CmUC09G164650 (gene) Watermelon (USVL531) v1

Overview
NameCmUC09G164650
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionTranscription factor UPBEAT1
LocationCmU531Chr09: 4142036 .. 4143516 (-)
RNA-Seq ExpressionCmUC09G164650
SyntenyCmUC09G164650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGTGGTGGTGGTGGTGAGAAAATCATGTGGTTGCATGTGCTTTGAGTTGGACAACATGCCCTAAAGCTAAACCGCCACCATTCTTAGCGTACACTTAATTCCTTCTCTCCTTTTTTTTTTTTTCTCTCTCTCTCTCCATTTTTTCTCTTTTCGCTATTTTGACACGTGGCTACCTCTTCCTAGATGTTAAATTAATATTGTTCAATGAAAGATCGTTAATTACAATGTGACTGTCTCATAATAATCGTGAGAATACAGTACTCTCTGATAACTAGTAGATATAAATTTGAGATACTTCTCTCTCATACATTCGACGGTGAAAAACTATTAGCCACGTTATGTTTAGCAAACCTAATTGAATAATTTTAGTTTAATTTGAGTAATTTCCTCTATGTAATCATTTGATGTAATTATATAGTCCCAATGGATACTACGTGGAAAGTAAGTTTAAGTTAATGGATTATGATAAATTTAGTATCATACATCCAAGAGCATCTATAATGTAGTTATAATTATCTCCTCTTTGTTACCATCAAATGCAAGGTTGAACTTTAAGCTAATAGTTTTACATTCAACATTATAAAATAATAATCACCAATCTCATTATCCCAATTTCTTCTAAATCATTTTTTCTTAAAAAATTTACAATGCAAATATTTGCAGTCCGAACAATTTTTTATACTACTTTCATTAATTTAATTAATATCAGAAAACAAAACATGTAAATTAATAAAATAAAATAATATATCATTAAATGACATGTCAAGAATGTAGAGTACCAAAATTTTCTCATTTGTTCCTCTTTCTTAGCTCCTTCTCTTTTCTTTTTCTTTTTTTTTTTTTCAATTTTTTTTCCAACTTATCATCTCTTTCCTCACCAACCCATTTCATAAATTCCTCCATATAAAACCCTCTAACCCCCATTGCCTTCATCCAAAATCCCAAATCCCAAACTCCATTTTCCCTTCTCTCTTTCTCTATTTTCCTCACCACAAAGAAAAAGAGAAACAAAACCAAATGGGAGTTTCCCAAGAAACCCTTTTGCAAATTCAACTCAACATGGAAGATCAAAAAACACAAGATCGCATCATCCTTAAAGAGAGGAACAACTCAAATGGATCCATATGGAAGAAAACATTATCAAAGGAAGAAGAAAAAGAAGAAGAAGAAAATGGCAAACGCAAAGCCAAAAGTTGCAATAGCACAAGAAGAAGAAGAAGATCAAGAAGCAACTCATTGATATTGAAGAAGAGAAGAAGATCATCATCAGATAGAATAGAGCACAGGGTCAACACTTTGAGAAACCTTGTACCAAACATGAACAACCACGACGATGATGACGAAAGCTGTGTCGGATCATTAGAACAGCTTTTCACTCAGACGGCTGATTATATATTGTCGTTACAAACAAGAGTCAGATTGATGAAGACTTTGGTTGATGTCTTGTCTGGTCCTTCTTCTTCTATTGATGAGTGA

mRNA sequence

ATGGTGGTGGTGGTGGTGGTGAGAAAATCATGTGGTTGCATTCCCAATGGATACTACGTGGAAAAAAAAGAGAAACAAAACCAAATGGGAGTTTCCCAAGAAACCCTTTTGCAAATTCAACTCAACATGGAAGATCAAAAAACACAAGATCGCATCATCCTTAAAGAGAGGAACAACTCAAATGGATCCATATGGAAGAAAACATTATCAAAGGAAGAAGAAAAAGAAGAAGAAGAAAATGGCAAACGCAAAGCCAAAAGTTGCAATAGCACAAGAAGAAGAAGAAGATCAAGAAGCAACTCATTGATATTGAAGAAGAGAAGAAGATCATCATCAGATAGAATAGAGCACAGGGTCAACACTTTGAGAAACCTTGTACCAAACATGAACAACCACGACGATGATGACGAAAGCTGTGTCGGATCATTAGAACAGCTTTTCACTCAGACGGCTGATTATATATTGTCGTTACAAACAAGAGTCAGATTGATGAAGACTTTGGTTGATGTCTTGTCTGGTCCTTCTTCTTCTATTGATGAGTGA

Coding sequence (CDS)

ATGGTGGTGGTGGTGGTGGTGAGAAAATCATGTGGTTGCATTCCCAATGGATACTACGTGGAAAAAAAAGAGAAACAAAACCAAATGGGAGTTTCCCAAGAAACCCTTTTGCAAATTCAACTCAACATGGAAGATCAAAAAACACAAGATCGCATCATCCTTAAAGAGAGGAACAACTCAAATGGATCCATATGGAAGAAAACATTATCAAAGGAAGAAGAAAAAGAAGAAGAAGAAAATGGCAAACGCAAAGCCAAAAGTTGCAATAGCACAAGAAGAAGAAGAAGATCAAGAAGCAACTCATTGATATTGAAGAAGAGAAGAAGATCATCATCAGATAGAATAGAGCACAGGGTCAACACTTTGAGAAACCTTGTACCAAACATGAACAACCACGACGATGATGACGAAAGCTGTGTCGGATCATTAGAACAGCTTTTCACTCAGACGGCTGATTATATATTGTCGTTACAAACAAGAGTCAGATTGATGAAGACTTTGGTTGATGTCTTGTCTGGTCCTTCTTCTTCTATTGATGAGTGA

Protein sequence

MVVVVVVRKSCGCIPNGYYVEKKEKQNQMGVSQETLLQIQLNMEDQKTQDRIILKERNNSNGSIWKKTLSKEEEKEEEENGKRKAKSCNSTRRRRRSRSNSLILKKRRRSSSDRIEHRVNTLRNLVPNMNNHDDDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSIDE
Homology
BLAST of CmUC09G164650 vs. NCBI nr
Match: XP_031744332.1 (transcription factor UPBEAT1 [Cucumis sativus] >KGN45028.1 hypothetical protein Csa_016025 [Cucumis sativus])

HSP 1 Score: 176.8 bits (447), Expect = 1.7e-40
Identity = 120/167 (71.86%), Postives = 130/167 (77.84%), Query Frame = 0

Query: 29  MGVSQETLLQIQLNMED-QKTQDRII----LKERNNSNGSIWKKTLSKEEEKEE-EENGK 88
           MGVSQETLLQIQLNMED Q TQDRII    ++  N+++ S WKK   KEEE +E    GK
Sbjct: 1   MGVSQETLLQIQLNMEDHQTTQDRIIDIKEIRNNNSNDQSTWKKNSMKEEEVQEINSKGK 60

Query: 89  RKAKSCN-STRR--RRRSRSNSLILKKRRR----SSSDRIEHRVNTLRNLVPN--MNNHD 148
               +CN +TRR  RRRSRSNSLILKKR R    SSS RIE RVNTLR+LVPN   +NHD
Sbjct: 61  DDKSTCNINTRRTTRRRSRSNSLILKKRSRRSSSSSSSRIEQRVNTLRSLVPNNDNHNHD 120

Query: 149 DDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSIDE 181
           D DESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLS PSSSIDE
Sbjct: 121 DQDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE 167

BLAST of CmUC09G164650 vs. NCBI nr
Match: KAA0046707.1 (transcription factor UPBEAT1 [Cucumis melo var. makuwa] >TYK18243.1 transcription factor UPBEAT1 [Cucumis melo var. makuwa])

HSP 1 Score: 174.1 bits (440), Expect = 1.1e-39
Identity = 127/172 (73.84%), Postives = 134/172 (77.91%), Query Frame = 0

Query: 29  MGVSQETLLQIQLNMEDQK-TQDR-IILKE-RNNSNG--SIWKKTLSKEEEKEEEE---N 88
           MGVSQETLLQIQLNMED K TQDR II+KE RN+S+   SIWKK   KEE  EEE+   N
Sbjct: 1   MGVSQETLLQIQLNMEDHKTTQDRIIIIKEIRNDSSNDQSIWKKKSMKEEVGEEEDQEIN 60

Query: 89  GKRKAKS-CN--STRR--RRRSRSNSLILKKRRR------SSSDRIEHRVNTLRNLVPNM 148
            K K KS CN  +TRR  RRRSRSNSLILKKR R      SS+ RIE RVN LRNLVPN 
Sbjct: 61  SKGKDKSTCNNINTRRTTRRRSRSNSLILKKRSRRSSSSSSSTSRIEQRVNILRNLVPNN 120

Query: 149 NNHDDDDESC-VGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSIDE 181
           +NH DDDESC  GSLEQLFTQTADYILSLQTRVRLMKTLVDVLS PSSSIDE
Sbjct: 121 DNHQDDDESCTAGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE 172

BLAST of CmUC09G164650 vs. NCBI nr
Match: KAG6593250.1 (Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123.6 bits (309), Expect = 1.7e-24
Identity = 82/148 (55.41%), Postives = 105/148 (70.95%), Query Frame = 0

Query: 29  MGVSQETLLQIQLNMEDQKTQDRIILKERNNSNGSIWKKTLSKEEEKEEEENGKRKAKSC 88
           MGV  ETLL +QLNM+ + +QD   ++E              ++E++E++E  +  AKS 
Sbjct: 1   MGVYPETLLLVQLNMK-EPSQDETSMEE--------------QQEQQEQQEQQEAIAKSF 60

Query: 89  NSTRRRRRSRSNSLILKKRRRSSSDRIEHRVNTLRNLVPNMNNHDDDDESCVGSLEQLFT 148
           N     RR RS++ ++KKRR  SS RIE RV+TLRNLVPNMNN++++ ESCVGSLEQLFT
Sbjct: 61  N-----RRRRSSNSLMKKRRSRSSTRIEQRVSTLRNLVPNMNNNNNNHESCVGSLEQLFT 120

Query: 149 QTADYILSLQTRVRLMKTLVDVLSGPSS 177
           QTADYILSLQTRVR MK LVDVLS  S+
Sbjct: 121 QTADYILSLQTRVRFMKNLVDVLSASSN 128

BLAST of CmUC09G164650 vs. NCBI nr
Match: KAG7025601.1 (Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 118.2 bits (295), Expect = 7.1e-23
Identity = 82/148 (55.41%), Postives = 103/148 (69.59%), Query Frame = 0

Query: 29  MGVSQETLLQIQLNMEDQKTQDRIILKERNNSNGSIWKKTLSKEEEKEEEENGKRKAKSC 88
           MGV  ETLL +QLNM+ + +QD                +T  +E+++E++E     AKS 
Sbjct: 1   MGVYPETLLLVQLNMK-EPSQD----------------ETSMEEQQQEQQE---AIAKSF 60

Query: 89  NSTRRRRRSRSNSLILKKRRRSSSDRIEHRVNTLRNLVPNMNNHDDDDESCVGSLEQLFT 148
           N     RR RS++ ++KKRR  SS RIE RV+TLRNLVPNMNN++++ ESCVGSLEQLFT
Sbjct: 61  N-----RRRRSSNSLMKKRRSRSSTRIEQRVSTLRNLVPNMNNNNNNHESCVGSLEQLFT 120

Query: 149 QTADYILSLQTRVRLMKTLVDVLSGPSS 177
           QTADYILSLQTRVR MK LVDVLS  S+
Sbjct: 121 QTADYILSLQTRVRFMKNLVDVLSASSN 123

BLAST of CmUC09G164650 vs. NCBI nr
Match: KAG6575752.1 (Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115.2 bits (287), Expect = 6.0e-22
Identity = 88/150 (58.67%), Postives = 100/150 (66.67%), Query Frame = 0

Query: 29  MGVSQETLLQIQLNMEDQKTQDRIILKERNNSNGSIWKKTLSKEEEKEEEENGKRKAKSC 88
           MG    TLL +QLNME + TQD II       NGSI KK+  +EE+K          KSC
Sbjct: 1   MGAFPNTLLLLQLNME-EPTQDIII-------NGSILKKSSMEEEQKNN--------KSC 60

Query: 89  NSTRRRRRSRSNSLILKKRRRSSSDRIEHRVNTLRNLVPNMNNHDDDDESCVGSLEQLFT 148
              RRRR S+S    L K+ R SS RI  RV TLRNLVPNMNN D+D+++  GSLEQLFT
Sbjct: 61  R--RRRRTSKS----LAKKTRRSSTRIVQRVTTLRNLVPNMNN-DNDNDNNDGSLEQLFT 120

Query: 149 QTADYILSLQTRVRLMKTLVDVLSGPSSSI 179
            TADYILSLQTRVR M+TLVDVLSG SS I
Sbjct: 121 HTADYILSLQTRVRFMRTLVDVLSGSSSRI 127

BLAST of CmUC09G164650 vs. ExPASy TrEMBL
Match: A0A0A0K6D9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G407810 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 8.2e-41
Identity = 120/167 (71.86%), Postives = 130/167 (77.84%), Query Frame = 0

Query: 29  MGVSQETLLQIQLNMED-QKTQDRII----LKERNNSNGSIWKKTLSKEEEKEE-EENGK 88
           MGVSQETLLQIQLNMED Q TQDRII    ++  N+++ S WKK   KEEE +E    GK
Sbjct: 1   MGVSQETLLQIQLNMEDHQTTQDRIIDIKEIRNNNSNDQSTWKKNSMKEEEVQEINSKGK 60

Query: 89  RKAKSCN-STRR--RRRSRSNSLILKKRRR----SSSDRIEHRVNTLRNLVPN--MNNHD 148
               +CN +TRR  RRRSRSNSLILKKR R    SSS RIE RVNTLR+LVPN   +NHD
Sbjct: 61  DDKSTCNINTRRTTRRRSRSNSLILKKRSRRSSSSSSSRIEQRVNTLRSLVPNNDNHNHD 120

Query: 149 DDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSIDE 181
           D DESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLS PSSSIDE
Sbjct: 121 DQDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE 167

BLAST of CmUC09G164650 vs. ExPASy TrEMBL
Match: A0A5A7TXU1 (Transcription factor UPBEAT1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001830 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 5.3e-40
Identity = 127/172 (73.84%), Postives = 134/172 (77.91%), Query Frame = 0

Query: 29  MGVSQETLLQIQLNMEDQK-TQDR-IILKE-RNNSNG--SIWKKTLSKEEEKEEEE---N 88
           MGVSQETLLQIQLNMED K TQDR II+KE RN+S+   SIWKK   KEE  EEE+   N
Sbjct: 1   MGVSQETLLQIQLNMEDHKTTQDRIIIIKEIRNDSSNDQSIWKKKSMKEEVGEEEDQEIN 60

Query: 89  GKRKAKS-CN--STRR--RRRSRSNSLILKKRRR------SSSDRIEHRVNTLRNLVPNM 148
            K K KS CN  +TRR  RRRSRSNSLILKKR R      SS+ RIE RVN LRNLVPN 
Sbjct: 61  SKGKDKSTCNNINTRRTTRRRSRSNSLILKKRSRRSSSSSSSTSRIEQRVNILRNLVPNN 120

Query: 149 NNHDDDDESC-VGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSIDE 181
           +NH DDDESC  GSLEQLFTQTADYILSLQTRVRLMKTLVDVLS PSSSIDE
Sbjct: 121 DNHQDDDESCTAGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE 172

BLAST of CmUC09G164650 vs. ExPASy TrEMBL
Match: A0A6P6GHL9 (transcription factor UPBEAT1 OS=Ziziphus jujuba OX=326968 GN=LOC112492978 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-05
Identity = 65/157 (41.40%), Postives = 82/157 (52.23%), Query Frame = 0

Query: 29  MGVSQETLLQ-IQLNMEDQKTQDRIILKERNNSNGSIWKKTLSKEEEKEEEENGKRKAKS 88
           MG+SQ +LLQ   L    QK +      ++ NSNGS+W K L        E   KR+ + 
Sbjct: 1   MGLSQYSLLQPFDLEGVIQKNE------KKCNSNGSLWSKVL--------EARAKRRCQL 60

Query: 89  CNSTRRRR------RSRSNSLILKKR------RRSSSDRIEHRVNTLRNLVPNMNNHDDD 148
               R  R      RSR++  IL KR       R  S  IE RV TL+ LVPN       
Sbjct: 61  ATKQRMSRKNMHVMRSRTSRRILMKRTARGGGSRWPSKGIEGRVKTLKKLVPN------- 120

Query: 149 DESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLS 173
            ES VG L+ LF +TADYILSLQ RVR+M+ +V VL+
Sbjct: 121 TESSVG-LDGLFRETADYILSLQMRVRVMQIMVKVLT 135

BLAST of CmUC09G164650 vs. ExPASy TrEMBL
Match: A0A445F6P8 (Transcription factor UPBEAT1 OS=Glycine soja OX=3848 GN=D0Y65_054414 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.2e-05
Identity = 54/150 (36.00%), Postives = 82/150 (54.67%), Query Frame = 0

Query: 29  MGVSQETLLQIQLNMED--QKTQDRIILKERNNSNGSIWKKTLSKEEEKEEEENGKRKAK 88
           MG+S +T L +  +++D  Q T++     + ++S G +W K L+ +            AK
Sbjct: 1   MGISSQTSL-VSFSLKDLIQGTEE----NKTSSSYGCLWSKVLTAQ------------AK 60

Query: 89  SCNSTRRRRRSRSNSLILKKR---RRSSSDRIEHRVNTLRNLVPNMNNHDDDDESCVGSL 148
               T+R  R     L++ +R   RR S + I  RV TL++LVPN ++           L
Sbjct: 61  KVKGTKRSVRRPRRILMMNRRSGSRRGSYNGIRRRVRTLKSLVPNSDSL---------GL 120

Query: 149 EQLFTQTADYILSLQTRVRLMKTLVDVLSG 174
           + LF QTADYILSLQTRVR+M+ +V VL+G
Sbjct: 121 DGLFRQTADYILSLQTRVRVMQVMVKVLTG 124

BLAST of CmUC09G164650 vs. ExPASy TrEMBL
Match: W9QCV4 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_009723 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.2e-05
Identity = 57/157 (36.31%), Postives = 81/157 (51.59%), Query Frame = 0

Query: 29  MGVSQETLLQIQLNMEDQKTQDRIIL---KERNNSN----GSIWKKTLSKEEEKEEEENG 88
           MG+SQ +LL++ L   D+   + II     +  NSN     S+W + L            
Sbjct: 1   MGISQYSLLEVPL---DELKSNSIIQGNEDQHGNSNIIGSSSLWNQRL------------ 60

Query: 89  KRKAKSCNSTRRRRRSRSNSLILKKRRRSSSDR-----IEHRVNTLRNLVPNMNNHDDDD 148
           KR+  S +S     RS+    I+ KRRR  + R     +  RV TL+ L+PN  +     
Sbjct: 61  KRRVVSRSSVHMTPRSKRPKRIVMKRRRLGASRRRANGVVRRVRTLKRLIPNSES----- 120

Query: 149 ESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSG 174
              VG+L+ LF +TADYIL LQ RVR+M+ +V VLSG
Sbjct: 121 ---VGTLDGLFRETADYILCLQMRVRVMQIVVKVLSG 134

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_031744332.11.7e-4071.86transcription factor UPBEAT1 [Cucumis sativus] >KGN45028.1 hypothetical protein ... [more]
KAA0046707.11.1e-3973.84transcription factor UPBEAT1 [Cucumis melo var. makuwa] >TYK18243.1 transcriptio... [more]
KAG6593250.11.7e-2455.41Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7025601.17.1e-2355.41Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. argyrosperm... [more]
KAG6575752.16.0e-2258.67Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K6D98.2e-4171.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G407810 PE=4 SV=1[more]
A0A5A7TXU15.3e-4073.84Transcription factor UPBEAT1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A6P6GHL91.9e-0541.40transcription factor UPBEAT1 OS=Ziziphus jujuba OX=326968 GN=LOC112492978 PE=4 S... [more]
A0A445F6P84.2e-0536.00Transcription factor UPBEAT1 OS=Glycine soja OX=3848 GN=D0Y65_054414 PE=4 SV=1[more]
W9QCV44.2e-0536.31Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_009723 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..86
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 65..114
NoneNo IPR availablePANTHERPTHR33124:SF39TRANSCRIPTION FACTOR UPBEAT1coord: 40..173
IPR044660Transcription factor IBH1-likePANTHERPTHR33124TRANSCRIPTION FACTOR IBH1-LIKE 1coord: 40..173
IPR044549Transcription factor IBH1-like, bHLH domainCDDcd11444bHLH_AtIBH1_likecoord: 104..168
e-value: 8.45146E-12
score: 55.7064

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC09G164650.1CmUC09G164650.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated