CmUC09G166900 (gene) Watermelon (USVL531) v1

Overview
NameCmUC09G166900
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionUnknown protein
LocationCmU531Chr09: 6205242 .. 6205550 (-)
RNA-Seq ExpressionCmUC09G166900
SyntenyCmUC09G166900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGGCGTAATTAGGACCAAAATATACAAGGCCAACCCTCCGCTATCTCGGACGAACCGACACGACGGTGGCGGCGGCGGCGACGGCGACGGCGGCTACCAACTGAACGGAAATGATGGAATAAACCTCGCGGATGAAGGCCCATCGGAGGTGCGGCGGCTTCAGCATCACTGGGAAACGGGGGCCTACTCCCTCCTCCACGTCAGGCTTCCGGTAGGGGTGATTCCACATCACATTTGGTCCGGAAATCGGCGGCGCGTGGTTTTATACGCGCTGTTTAGTTCTTCAGGATGTACCAGAAAATGA

mRNA sequence

ATGAAAGGCGTAATTAGGACCAAAATATACAAGGCCAACCCTCCGCTATCTCGGACGAACCGACACGACGGTGGCGGCGGCGGCGACGGCGACGGCGGCTACCAACTGAACGGAAATGATGGAATAAACCTCGCGGATGAAGGCCCATCGGAGGTGCGGCGGCTTCAGCATCACTGGGAAACGGGGGCCTACTCCCTCCTCCACGTCAGGCTTCCGGTAGGGGTGATTCCACATCACATTTGGTCCGGAAATCGGCGGCGCGTGGTTTTATACGCGCTGTTTAGTTCTTCAGGATGTACCAGAAAATGA

Coding sequence (CDS)

ATGAAAGGCGTAATTAGGACCAAAATATACAAGGCCAACCCTCCGCTATCTCGGACGAACCGACACGACGGTGGCGGCGGCGGCGACGGCGACGGCGGCTACCAACTGAACGGAAATGATGGAATAAACCTCGCGGATGAAGGCCCATCGGAGGTGCGGCGGCTTCAGCATCACTGGGAAACGGGGGCCTACTCCCTCCTCCACGTCAGGCTTCCGGTAGGGGTGATTCCACATCACATTTGGTCCGGAAATCGGCGGCGCGTGGTTTTATACGCGCTGTTTAGTTCTTCAGGATGTACCAGAAAATGA

Protein sequence

MKGVIRTKIYKANPPLSRTNRHDGGGGGDGDGGYQLNGNDGINLADEGPSEVRRLQHHWETGAYSLLHVRLPVGVIPHHIWSGNRRRVVLYALFSSSGCTRK
Homology
[Close]
BLAST of CmUC09G166900 vs. ExPASy TrEMBL
Match: A0A1J3DDA6 (Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=GA_TR13075_c1_g1_i1_g.41639 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.4e-05
Identity = 30/62 (48.39%), Postives = 40/62 (64.52%), Query Frame = 0 

Query: 17 SRTNRHDGGGGGDGDGGYQLNGNDGINLADEGPSEVRRLQHHWETGAYSLLHVRLPVGVI 76
          +R N  D  GGGDGDG  +L+G+DGI+L DE PSE+  L HH      S L + LP+ ++
Sbjct: 36 NRVNLDD--GGGDGDGDEKLDGDDGIDLPDERPSELGALHHHRVERRLSRLQIMLPIALV 95

Query: 77 PH 79
          PH
Sbjct: 96 PH 95

[Close]
BLAST of CmUC09G166900 vs. ExPASy TrEMBL
Match: A0A1J3FL73 (Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=LC_TR10206_c1_g1_i1_g.35960 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.1e-05
Identity = 30/62 (48.39%), Postives = 39/62 (62.90%), Query Frame = 0 

Query: 17 SRTNRHDGGGGGDGDGGYQLNGNDGINLADEGPSEVRRLQHHWETGAYSLLHVRLPVGVI 76
          +R N  D  GGGDGDG  +L+G+DGI+L DE PSE   L HH      S L + LP+ ++
Sbjct: 36 NRVNLDD--GGGDGDGDEKLDGDDGIDLPDERPSEFGALHHHRVERRLSRLQIMLPIALV 95

Query: 77 PH 79
          PH
Sbjct: 96 PH 95

The following BLAST results are available for this feature:
BLAST of CmUC09G166900 vs.
Match NameE-valueIdentityDescription
BLAST of CmUC09G166900 vs.
Match NameE-valueIdentityDescription
BLAST of CmUC09G166900 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1J3DDA62.4e-0548.39Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=GA_TR130... [more]
A0A1J3FL734.1e-0548.39Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=LC_TR102... [more]
BLAST of CmUC09G166900 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..43

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC09G166900.1CmUC09G166900.1mRNA