CmUC09G165940 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC09G165940
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Unknown protein
Location	CmU531Chr09: 5187792 .. 5188196 (+)
RNA-Seq Expression	CmUC09G165940
Synteny	CmUC09G165940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCACTAAATCCCTACTTTTAATACCTCTCCTCATTCTTCTGTTGTTCTCCAAATTCTTAAGCACTTCCACCACCGATCACGGCGGCGAGGCTCCAAATTCTCTAACCGAAACGTTTCACCGGAACATTTTCCACACTGCGGCTCATCCGATTGCAAAGAACAATGGCGAATCCTCCCTGAAAGAGAATATGAATAATGCTCTTGTCAAAAAGCGGACCCGACCTTTACCCTTACCTTTACCTATTGGTCGAAGCCGAGGTCACAATCGTAATTGTACCTCAACAACGAAGAATCAAACCCGAAGCCATAACCGTAACTGTACGTCCATAGCAAATCAAAATCGAGGGACGCCATTTGGCATTGGATCCATCATCCTCCTCTTGGGATTAGTTCTGTGA

mRNA sequence

ATGGCTTCCACTAAATCCCTACTTTTAATACCTCTCCTCATTCTTCTGTTGTTCTCCAAATTCTTAAGCACTTCCACCACCGATCACGGCGGCGAGGCTCCAAATTCTCTAACCGAAACGTTTCACCGGAACATTTTCCACACTGCGGCTCATCCGATTGCAAAGAACAATGGCGAATCCTCCCTGAAAGAGAATATGAATAATGCTCTTGTCAAAAAGCGGACCCGACCTTTACCCTTACCTTTACCTATTGGTCGAAGCCGAGGTCACAATCGTAATTGTACCTCAACAACGAAGAATCAAACCCGAAGCCATAACCGTAACTGTACGTCCATAGCAAATCAAAATCGAGGGACGCCATTTGGCATTGGATCCATCATCCTCCTCTTGGGATTAGTTCTGTGA

Coding sequence (CDS)

ATGGCTTCCACTAAATCCCTACTTTTAATACCTCTCCTCATTCTTCTGTTGTTCTCCAAATTCTTAAGCACTTCCACCACCGATCACGGCGGCGAGGCTCCAAATTCTCTAACCGAAACGTTTCACCGGAACATTTTCCACACTGCGGCTCATCCGATTGCAAAGAACAATGGCGAATCCTCCCTGAAAGAGAATATGAATAATGCTCTTGTCAAAAAGCGGACCCGACCTTTACCCTTACCTTTACCTATTGGTCGAAGCCGAGGTCACAATCGTAATTGTACCTCAACAACGAAGAATCAAACCCGAAGCCATAACCGTAACTGTACGTCCATAGCAAATCAAAATCGAGGGACGCCATTTGGCATTGGATCCATCATCCTCCTCTTGGGATTAGTTCTGTGA

Protein sequence

MASTKSLLLIPLLILLLFSKFLSTSTTDHGGEAPNSLTETFHRNIFHTAAHPIAKNNGESSLKENMNNALVKKRTRPLPLPLPIGRSRGHNRNCTSTTKNQTRSHNRNCTSIANQNRGTPFGIGSIILLLGLVL

Homology

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BLAST of CmUC09G165940 vs. NCBI nr
Match: KAG6575859.1 (hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014393.1 hypothetical protein SDJN02_24570, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 65.9 bits (159), Expect = 3.1e-07
Identity = 52/134 (38.81%), Postives = 72/134 (53.73%), Query Frame = 0


Query: 1   MASTKSLLLIPLLILLLFSKFLSTSTTDHGGEAPNSLTETFHRNIFHTAAHPIAKNNGES 60
           MA+ KSL+ + LL LLLFS+ L+ S  D  G++ NSLT    RN+  TAAH IA N+ ES
Sbjct: 1   MAALKSLVSVALLALLLFSESLTASAVDRSGDS-NSLTGMLRRNVLQTAAHQIADNSVES 60

Query: 61  SLKENMNNALVKKRTRPLPLPLPIGRSRGHNRNCTSTTKNQTRSHNRNCTSIANQNRGTP 120
           S +  M N  +K+R RP+                       TRS      S AN++R   
Sbjct: 61  SPERKM-NVHIKRRMRPV--------------------ATGTRS------SAANRSRIAS 106

Query: 121 FGIGSIILLLGLVL 135
            G+GS++++LGL L
Sbjct: 121 IGVGSVLVVLGLFL 106

The following BLAST results are available for this feature:

BLAST of CmUC09G165940 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575859.1	3.1e-07	38.81	hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmUC09G165940 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC09G165940 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC09G165940 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC09G165940.1	CmUC09G165940.1	mRNA