CmUC09G166220 (gene) Watermelon (USVL531) v1

Overview
NameCmUC09G166220
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionSOSS complex subunit B homolog
LocationCmU531Chr09: 5418031 .. 5420643 (+)
RNA-Seq ExpressionCmUC09G166220
SyntenyCmUC09G166220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGCCGGTGGAATTGAAGCCGTGAAGGTGGCGGCGGAGGTGGCGGTGGAGACGTGGAGAAAGGATTTGGGCGTGGGACTCCTTTTAGGGTTTGGACAAAAGATTTTAGGGTTTTGATTTTGTAAATTTTGGGCTGACTGGGCTGCTGGGCTTTTTAAATCTAAAAGAAAAAAGAACAAAAAATAAATAAATAAATAAATAAATCTAGACTCTAGTGTTTCATTTGAAAATATGGCAAAATTAAATTAAATTTTTAATTATTTATCTGCATATATTTTTGAAAAATTATTATAAAAAATATATATATCAAATTATTTACAAATATAAAATAGTTTCTAAGTGATAGAAATTTATCACGATTTATCACTAATTAATAGAAATTTATTATGGTCTACCCCTGAAATTTTTTTATATTTATAAAAAAAAAAAATTGTTCATTTTACTATATTTGAAAAGTCAAATATTGATTACATTTAAATAAAAATTATTTTCCAATAATTGGTTAGATAGTTTTTTAATTATTTTAAATTATAAGTATTCTCTATATTATAAATTTAAATTGATCTTCCATTGTGATTTTGGATTAGTTTGAATCTAGTTTTTTTGTTAAATTGATCTTTTATTATAATCTTGAGTACCGAACTATGGAGGGATTCCCCACGAGATTTCGCAAGCTTGAAGATGAAGAGGTTTAAAAAAAAAAAACTGAAGTTTTAAACGTGTTAACATTCTTTTGATTTGATTTGGTTGATTTTGTTTTGAATATTTAATAAATTAATTAATTAATTCGTTTAGCTATTTTTAGGCATGAAAACAGCAGTAGCTATTTTTCAAAAATGGCTTTCAATTTTAGTAATTTGTCCAGTTACTGTTTAAAATAAAATAAATAGAAAATGTCTGCATTAGGTCTTTTAAACAATTGTGAATATGCGATAATTGCTAGAGGTATGTTGTATAAATTTTTAAATTGATAAAGGAAAAAATAGTCCAAAAAATTTTACAAATATTGCTCTTTTTTGACATATAGAAAATCAATATAAATAGTTTTTTGAAAATTATGAAGCTATTTGATAGAGATTGAAATATTAAACACGTTTCAAAAAAATTTCTTTTGCTCGAGAGATGAACGTTTTATTTTATTTATGTTTAATCAATTCTGAGCTTCAGATCATAAAGTTTGATTTACTTCATTTCTCTTTTTTTTTCCTTTTTTTTTTTTTTTTTTTTTTTGGAAGTTCATACCAAAATTAAGAAAGCAAAGTTGCACAAGATTTACTTGTTATTCATATTGAAAGTTCTCTACTGGTTTGTAGAAAGTACTAAATATGGATTCAAGTTTTGTAAAAACATTTTAACTTAGGAACTTTCAATAAAATGCCCATTTAATTGTATTTTGATAATTGTTCTTTTAATTCAAAATAGGGAGGGAGAATTCAAACCTTTAGTCCCAAAGTTGATTGCACATACTTATGTTAGTAGGACTATGCTTATTGGACATTTTAATAATTGTTTTAAACTTTCAAATATGCATATATTTAGTTAATGAATTTGAAATATGATATGTTTATTATCTATCCAATTTTCTTTTTGACAAAAAAAAAAAATACCACATAAATGAAGACTAGACATGGAACAACACCTCCAAAATGTCAGAAAAAACCACTCTTGCAAATAGATGATCCAACAATTTTCTTCGATGAAGAGTGAACTAAATAAAACCAAAGCCCACAAACGAACATCACTGACACCCAAAGGAAAACTAGCGTAACAAGGGACCAAACATCATTAGTAACAAATATACTAACTTGTCACCGACGCCCAAAGAGAAACAGAGTAACAATGTACAGAGAAAGAACAGTATAAACTATCTAACTAAAGACCATGTGACAAACTAGTTATAAACCAAACACCTCAAAAAAGCAACTCCATACATGCCACACAAAGTTGGCAATTTCAAAGTACATAATCAAAGTTATCCTCTGCTCTCCAATGAAGGCTAATCCAACGATTTTTCAGACAAATATAGCTTAAACTTCTACAACATTCTTCTGGTAATAGTTTTAGAATGATGTGCTTGAAAGCAGAGAATGTTTGTTTGTTTGTGGCAGTTAAGAAGCAAGCAAATGAAAGAGGAAAGGAAACAATTTTAGGACAACCAAGCATGTCCATCCTTGGAGGCCAATGAAACAGCTGCAGTTCACTTCCAGCAATGGGGAGATTGTGATGCGGTCGAGCCAAGCAACACTACAGCCAAACAACCCAGTCTTGACAGCAGGGAAGAGAGGGAAGATAGAGAAGGAAAGAGAGTAGACTTCAACATGGTGTTGGTAAAGACACCAAGTATGAGCGAATGAGATCCATTTGGTTCTCGACAGGGCTGACACAAATAAATTTGCGAAGGAATCCATTCTATCTCCCTATTCTAATGGCTAGTGCTAGAAAACATTTCCTAAGGGCTATTTGGGTTAATCTTCTCTTTGCTTTCTAGAGCATGTTTTCTTTCCTTTTCAAGATTGATTGTAATGGCTACCCTTTTCAGAAAATACAAAGGTAAAGAGGATAGTAGATTATGAAGATGTAAGTGGCACAAACCTGATGCAGATATCTTAA

mRNA sequence

ATGACTGCCGGTGGAATTGAAGCCGTGAAGGTGGCGGCGGAGGTGGCGGTGGAGACGTGGAGAAAGGATTTGGGCGTGGGACTCCTTTTAGGTTTTTTTGTTAAATTGATCTTTTATTATAATCTTGAGTACCGAACTATGGAGGGATTCCCCACGAGATTTCGCAAGCTTGAAGATGAAGAGGACAACCAAGCATGTCCATCCTTGGAGGCCAATGAAACAGCTGCAGTTCACTTCCAGCAATGGGGAGATTGTGATGCGGTCGAGCCAAGCAACACTACAGCCAAACAACCCAGTCTTGACAGCAGGGAAGAGAGGGAAGATAGAGAAGGAAAGAGAGTAGACTTCAACATGGTGTTGGTAAAGACACCAAAAAATACAAAGGTAAAGAGGATAGTAGATTATGAAGATGTAAGTGGCACAAACCTGATGCAGATATCTTAA

Coding sequence (CDS)

ATGACTGCCGGTGGAATTGAAGCCGTGAAGGTGGCGGCGGAGGTGGCGGTGGAGACGTGGAGAAAGGATTTGGGCGTGGGACTCCTTTTAGGTTTTTTTGTTAAATTGATCTTTTATTATAATCTTGAGTACCGAACTATGGAGGGATTCCCCACGAGATTTCGCAAGCTTGAAGATGAAGAGGACAACCAAGCATGTCCATCCTTGGAGGCCAATGAAACAGCTGCAGTTCACTTCCAGCAATGGGGAGATTGTGATGCGGTCGAGCCAAGCAACACTACAGCCAAACAACCCAGTCTTGACAGCAGGGAAGAGAGGGAAGATAGAGAAGGAAAGAGAGTAGACTTCAACATGGTGTTGGTAAAGACACCAAAAAATACAAAGGTAAAGAGGATAGTAGATTATGAAGATGTAAGTGGCACAAACCTGATGCAGATATCTTAA

Protein sequence

MTAGGIEAVKVAAEVAVETWRKDLGVGLLLGFFVKLIFYYNLEYRTMEGFPTRFRKLEDEEDNQACPSLEANETAAVHFQQWGDCDAVEPSNTTAKQPSLDSREEREDREGKRVDFNMVLVKTPKNTKVKRIVDYEDVSGTNLMQIS
Homology
[Close]
BLAST of CmUC09G166220 vs. NCBI nr
Match: XP_022150258.1 (SOSS complex subunit B homolog [Momordica charantia] >XP_022150259.1 SOSS complex subunit B homolog [Momordica charantia] >XP_022150260.1 SOSS complex subunit B homolog [Momordica charantia] >XP_022150261.1 SOSS complex subunit B homolog [Momordica charantia])

HSP 1 Score: 58.9 bits (141), Expect = 4.2e-05
Identity = 41/91 (45.05%), Postives = 52/91 (57.14%), Query Frame = 0 

Query: 56  KLEDEEDNQACPSLEANETAAVHFQQWGD-CDAVEPSNTTAKQPSL--DSREEREDREGK 115
           K   E  N+AC SL A+ETAAVHFQ WGD CDAVEPS+       +   SR     R GK
Sbjct: 26  KTTAEGQNKACLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSRNNLVLRAGK 85

Query: 116 R------VDFNMVLVKTPKNTKVKRIVDYED 138
           R       +FNMV V+TP  ++++ + D  D
Sbjct: 86  RGKIEKVGEFNMVFVETPNMSEIRWVPDTID 116

[Close]
BLAST of CmUC09G166220 vs. NCBI nr
Match: KAE8646322.1 (hypothetical protein Csa_016201 [Cucumis sativus])

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-04
Identity = 38/85 (44.71%), Postives = 48/85 (56.47%), Query Frame = 0 

Query: 55  RKLEDEEDNQACPSLEANETAAVHFQQWGDCDAV------EPSN---TTAKQPSLDSREE 114
           R+ E  +DN+AC S E NETA+VHF     C  V      +  N     AK    +SREE
Sbjct: 10  REGEQFQDNKACLSSEDNETASVHFHGKLGCGRVKRHYPLDEQNMLLQPAKHSDPNSREE 69

Query: 115 REDREGKRVDFNMVLVKTPKNTKVK 131
           REDREG +V+ N+V VKTP  +  K
Sbjct: 70  REDREGNKVEHNIVFVKTPSRSARK 94

[Close]
BLAST of CmUC09G166220 vs. ExPASy TrEMBL
Match: A0A6J1D803 (SOSS complex subunit B homolog OS=Momordica charantia OX=3673 GN=LOC111018468 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.0e-05
Identity = 41/91 (45.05%), Postives = 52/91 (57.14%), Query Frame = 0 

Query: 56  KLEDEEDNQACPSLEANETAAVHFQQWGD-CDAVEPSNTTAKQPSL--DSREEREDREGK 115
           K   E  N+AC SL A+ETAAVHFQ WGD CDAVEPS+       +   SR     R GK
Sbjct: 26  KTTAEGQNKACLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSRNNLVLRAGK 85

Query: 116 R------VDFNMVLVKTPKNTKVKRIVDYED 138
           R       +FNMV V+TP  ++++ + D  D
Sbjct: 86  RGKIEKVGEFNMVFVETPNMSEIRWVPDTID 116

[Close]
BLAST of CmUC09G166220 vs. ExPASy TrEMBL
Match: A0A6J1HAL0 (SOSS complex subunit B homolog OS=Cucurbita moschata OX=3662 GN=LOC111462072 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 8.5e-04
Identity = 33/85 (38.82%), Postives = 49/85 (57.65%), Query Frame = 0 

Query: 60  EEDNQACPSLEANETAAVHFQQWG-DCDAVEPSN---------TTAKQPSLDSREEREDR 119
           E  N+ C SL A+ETAAVHFQ WG +CD VEPS+         + ++  +L  R  +  +
Sbjct: 31  EGQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGK 90

Query: 120 EGKRVDFNMVLVKTPKNTKVKRIVD 135
             K  +FNMV V+TP  +++  + D
Sbjct: 91  IEKVGEFNMVFVETPNMSEIHWVPD 115

The following BLAST results are available for this feature:
BLAST of CmUC09G166220 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022150258.14.2e-0545.05SOSS complex subunit B homolog [Momordica charantia] >XP_022150259.1 SOSS comple... [more]
KAE8646322.11.6e-0444.71hypothetical protein Csa_016201 [Cucumis sativus][more]
BLAST of CmUC09G166220 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC09G166220 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D8032.0e-0545.05SOSS complex subunit B homolog OS=Momordica charantia OX=3673 GN=LOC111018468 PE... [more]
A0A6J1HAL08.5e-0438.82SOSS complex subunit B homolog OS=Cucurbita moschata OX=3662 GN=LOC111462072 PE=... [more]
BLAST of CmUC09G166220 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..111

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC09G166220.1CmUC09G166220.1mRNA