAATCCACTGGTTTGGTTTGGTTTTTTAGTACAAAATTGAACATGGTTTGTATTTAGAGAAAACAAAAAAGTATTGATTCAGATCGGTTTTTTATTGGAAAAACCAAACCGAATTGAAGGTATATATACCCTTAAAATGCACTCTAACATTAGGTATTTTAACTACTATGATGCATGTATATATATTTGTTTGTTTAGAAAGAAAAAAAAAATATTGATTACTATAGAGCATGTATGTTTGTCGTTCAGAAAAGTGCAAAGAAAAAACAAAAATTTTCAATTTCGATTTGTAAAAAAAGACATAGATTCAAATTTAAAAATAACCCATTCAAAACAAAAGTAGAAATAAAACTAAAATAAATGAGAAGAAAAAAAAATGCTAAAAACCGGGAACCAAACGGATAATAACCTGAACCAAATAAAAACCAATCCGTTAGTTTTGTTCTTATTGGATTTCTATTTAGATCTCTTCTTTATAAAAACGGTTTGGTTTAGTTTGATTGTTGGCTGATCCTAAAATAGACAAAATCTAACCAACAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTGGTTGATTGGTGTGATTGGCAGGGACAGGACCAGAGGCAACATGCGGGCAAACGACAACTGGGGCATGTTTGGGAGGCTGCTCAGGTTTCCCAAATTGTAACAAAAGTTGCCTTGATGAAGGGTATAAGCAAGGTGGTAAATGCTACCCCGACGGTTTATGCTGCTGTTCTAATTTCTGATTCCTATGCTCTCAGCTTTTCTTCTTTTCAATCCAATAAATTTTCAACTCTCTACATATTGTATTTCTTCTTCATTTCTATGCCCATCAAGGCTTTAATTTGCCGTTGAACTACAATATGTAAATTATGTTCTGTGATTGTTACAAACCCCACATTTTTATATCAATC

mRNA sequence

AAAAATGGCTCTCTCCTTTGCCAATCGATCTTCATTCCTTTGCATCGTTTGTATTGCTCTCCTTCTCGTTGCAGGGACAGGACCAGAGGCAACATGCGGGCAAACGACAACTGGGGCATGTTTGGGAGGCTGCTCAGGTTTCCCAAATTGTAACAAAAGTTGCCTTGATGAAGGGTATAAGCAAGGTGGTAAATGCTACCCCGACGGTTTATGCTGCTGTTCTAATTTCTGATTCCTATGCTCTCAGCTTTTCTTCTTTTCAATCCAATAAATTTTCAACTCTCTACATATTGTATTTCTTCTTCATTTCTATGCCCATCAAGGCTTTAATTTGCCGTTGAACTACAATATGTAAATTATGTTCTGTGATTGTTACAAACCCCACATTTTTATATCAATC

Coding sequence (CDS)

ATGGCTCTCTCCTTTGCCAATCGATCTTCATTCCTTTGCATCGTTTGTATTGCTCTCCTTCTCGTTGCAGGGACAGGACCAGAGGCAACATGCGGGCAAACGACAACTGGGGCATGTTTGGGAGGCTGCTCAGGTTTCCCAAATTGTAACAAAAGTTGCCTTGATGAAGGGTATAAGCAAGGTGGTAAATGCTACCCCGACGGTTTATGCTGCTGTTCTAATTTCTGA

Protein sequence

MALSFANRSSFLCIVCIALLLVAGTGPEATCGQTTTGACLGGCSGFPNCNKSCLDEGYKQGGKCYPDGLCCCSNF
Homology
[Close]
BLAST of CmUC09G168830 vs. NCBI nr
Match: KAG6575964.1 (hypothetical protein SDJN03_26603, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 61.6 bits (148), Expect = 3.3e-06
Identity = 32/77 (41.56%), Postives = 44/77 (57.14%), Query Frame = 0 

Query: 1  MALSFANRSSFLCIVCIALLLVAGTGPEATCGQTTTGACLGGCSGFPNCNKSCLDEGYKQ 60
          MA SFA RSSF  ++C+A +L+AG G            CLG CS  PNC  +C++ G+ +
Sbjct: 1  MASSFAMRSSFSFLLCMAFVLIAGLGTRPGSAINLAVVCLGPCSKIPNCENACINAGHAK 60

Query: 61 GGKC---YPDGLCCCSN 75
          GG+C   + D   CC N
Sbjct: 61 GGECLGFFKDPPSCCCN 77

[Close]
BLAST of CmUC09G168830 vs. NCBI nr
Match: PIM97201.1 (hypothetical protein CDL12_30331 [Handroanthus impetiginosus])

HSP 1 Score: 53.5 bits (127), Expect = 9.0e-04
Identity = 28/74 (37.84%), Postives = 42/74 (56.76%), Query Frame = 0 

Query: 4  SFANRSSFLCIVCIALLLVAGTGPEATCGQTTTGACLGGCSGFPNCNKSCLDEGYKQGGK 63
          S A    F+ I+C+ L+L++G   +   G      C+G CS F +CNK+C+ +GY+ GG 
Sbjct: 3  SCAQNDYFMGILCLILVLISG---QVVKGIKEPFVCIGKCSDFEDCNKACISKGYQLGGY 62

Query: 64 CYP----DGLCCCS 74
          CY     D  CCC+
Sbjct: 63 CYGFSVLDLACCCT 73

[Close]
BLAST of CmUC09G168830 vs. ExPASy TrEMBL
Match: A0A2G9FW97 (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_30331 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.3e-04
Identity = 28/74 (37.84%), Postives = 42/74 (56.76%), Query Frame = 0 

Query: 4  SFANRSSFLCIVCIALLLVAGTGPEATCGQTTTGACLGGCSGFPNCNKSCLDEGYKQGGK 63
          S A    F+ I+C+ L+L++G   +   G      C+G CS F +CNK+C+ +GY+ GG 
Sbjct: 3  SCAQNDYFMGILCLILVLISG---QVVKGIKEPFVCIGKCSDFEDCNKACISKGYQLGGY 62

Query: 64 CYP----DGLCCCS 74
          CY     D  CCC+
Sbjct: 63 CYGFSVLDLACCCT 73

The following BLAST results are available for this feature:
BLAST of CmUC09G168830 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6575964.13.3e-0641.56hypothetical protein SDJN03_26603, partial [Cucurbita argyrosperma subsp. sorori... [more]
PIM97201.19.0e-0437.84hypothetical protein CDL12_30331 [Handroanthus impetiginosus][more]
BLAST of CmUC09G168830 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC09G168830 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2G9FW974.3e-0437.84Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_30331 P... [more]
BLAST of CmUC09G168830 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC09G168830.1CmUC09G168830.1mRNA