CmUC09G168090 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC09G168090
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	UPF0481 protein At3g47200-like
Location	CmU531Chr09: 7679486 .. 7680360 (+)
RNA-Seq Expression	CmUC09G168090
Synteny	CmUC09G168090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAAGAAGGGTAAGGTTGGAGGAGATGATGAAGAGATGATTATTATGGAGAATAATAAAAGGGAGCGTGATAATGTTGTGATATCCATAGAACAAATGCTCATGGAACTGCCTCTTATCAATCCACAAAGCTTCATGTATAAAGTTCCCAAACTACACTACAAGGTTAACGAAACAGCCTATACGCCTCAACTCATTTCAATTGGGCCATTCCACCATGGCCAACCACAATTGATGACCGCACAACAATATAAAAGCTTCGAGCTCTCAAAACCTATCTTTCTCGTGTAAACATGAGAGTTGAAGAAGCCATGAGCTTGGCCAAGTTATGGGAGGAAAAAGCTCGTAGTTGCTATGGACATCCCATATACACATGAACAAACAAGACTTTGCCAAAATGATACTCTTAGATGGTTGTTTCATATTAGAGTTTATGAATTCAATAATCTTGCATAGTTGTTTTGGCGAAGTTGATGAGGATTGGATAGATTATTTACTCCTCAGTGGTCTAATGTTCGATCTAAAACGTGACTTAACCATGTTTGAGAATCAACTTCCTTTCTTTGTTCTTCAACAATTATTTGATCTATTACCATTCCCACAAAACAATAATGAAAAAGATCCAACTATCTACTTTATGGAATGTATGGAAAAGTTGTTTACTGCGACCACAGTTCAATATGAGTTTCCTTCTAGCCTGATCTCTAGTAGTAAACACAACGTAAAACACTTGGTTGATTTATTAAGACTCTTCTACGAGCCCTCACCCGAGACAGAGGCCGGAGTATAAGAAATTCATTTGGACACAAGAGATAAAGTTTATTCATCCACCAACTATTACTGAGCTCTGCGAGGCTGGTGTCAAGATATAG

mRNA sequence

ATGGATAAGAAGGGTAAGGTTGGAGGAGATGATGAAGAGATGATTATTATGGAGAATAATAAAAGGGAGCGTGATAATGTTGTGATATCCATAGAACAAATGCTCATGGAACTGCCTCTTATCAATCCACAAAGCTTCATGTATAAAGTTCCCAAACTACACTACAAGGTTAACGAAACAGCCTATACGCCTCAACTCATTTCAATTGGGCCATTCCACCATGGCCAACCACAATTGATGACCGCACAACAATATAAAAGCTTCGAGCTCTCAAAACCTATCTTTCTCGTCCCTCACCCGAGACAGAGGCCGGAGTATAAGAAATTCATTTGGACACAAGAGATAAAGTTTATTCATCCACCAACTATTACTGAGCTCTGCGAGGCTGGTGTCAAGATATAG

Coding sequence (CDS)

ATGGATAAGAAGGGTAAGGTTGGAGGAGATGATGAAGAGATGATTATTATGGAGAATAATAAAAGGGAGCGTGATAATGTTGTGATATCCATAGAACAAATGCTCATGGAACTGCCTCTTATCAATCCACAAAGCTTCATGTATAAAGTTCCCAAACTACACTACAAGGTTAACGAAACAGCCTATACGCCTCAACTCATTTCAATTGGGCCATTCCACCATGGCCAACCACAATTGATGACCGCACAACAATATAAAAGCTTCGAGCTCTCAAAACCTATCTTTCTCGTCCCTCACCCGAGACAGAGGCCGGAGTATAAGAAATTCATTTGGACACAAGAGATAAAGTTTATTCATCCACCAACTATTACTGAGCTCTGCGAGGCTGGTGTCAAGATATAG

Protein sequence

MDKKGKVGGDDEEMIIMENNKRERDNVVISIEQMLMELPLINPQSFMYKVPKLHYKVNETAYTPQLISIGPFHHGQPQLMTAQQYKSFELSKPIFLVPHPRQRPEYKKFIWTQEIKFIHPPTITELCEAGVKI

Homology

[Close]

BLAST of CmUC09G168090 vs. NCBI nr
Match: XP_038899472.1 (UPF0481 protein At3g47200-like [Benincasa hispida])

HSP 1 Score: 114.8 bits (286), Expect = 5.8e-22
Identity = 60/95 (63.16%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 1   MDKKGKVGGDDEEMIIMENNK-----RERDNVVISIEQMLMELPLINPQSFMYKVPKLHY 60
           M KKG+V GD+E  +IMENN       E D+VVISIE+M+MELP +NP S +YKVPK H 
Sbjct: 20  MSKKGEVEGDEE--MIMENNNNNKDVEEGDDVVISIEKMIMELPSVNPNSSLYKVPKGHI 79

Query: 61  KVNETAYTPQLISIGPFHHGQPQLMTAQQYKSFEL 91
           K NET YTP+ ISIGPFHHGQP+LM A+QYK + L
Sbjct: 80  KTNETMYTPRFISIGPFHHGQPELMAAEQYKLWAL 112

[Close]

BLAST of CmUC09G168090 vs. NCBI nr
Match: XP_004149334.2 (UPF0481 protein At3g47200 [Cucumis sativus] >KGN44649.1 hypothetical protein Csa_016145 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-16
Identity = 51/94 (54.26%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 8   GGDDEEMIIMENNKR---------ERDNVVISIEQMLMELPLINPQSFMYKVPKLHYKVN 67
           G DD+EM  MEN K+           D+VV+SIE+M M+LP INP+ F+Y+VP+LH K+N
Sbjct: 9   GHDDQEM--MENYKKAGFEDQEENNDDDVVVSIEKMFMKLPPINPKCFIYQVPELHRKMN 68

Query: 68  ETAYTPQLISIGPFHHGQPQLMTAQQYKSFELSK 93
           + AYTPQLISIGP HHGQ Q   A+QYK + L +
Sbjct: 69  DIAYTPQLISIGPLHHGQQQYKAAEQYKVYALKR 100

[Close]

BLAST of CmUC09G168090 vs. NCBI nr
Match: XP_038896405.1 (UPF0481 protein At3g47200-like [Benincasa hispida])

HSP 1 Score: 96.7 bits (239), Expect = 1.6e-16
Identity = 44/67 (65.67%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 20 NKRERDNVVISIEQMLMELPLINPQSFMYKVPKLHYKVNETAYTPQLISIGPFHHGQPQL 79
          +K E D+V ISI++ LMELP  NP+SF+YKVP+L  K+NET YTPQ ISIGPFHHG+P+L
Sbjct: 2  DKGEGDHVTISIKKTLMELPPTNPESFLYKVPRLRRKMNETVYTPQFISIGPFHHGRPEL 61

Query: 80 MTAQQYK 87
          M  +QYK
Sbjct: 62 MAVEQYK 68

[Close]

BLAST of CmUC09G168090 vs. NCBI nr
Match: XP_022961909.1 (putative UPF0481 protein At3g02645 isoform X1 [Cucurbita moschata] >XP_022961910.1 putative UPF0481 protein At3g02645 isoform X2 [Cucurbita moschata] >XP_022961911.1 putative UPF0481 protein At3g02645 isoform X1 [Cucurbita moschata])

HSP 1 Score: 71.6 bits (174), Expect = 5.6e-09
Identity = 33/70 (47.14%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 17 MENNKRERDNVVISIEQMLMELPLINPQSFMYKVPKLHYKVNETAYTPQLISIGPFHHGQ 76
          +E  ++ R NVV+SI++M+ +LP +N +  +++VPKL  K+N  AYTPQ+ISIGPFHH +
Sbjct: 7  VEQVEQPRGNVVLSIKEMMDKLPPVNVECSIFRVPKLLRKMNHRAYTPQVISIGPFHHHR 66

Query: 77 PQLMTAQQYK 87
            L+  + YK
Sbjct: 67 KDLLATEPYK 76

[Close]

BLAST of CmUC09G168090 vs. NCBI nr
Match: XP_023547065.1 (putative UPF0481 protein At3g02645 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 71.6 bits (174), Expect = 5.6e-09
Identity = 33/70 (47.14%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 17 MENNKRERDNVVISIEQMLMELPLINPQSFMYKVPKLHYKVNETAYTPQLISIGPFHHGQ 76
          +E  ++ R NVV+SI++M+ +LP +N +  +++VPKL  K+N  AYTPQ+ISIGPFHH +
Sbjct: 7  VEQVEQPRGNVVLSIKEMMDKLPPVNVECSIFRVPKLLRKMNHRAYTPQVISIGPFHHHR 66

Query: 77 PQLMTAQQYK 87
            L+  + YK
Sbjct: 67 KDLLATEPYK 76

[Close]

BLAST of CmUC09G168090 vs. ExPASy TrEMBL
Match: A0A0A0K6U9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G363030 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 6.1e-17
Identity = 51/94 (54.26%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 8   GGDDEEMIIMENNKR---------ERDNVVISIEQMLMELPLINPQSFMYKVPKLHYKVN 67
           G DD+EM  MEN K+           D+VV+SIE+M M+LP INP+ F+Y+VP+LH K+N
Sbjct: 9   GHDDQEM--MENYKKAGFEDQEENNDDDVVVSIEKMFMKLPPINPKCFIYQVPELHRKMN 68

Query: 68  ETAYTPQLISIGPFHHGQPQLMTAQQYKSFELSK 93
           + AYTPQLISIGP HHGQ Q   A+QYK + L +
Sbjct: 69  DIAYTPQLISIGPLHHGQQQYKAAEQYKVYALKR 100

[Close]

BLAST of CmUC09G168090 vs. ExPASy TrEMBL
Match: A0A6J1HDJ8 (putative UPF0481 protein At3g02645 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462537 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.7e-09
Identity = 33/70 (47.14%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 17 MENNKRERDNVVISIEQMLMELPLINPQSFMYKVPKLHYKVNETAYTPQLISIGPFHHGQ 76
          +E  ++ R NVV+SI++M+ +LP +N +  +++VPKL  K+N  AYTPQ+ISIGPFHH +
Sbjct: 7  VEQVEQPRGNVVLSIKEMMDKLPPVNVECSIFRVPKLLRKMNHRAYTPQVISIGPFHHHR 66

Query: 77 PQLMTAQQYK 87
            L+  + YK
Sbjct: 67 KDLLATEPYK 76

[Close]

BLAST of CmUC09G168090 vs. ExPASy TrEMBL
Match: A0A5A7VCD8 (UPF0481 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002630 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.7e-09
Identity = 33/74 (44.59%), Postives = 49/74 (66.22%), Query Frame = 0


Query: 13 EMIIMENNKRERDNVVISIEQMLMELPLINPQSFMYKVPKLHYKVNETAYTPQLISIGPF 72
          E +I E  ++   ++VISI+  L +LP +N +  +Y+VPKL  ++N  AY PQ+ISIGPF
Sbjct: 14 EAVISEVKRKHCGDIVISIKSKLEQLPAVNTECSIYRVPKLLCQMNRIAYVPQVISIGPF 73

Query: 73 HHGQPQLMTAQQYK 87
          HHG   L   ++YK
Sbjct: 74 HHGSKDLNATERYK 87

[Close]

BLAST of CmUC09G168090 vs. ExPASy TrEMBL
Match: A0A1S4DVF8 (UPF0481 protein At3g47200-like OS=Cucumis melo OX=3656 GN=LOC103488291 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.7e-09
Identity = 33/74 (44.59%), Postives = 49/74 (66.22%), Query Frame = 0


Query: 13 EMIIMENNKRERDNVVISIEQMLMELPLINPQSFMYKVPKLHYKVNETAYTPQLISIGPF 72
          E +I E  ++   ++VISI+  L +LP +N +  +Y+VPKL  ++N  AY PQ+ISIGPF
Sbjct: 14 EAVISEVKRKHCGDIVISIKSKLEQLPAVNTECSIYRVPKLLCQMNRIAYVPQVISIGPF 73

Query: 73 HHGQPQLMTAQQYK 87
          HHG   L   ++YK
Sbjct: 74 HHGSKDLNATERYK 87

[Close]

BLAST of CmUC09G168090 vs. ExPASy TrEMBL
Match: A0A067JPY4 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_25891 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 8.0e-09
Identity = 36/90 (40.00%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 25  DNVVISIEQMLMELPLINPQSFMYKVPKLHYKVNETAYTPQLISIGPFHHGQPQLMTAQQ 84
           +N+ ISI + L  L  ++ +  +YKVPK+ Y++NE AYTPQ++SIGPFHHG+P+L   ++
Sbjct: 10  ENLSISIGKDLEALHPLSDECCIYKVPKILYRLNEVAYTPQVVSIGPFHHGKPELQLMEE 69

Query: 85  YKSFELSKPIFLVPHPRQRPEYKKFIWTQE 115
           +K     + + L        EY +FI  +E
Sbjct: 70  HKRRYTKEFLQLSTSHVSVKEYVEFIKKRE 99

[Close]

BLAST of CmUC09G168090 vs. TAIR 10
Match: AT4G31980.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 2.1e-06
Identity = 25/67 (37.31%), Postives = 39/67 (58.21%), Query Frame = 0


Query: 20  NKRERDNVVISIEQMLMELPLINPQSFMYKVPKLHYKVNETAYTPQLISIGPFHHGQPQL 79
           N+ E D +V SI+  L  L  ++ +  +YKVP    ++N  AYTP+L+S GP H G+ +L
Sbjct: 268 NQNEGDALVDSIKAKLAFLSSLSTKCCIYKVPNKLRRLNPDAYTPRLVSFGPLHRGKEEL 327

Query: 80  MTAQQYK 87
              +  K
Sbjct: 328 QAMEDQK 334

[Close]

BLAST of CmUC09G168090 vs. TAIR 10
Match: AT3G47210.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 46.2 bits (108), Expect = 2.4e-05
Identity = 18/40 (45.00%), Postives = 29/40 (72.50%), Query Frame = 0


Query: 47  MYKVPKLHYKVNETAYTPQLISIGPFHHGQPQLMTAQQYK 87
           +++VPK   ++N  AY P+++SIGP+HHG+  L   QQ+K
Sbjct: 95  IFRVPKSFAEMNPEAYKPKVVSIGPYHHGRKHLEMIQQHK 134

[Close]

BLAST of CmUC09G168090 vs. TAIR 10
Match: AT5G22540.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 43.5 bits (101), Expect = 1.5e-04
Identity = 16/38 (42.11%), Postives = 27/38 (71.05%), Query Frame = 0


Query: 49 KVPKLHYKVNETAYTPQLISIGPFHHGQPQLMTAQQYK 87
          ++P+   ++N  AY P+++SIGP+HHG+  L   QQ+K
Sbjct: 35 RIPQSLARINLKAYEPKIVSIGPYHHGKEHLKMTQQHK 72

[Close]

BLAST of CmUC09G168090 vs. TAIR 10
Match: AT3G47200.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 43.1 bits (100), Expect = 2.0e-04
Identity = 16/40 (40.00%), Postives = 28/40 (70.00%), Query Frame = 0


Query: 47 MYKVPKLHYKVNETAYTPQLISIGPFHHGQPQLMTAQQYK 87
          +++VP+    +N  AY P+++SIGP+H+G+  L   QQ+K
Sbjct: 48 IFRVPESFVALNPKAYKPKVVSIGPYHYGEKHLQMIQQHK 87

[Close]

BLAST of CmUC09G168090 vs. TAIR 10
Match: AT3G47200.2 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 43.1 bits (100), Expect = 2.0e-04
Identity = 16/40 (40.00%), Postives = 28/40 (70.00%), Query Frame = 0


Query: 47 MYKVPKLHYKVNETAYTPQLISIGPFHHGQPQLMTAQQYK 87
          +++VP+    +N  AY P+++SIGP+H+G+  L   QQ+K
Sbjct: 48 IFRVPESFVALNPKAYKPKVVSIGPYHYGEKHLQMIQQHK 87

The following BLAST results are available for this feature:

BLAST of CmUC09G168090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899472.1	5.8e-22	63.16	UPF0481 protein At3g47200-like [Benincasa hispida]	[more]
XP_004149334.2	1.3e-16	54.26	UPF0481 protein At3g47200 [Cucumis sativus] >KGN44649.1 hypothetical protein Csa...	[more]
XP_038896405.1	1.6e-16	65.67	UPF0481 protein At3g47200-like [Benincasa hispida]	[more]
XP_022961909.1	5.6e-09	47.14	putative UPF0481 protein At3g02645 isoform X1 [Cucurbita moschata] >XP_022961910...	[more]
XP_023547065.1	5.6e-09	47.14	putative UPF0481 protein At3g02645 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmUC09G168090 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC09G168090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6U9	6.1e-17	54.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G363030 PE=4 SV=1	[more]
A0A6J1HDJ8	2.7e-09	47.14	putative UPF0481 protein At3g02645 isoform X1 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A5A7VCD8	4.7e-09	44.59	UPF0481 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00263...	[more]
A0A1S4DVF8	4.7e-09	44.59	UPF0481 protein At3g47200-like OS=Cucumis melo OX=3656 GN=LOC103488291 PE=4 SV=1	[more]
A0A067JPY4	8.0e-09	40.00	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_25891 PE=4 SV=1	[more]

BLAST of CmUC09G168090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G31980.1	2.1e-06	37.31	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247,...	[more]
AT3G47210.1	2.4e-05	45.00	Plant protein of unknown function (DUF247)	[more]
AT5G22540.1	1.5e-04	42.11	Plant protein of unknown function (DUF247)	[more]
AT3G47200.1	2.0e-04	40.00	Plant protein of unknown function (DUF247)	[more]
AT3G47200.2	2.0e-04	40.00	Plant protein of unknown function (DUF247)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004158	Protein of unknown function DUF247, plant	PFAM	PF03140	DUF247	coord: 48..90 e-value: 4.9E-10 score: 39.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC09G168090.1	CmUC09G168090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane