CmUC09G164560 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC09G164560
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	DNA-directed RNA polymerase III subunit RPC8
Location	CmU531Chr09: 4043346 .. 4049954 (+)
RNA-Seq Expression	CmUC09G164560
Synteny	CmUC09G164560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACATTTTTATCTTCCTCTCTCTCTTCACACGTGCTCCACCTCCCCCCTCTCACTTTTCAGCTTCACTGCCGGCTCCCTCTCTTCTCCGCCGCCGCCGTATTTATCCGTTCCGTATCGCCGCGCCGCCTCCTTCGTAGCCGGCGTGTACTGGATATTTGACTCTATTGTTACCGGTATCCTCCCAAATTCCATCTATCTGTTTCCCTCTTCCTTTCTCTCTTTCTCTCTCTCTGGCTCTCACCAGCAGTCATCGAATCAGCCCCCGACTGCAAAAGACCTCTTTTTCAGGCATTACCTCACGCTCCTTCTCTCTATGATTCTTTCTCTCAAAACCCATCTTATTCTTCCTCAAAATTTTAGTCTTTAGAACACCCCCCATTTCCAAGTACGAAATCATTTGTCTTTTGGGTTTTGAAGAAAGAGGGAGAGAAGAACTAGCGACTGAATTCGAAGAATCTTCAAAATTCCTGGGTTTCTTCAATCTTTGGATTTGATTTCTGTCTTCTTTAACGGTAAGATTCACCACTGTTTTTATACTTGGGCATGAACTCTCTGTTTTTGTTGAATTGATCCGCCTGTTTTTCTGTTTGTACATTACTTGGTTCTCATTTGATTTATTTATGTGTCATTTTGTTTGAAGTTTTAAGTAATTGCTTGCTTTCTCGTCTCTCTTGTTTTTCCCTTCTGCCGTTTGATACATTTAGCTCTTTGAGTTTCTGCAATTGTAATTATTTGGATTTAGTTCTTGTGGGATAATTTTGTTTCTGTTTTATACCTTAGGTGGTGTGGATTGAAGTTTTCCTTTCCCATACCCATTTATGCCTTGCTCCAAATTTGTAGTGCTTTACATTGTTCCCCTTTGATGTTCTGCATTGGTTTCCTTTATTCAGAGCCTCAAGGATTGTGTTTTCGTTGGAACTATTAGCCTATAGAGAACATCCAGATGTTCTATCTTAGCCGAATTGAGCACACACTACGTGTGCCTCCAAGCTTGCTTCATCTACCTATCCTTGATGCTATTAAGGGCGAGCTGGAGAAACTATTCTTAGATAAGGTTCGTGTAAATTTTGTATATAAACTTGTTGAGTAACCCTCTTCAATTTAGTGCCCTGGGATCAACACTTATAATGAGATGAGCTTTGTCATGAAGGTGGTTGCAAACTTGGGGCTCTGTATTTCCGTTTATGATATAAGATCGGTCGATGGGGGCTTTATCTTTCCAAGCGATGGTGCTGCAACATACAAGGTATTCTTGCATTGTTGCATTCATCTTTAAAGATTGAACCATTACATTGAAGTCTTTTTTGTTACATGGTGTCCGTGCATTTATGATATAATTCTATTTTTGGTAGGTTCAAAAGGGTCGTGGGTTTAATAAAAAACTTAGAGTGAATAGGTTTAATCTATGGTAACCACTTACCTAGGATATAATTTGCTAGGAGTTTTATTGACTCGTAAATGTTGTTGGGTTAAAGAGGTTGTCCTTGAGATTAGTCGAGATGCGCGTAAGTCGTAAGCTAGTTCTAACACTCACAGATAACAAAATAAATTATAATTTTGGTATCTAACACATAAGGTGTACTTCAATTACCAAGTACAAAAGGAATATCCATTTTTCAAAATCACATAATTTAAACTTTGGCCTCTTCTTTATCCATCAATTTTATGAACTATATTTGTCTTTTCAGTATTTTTGTCAATTGAAAACATAGGATTTTGTCAAAACTACATCAGGGTTACTTATTCATTGGAAATATGAGATCCTGAGTTTTATTTGTGGATGTTTTGGCATGTTTTGGCAGGTTGTGTTCACATTGATTGTGTTTCGTCCATACGTGGGGGAGGTAATTATTGGAAAAGTTAAAGAATCAGATGAAAATGGTTTGCGAAGTATGTTAATTTCTTTGTTTTTTCAAACTTTCTTTCAGAATGTATATTTCTCCGTCAAGAATTGTTTTCCTTTGATTTGAGTGTCTTAGTCTAACACTTTGAACTAGGTGAGTAAGCGGTTTGGTTAGGCTCGGTTTTAGTAGAAAACCAAAACCAAACCAATTAATTGGTGAAAGAAACAAAGCAATCGAAACTGAATCAGGTTCGTTAAGAATTCGAGCCAACCAAACCGCTTAGACCAGGTGTCTAGTCGGCTCATCCCTTGGTTCACCAAATACACAACATGTTGTGTGCGCACGAGAATGATCGAGGAACGAAAATAAATTGCAACACCTTTTTCCTGAAATAAGAAGGAAATGTTGCACTTCCCCAAATTCGAACATGCATCCTCATTGTATATACTTTATCGAGCGGCTCGTTTTTTCAATAGGTTTTTTTTCTTCTAACTCGAAAGTGACCGAAAATTTTCGGTTTTTAATATTTTCAACTTGAAGCCGCCAAACCAATCGGCTTCATCTCGAATCGACGAGCGATTTCAGTCGGTTCAAGCAATTTTACGATTTCTCCTTGCACCCCTACTTTGAATCTTATCACATTTTTCTTCCTATTAAGTGTATGTTTAAGATTAGTCCTTCTGTATAAGTCTTTCAAGGCATTTGGTTCATTAGTGATTAGCTTAAGAGCTCTAGCATTGATTTCCTAATGAGTTGTTGTTTTGCTGATTGATACAACGGTCTAGATCTATATTCTCAATTCTTGGCAATGGGTTATTATGTCCTTTCCTTTTCAATTAATTTCCTTAGTTGAAATTTCTCTTGTATTATAAGTACCCATTATTGGGTCCTTTTGAAAAATAAGAAAAAATACAATATTTCTCCAAAACTACATGGTATAGAGCAAAACCCTAATGGTTTTGAAACCTTAGCCTCCACTTGCAGTTCATCACCAGACAGCGTCAAAGTGCCGCCATTCATCATCTCTTCCACCCTCCATCAAGGTTTGTCTCAAAAGTCATTGCTTGGGTCAGAGCTCTGCGTTAAAGTTTCTTCTCGTTGCCGTCTGGGTCAGAACTTGCTGTTGTGGGTTTATTTTGTTGTTGGCCCAAGCTGCAAATCACAGTGGAAAGAAAAAATTCTTAAGATATAACCTAACCCTAGTCTAGTCGTCGTCGGCCGCCGTCCAGACCACTTGCGCTACGAGATTTGGCTCCGTTCATGGATTTCGTTTTTTATTTTTGCTCGTGGGTTTCAGTTGTAGACCCGTAGACACCTCAGCCTGAAGATTGTGAAGCCACGATCTCTCATGTCGTCTCAGCAATCGTTCATGGAGTCAATTAGGTTCACATTGGTTTAGCTAGATCGGTTCAATTAGGCCACGAGTAGTTCAATCAGACTGGTTCAATCAGATCTGATTTCAAATCTACTCGTGGTGATATTGCGCTGTTCGCGGGCACCTTTTTTTTTTTTTTTTTCAATTTCATTAGTTGAGTCGGTCAATCTCAATTAGTCAGTCTCTCCTATCATGTCAAAGCAGACAGTTACATTATCTACAAGTTTTGCTCATCAGGACATTGACTTTCCTTGCTTCTCTGTACAACACAATAAACAAAAATTGTTGATTGTGGATTCATGAGCAATCTCATGACTGGTGACATCAGTATTTTCCATCAGTTTAAATCACACCCTGGTCATTCGTCCATTCAAATAGTAGATGGCTCTCTATCTGAAGTAACAGGAACAGGGTCGATAAAATTACCAAATGATCTCTTACTCTCCAATGTTCTTTATGTTCCTAAATTAAATTGTAACTTGATGTCAATAAGCAAACTTACGAGTGACTTGAATTGTGTATCTAAATTTCATTTGAACTTGTGTGAATTTCAGGAGTTGGGTTTGGGAAAGGTGATTGGCATTGCTAAGTAGCAAGATGGCCTCTATCTTTTTCAAGGAAGACATCTTCCAAGCTCGTCTTTCAACCCCATGTGTGAGTCTTCATCTAACTTCGTTAGTTTCATTCTTGAGTACTCTTTTTGTTAGGTCTTTATCTAGTGAAAATCAAAGTTATGTTATGGCACTTTCACCTCGGACATCCAAATTTTTTGTATCTTGAAAGGTTGTTTCCTCATCTGTTCATTAAGAAAGAACCGAATCACTTTCACTACAAGATTTGTCAACTCTCCAACATACCAGAAATCCTATCCAAGTGTGCCCTACAAATCTTCAAAACTTTTTGCATTGATCCACAATGATATTTGGGGCCTCTAGAATCAAAAATATATCTAGAGCACGTTGTTTCATAACTTTTATTGATGACCATACTAGACTGATATGGACATTCCTCATGAAGGACAAATCTGGAACATCAAGTTTTTTTCAATCTGTTCACTCAATGATCTCCACAAGTCTTCGAAACAGATAATGCTCGAGACTATTTCAATTCAATTCTTGGGTCATTTCTTTCATCTCATGTATAGTTCACACTAGTTCATGTTTGGACACTCAACAAAATGGGATTGCTGCAAGGAAAAATAGTCACCTTCTTGAGGTCACTCGTTCTCTTATGATTGCCAGTAATGTTCCTAATTTGTTTTGGGGAGAAGCCCTTCTTACAGCAACTTCTCTCATAAATCGAATGCCTAGTCGATCCTCAAATTCCAATATCCTCGAGATGTCTTCCTCCAAATTCATTCCCAACTACAAAACTTTTCTTCAAATTTACCCTTTCTAATTAATTTCCTTAGTTGGAATTTCTCTTGTATCATAATTACCCATTATTGGGCCTTTTGAAAAATAAGAAAAAATACAATATTTCTCCAAAACTACAGTAATGTTAATGTTACTGCCTCCGAATGCTGGTGGTTAATTGCATAAAGGGGAATTCATACTTATACCATTCTTATAAGAACTTATATATTTATACATATATACACAAGTACTTTGTTAGGTTTTTATGTTGATCCATAACATGCTTGAAAATTTGGTTTGGGTTTATGTCAGCTTGGATATTTAGATTTGGGTCAATTCTTTTGAAGTCTTTAGGAGTAACCTTAATCTTTTCATTTCTTGCTTTATAAACACAACATATGACAAATTTAGCATGGTGGTGATGGATGTTTGCTGATTTTGCAGTATCACTTGGATTTTTCGAGGACATTCATGTTCCTGTCCATCTTTTGCCCTCAAAATCTGAATTCACGCCAGACCCAAATAATGGGTAATGCCATCTCTGCAGCTCACAACCACCAACTAAAATTATAAATGGTGTTTTTGTTGAATGATAATTTTTATTGTTGATTTATCTAAAGTATTATCTGTGACTATTCTTTTTGCGAGGATTGCAGTGGAAAACTCAGATGGGTGTGGGACTATGAAGGTGTACCGTGCGACATATATGAAACTGATGAGGTTTGTCAATTATGATAGGCTTAAATCCAGTGTTAGTCCTTAAATTTTATACTTATTTCATTTGGATCCTTCAACTTTGAAATGTTCTGTTTTTGAACTTTGCAAAAGACCTACTCAATTTCTCTCTTTTTGAGAGCTTGGTAGTTTTAAGAATCTAAATACAATAAGCACAAATATGAAGGGAAATAGTATGTGATGTATATTGTTGTGTAGTGATAATGTTGCGATCTATGAAGCACAAACACTCCATTTTAGGGGAAGTGTATATCTGACATACTCTAGACATGTGTTTGCAAATTTTTGTGGGGACACAGCTGGGATACTTATTGGACACTGTTGAGAAAATGTTTTAGAGCGAAAATGCTTGAGTCTTTTATGTTGGACCCAAATTTAAAGCTAAAGCAATTATATGTTAACAAAATAAAAGGAAAGCCCGTTTTCTTAACCAAAGATAAAAAAAAAGGTAAGTACGAAAGAGTGTATTCCCAATGTGTCCGTGTCCTAATCTTTTTGAAATTGGAAAATCGTCGTGTTGTGTTGTATCTGAGTTCGTATCTGTGCTTCTTAGGCTGCTTTAAAGTTTGAATTTTGGAGAGAGTGCATATGCTTAGTTTTGGTTTTTGGAAATGGCAGATAAGATTCAGAATACACAGCATAGAGTACCCTGCAATCCCAGTGGAGCAGCCAAAAGAGAGAGATTCAAAATTTCCAATGGAGGAGAAACCAAAAGAGAACATTAATGTAAAAGCATTTGCTCCCATGATTGTTACTGTATGTCACTCACTCTCAACTTCTACCATTTCCTTTACTTTGTATTATTGATAAATGTGTTTGTGTTTGTAGCATTAGTCAGAGGAAGACTCACTGTCAATGGCATATTATGACCATTCCCATTAAACAGCAACTATTTTGTGAATAAGGTCTATTGTTTTTTGGGTGTAGGCAACAATTGACCATGACGGATTGGGTCCTCTTTCATGGTGGGATGGTTCGGGAGATGTCGAGGAGGAGGCCGAGGCTGAGGAAGATTCCTAAGATCAGTATCCTATTTAATGGGTATTCATTCATTCATAACTCTGTATTATACATAATTATCATTTGGCATAGGCATTATAGACATGATAGTCACATATGATCAAGCGAGAAAAAGGTGGTCCGCTTTTCACTTTTGTACTCGTAGCGTTGGTTAATTTTGATTATAGGTGTAAATACTACTTAACTTTAGCAGCTTTAATTCATGTACTTTAAAAAAACGGCTTCTTCTGTCTTTGTACTTTCAAACAGTGTTCATTTAATAAACTAACCTTTCACCTT

mRNA sequence

CACATTTTTATCTTCCTCTCTCTCTTCACACGTGCTCCACCTCCCCCCTCTCACTTTTCAGCTTCACTGCCGGCTCCCTCTCTTCTCCGCCGCCGCCGTATTTATCCGTTCCGTATCGCCGCGCCGCCTCCTTCGTAGCCGGCGTGTACTGGATATTTGACTCTATTGTTACCGGTATCCTCCCAAATTCCATCTATCTGTTTCCCTCTTCCTTTCTCTCTTTCTCTCTCTCTGGCTCTCACCAGCAGTCATCGAATCAGCCCCCGACTGCAAAAGACCTCTTTTTCAGGCATTACCTCACGCTCCTTCTCTCTATGATTCTTTCTCTCAAAACCCATCTTATTCTTCCTCAAAATTTTAGTCTTTAGAACACCCCCCATTTCCAAGTACGAAATCATTTGTCTTTTGGGTTTTGAAGAAAGAGGGAGAGAAGAACTAGCGACTGAATTCGAAGAATCTTCAAAATTCCTGGGTTTCTTCAATCTTTGGATTTGATTTCTGTCTTCTTTAACGAGCCTCAAGGATTGTGTTTTCGTTGGAACTATTAGCCTATAGAGAACATCCAGATGTTCTATCTTAGCCGAATTGAGCACACACTACGTGTGCCTCCAAGCTTGCTTCATCTACCTATCCTTGATGCTATTAAGGGCGAGCTGGAGAAACTATTCTTAGATAAGGTGGTTGCAAACTTGGGGCTCTGTATTTCCGTTTATGATATAAGATCGGTCGATGGGGGCTTTATCTTTCCAAGCGATGGTGCTGCAACATACAAGGTTGTGTTCACATTGATTGTGTTTCGTCCATACGTGGGGGAGGTAATTATTGGAAAAGTTAAAGAATCAGATGAAAATGGTTTGCGAAAGCAAAACCCTAATGGTTTTGAAACCTTAGCCTCCACTTGCAGTTCATCACCAGACAGCGTCAAAGTGCCGCCATTCATCATCTCTTCCACCCTCCATCAAGGTTTGTCTCAAAAGTCATTGCTTGGGTCAGAGCTCTGCGTTAAAGTTTCTTCTCGTTGCCGTCTGGTATCACTTGGATTTTTCGAGGACATTCATGTTCCTGTCCATCTTTTGCCCTCAAAATCTGAATTCACGCCAGACCCAAATAATGGTGGAAAACTCAGATGGGTGTGGGACTATGAAGGTGTACCGTGCGACATATATGAAACTGATGAGATAAGATTCAGAATACACAGCATAGAGTACCCTGCAATCCCAGTGGAGCAGCCAAAAGAGAGAGATTCAAAATTTCCAATGGAGGAGAAACCAAAAGAGAACATTAATGTAAAAGCATTTGCTCCCATGATTGTTACTGCAACAATTGACCATGACGGATTGGGTCCTCTTTCATGGTGGGATGGTTCGGGAGATGTCGAGGAGGAGGCCGAGGCTGAGGAAGATTCCTAAGATCAGTATCCTATTTAATGGGTATTCATTCATTCATAACTCTGTATTATACATAATTATCATTTGGCATAGGCATTATAGACATGATAGTCACATATGATCAAGCGAGAAAAAGGTGGTCCGCTTTTCACTTTTGTACTCGTAGCGTTGGTTAATTTTGATTATAGGTGTAAATACTACTTAACTTTAGCAGCTTTAATTCATGTACTTTAAAAAAACGGCTTCTTCTGTCTTTGTACTTTCAAACAGTGTTCATTTAATAAACTAACCTTTCACCTT

Coding sequence (CDS)

ATGTTCTATCTTAGCCGAATTGAGCACACACTACGTGTGCCTCCAAGCTTGCTTCATCTACCTATCCTTGATGCTATTAAGGGCGAGCTGGAGAAACTATTCTTAGATAAGGTGGTTGCAAACTTGGGGCTCTGTATTTCCGTTTATGATATAAGATCGGTCGATGGGGGCTTTATCTTTCCAAGCGATGGTGCTGCAACATACAAGGTTGTGTTCACATTGATTGTGTTTCGTCCATACGTGGGGGAGGTAATTATTGGAAAAGTTAAAGAATCAGATGAAAATGGTTTGCGAAAGCAAAACCCTAATGGTTTTGAAACCTTAGCCTCCACTTGCAGTTCATCACCAGACAGCGTCAAAGTGCCGCCATTCATCATCTCTTCCACCCTCCATCAAGGTTTGTCTCAAAAGTCATTGCTTGGGTCAGAGCTCTGCGTTAAAGTTTCTTCTCGTTGCCGTCTGGTATCACTTGGATTTTTCGAGGACATTCATGTTCCTGTCCATCTTTTGCCCTCAAAATCTGAATTCACGCCAGACCCAAATAATGGTGGAAAACTCAGATGGGTGTGGGACTATGAAGGTGTACCGTGCGACATATATGAAACTGATGAGATAAGATTCAGAATACACAGCATAGAGTACCCTGCAATCCCAGTGGAGCAGCCAAAAGAGAGAGATTCAAAATTTCCAATGGAGGAGAAACCAAAAGAGAACATTAATGTAAAAGCATTTGCTCCCATGATTGTTACTGCAACAATTGACCATGACGGATTGGGTCCTCTTTCATGGTGGGATGGTTCGGGAGATGTCGAGGAGGAGGCCGAGGCTGAGGAAGATTCCTAA

Protein sequence

MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQNPNGFETLASTCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEAEEDS

Homology

[Close]

BLAST of CmUC09G164560 vs. NCBI nr
Match: XP_038897233.1 (DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Benincasa hispida] >XP_038897234.1 DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Benincasa hispida] >XP_038897235.1 DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Benincasa hispida] >XP_038897236.1 DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Benincasa hispida])

HSP 1 Score: 384.4 bits (986), Expect = 8.3e-103
Identity = 194/279 (69.53%), Postives = 213/279 (76.34%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPP+LLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPNLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQNPNGFETLASTCSSSPDSVK 120
           PSDGAATYKVVFTLIVFRP+VGEVIIGKVKES+  GLR                      
Sbjct: 61  PSDGAATYKVVFTLIVFRPFVGEVIIGKVKESNAKGLR---------------------- 120

Query: 121 VPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDP 180
                                             +SLGFFEDI+VPV LLPS S+F PD 
Sbjct: 121 ----------------------------------ISLGFFEDINVPVELLPSGSKFEPDL 180

Query: 181 NNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENIN 240
           NNGGKLRWVW+Y+ VPCDIYETDEIRF+IHSI+YPAIPVEQPKERDSKF MEE+P+ENIN
Sbjct: 181 NNGGKLRWVWEYQDVPCDIYETDEIRFKIHSIDYPAIPVEQPKERDSKFLMEEQPRENIN 223

Query: 241 VKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEAEED 280
           VKAFAPM++TATIDHDGLGP+SWW+G GDVE+E EAE++
Sbjct: 241 VKAFAPMLITATIDHDGLGPISWWEGGGDVEDEVEAEDE 223

[Close]

BLAST of CmUC09G164560 vs. NCBI nr
Match: XP_023547503.1 (DNA-directed RNA polymerase III subunit RPC8 [Cucurbita pepo subsp. pepo] >XP_023547504.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 380.2 bits (975), Expect = 1.6e-101
Identity = 193/281 (68.68%), Postives = 210/281 (74.73%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPPS+LHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQNPNGFETLASTCSSSPDSVK 120
           PSDGAATYKVVFTLIVFRPY GE+IIGKVKESD NGLR                      
Sbjct: 61  PSDGAATYKVVFTLIVFRPYAGEIIIGKVKESDANGLR---------------------- 120

Query: 121 VPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDP 180
                                             +SLGFFEDI+VP+HLLPS SEF PDP
Sbjct: 121 ----------------------------------ISLGFFEDIYVPIHLLPSPSEFKPDP 180

Query: 181 NNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPV-EQPKERDSKFPMEEKPKENI 240
            NGGK RWVWDY+G P DIYETDEI+FRIHSI+YPAIPV +QP E +SKF MEE+PKEN+
Sbjct: 181 KNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQPKENV 225

Query: 241 NVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEAEEDS 281
           NVK FAPM+VTATID+DGLGP+SWWDGSGD + +AEAEEDS
Sbjct: 241 NVKPFAPMVVTATIDYDGLGPVSWWDGSGDADADAEAEEDS 225

[Close]

BLAST of CmUC09G164560 vs. NCBI nr
Match: KAG7014295.1 (DNA-directed RNA polymerase III subunit RPC8 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 377.5 bits (968), Expect = 1.0e-100
Identity = 192/281 (68.33%), Postives = 208/281 (74.02%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPPS+LHLPILDAIKGELEKLFLDKVVA LGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQNPNGFETLASTCSSSPDSVK 120
           PSDGAATYKVVFTLIVFRPY GE+IIGKVKESD NGLR                      
Sbjct: 61  PSDGAATYKVVFTLIVFRPYAGEIIIGKVKESDANGLR---------------------- 120

Query: 121 VPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDP 180
                                             +SLGFFEDI+VP+HLLPS SEF PDP
Sbjct: 121 ----------------------------------ISLGFFEDIYVPIHLLPSPSEFKPDP 180

Query: 181 NNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPV-EQPKERDSKFPMEEKPKENI 240
            NGGK RWVWDY+G P DIYETDEI+FRIHSI+YPAIPV +QP E +SKF MEE+PKEN+
Sbjct: 181 KNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQPKENV 225

Query: 241 NVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEAEEDS 281
           NVK FAPM+VTATID+DGLGP+SWWDGSGD + E EAEEDS
Sbjct: 241 NVKPFAPMVVTATIDYDGLGPVSWWDGSGDADAEGEAEEDS 225

[Close]

BLAST of CmUC09G164560 vs. NCBI nr
Match: XP_022954042.1 (DNA-directed RNA polymerase III subunit RPC8 [Cucurbita moschata] >XP_022954043.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita moschata])

HSP 1 Score: 374.0 bits (959), Expect = 1.1e-99
Identity = 193/283 (68.20%), Postives = 209/283 (73.85%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPPS+LHLPILDAIKGELEKLFLDKVVA LGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQNPNGFETLASTCSSSPDSVK 120
           PSDGAATYKVVFTLIVFRPY GE+IIGKVKESD NGLR                      
Sbjct: 61  PSDGAATYKVVFTLIVFRPYAGEIIIGKVKESDANGLR---------------------- 120

Query: 121 VPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDP 180
                                             +SLGFFEDI+VP+HLLPS SEF PDP
Sbjct: 121 ----------------------------------ISLGFFEDIYVPIHLLPSPSEFKPDP 180

Query: 181 NNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPV-EQPKERDSKFPMEEKPKENI 240
            NGGK RWVWDY+G P DIYETDEI+FRIHSI+YPAIPV +QP E +SKF MEE+PKEN+
Sbjct: 181 KNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQPKENV 227

Query: 241 NVKAFAPMIVTATIDHDGLGPLSWWDGSG--DVEEEAEAEEDS 281
           NVK FAPM+VTATID+DGLGP+SWWDGSG  D + EAEAEEDS
Sbjct: 241 NVKPFAPMVVTATIDYDGLGPVSWWDGSGDADADAEAEAEEDS 227

[Close]

BLAST of CmUC09G164560 vs. NCBI nr
Match: XP_022991804.1 (DNA-directed RNA polymerase III subunit RPC8 [Cucurbita maxima] >XP_022991805.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita maxima])

HSP 1 Score: 372.9 bits (956), Expect = 2.5e-99
Identity = 193/285 (67.72%), Postives = 208/285 (72.98%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPPS+LHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQNPNGFETLASTCSSSPDSVK 120
           PSDGAATYKVVFTLIVFRPY GE+IIGKVKESD NGLR                      
Sbjct: 61  PSDGAATYKVVFTLIVFRPYAGEIIIGKVKESDANGLR---------------------- 120

Query: 121 VPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDP 180
                                             +SLGFFEDI+VP+HLLPS SEF PDP
Sbjct: 121 ----------------------------------ISLGFFEDIYVPIHLLPSPSEFKPDP 180

Query: 181 NNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPV-EQPKERDSKFPMEEKPKENI 240
            N GK RWVWDY+G P DIYETDEI+FRIHSI+YP IPV +QP E +SKF MEE+PKEN+
Sbjct: 181 KNSGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPTIPVDQQPNESNSKFQMEEQPKENV 229

Query: 241 NVKAFAPMIVTATIDHDGLGPLSWWDGSGD----VEEEAEAEEDS 281
           NVK FAPM+VTATID+DGLGP+SWWDGSGD     E EAEAEEDS
Sbjct: 241 NVKPFAPMVVTATIDYDGLGPVSWWDGSGDADAEAEAEAEAEEDS 229

[Close]

BLAST of CmUC09G164560 vs. ExPASy Swiss-Prot
Match: Q9Y535 (DNA-directed RNA polymerase III subunit RPC8 OS=Homo sapiens OX=9606 GN=POLR3H PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.0e-23
Identity = 80/268 (29.85%), Postives = 116/268 (43.28%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MF L  +  T+R+PP      + D+I  EL K   +KVV N+GLCI ++DI  ++  ++F
Sbjct: 1   MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQNPNGFETLASTCSSSPDSVK 120
           P DGA+  KV F  +VF P++ E++IGK+K                        SP+ V 
Sbjct: 61  PGDGASHTKVHFRCVVFHPFLDEILIGKIK----------------------GCSPEGVH 120

Query: 121 VPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDP 180
                                             VSLGFF+DI +P   L   ++F    
Sbjct: 121 ----------------------------------VSLGFFDDILIPPESLQQPAKF---- 180

Query: 181 NNGGKLRWVWDYEGV--PCDIY--ETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPK 240
            +  +  WVW+YE      D+Y    +EIRFR+    +       P   D+    EE PK
Sbjct: 181 -DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSEELPK 201

Query: 241 ENINVKAFAPMIVTATIDHDGLGPLSWW 265
           +       AP  +  +I   GLG LSWW
Sbjct: 241 KE------APYTLVGSISEPGLGLLSWW 201

[Close]

BLAST of CmUC09G164560 vs. ExPASy Swiss-Prot
Match: Q9D2C6 (DNA-directed RNA polymerase III subunit RPC8 OS=Mus musculus OX=10090 GN=Polr3h PE=1 SV=2)

HSP 1 Score: 110.5 bits (275), Expect = 3.0e-23
Identity = 79/268 (29.48%), Postives = 116/268 (43.28%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MF L  +  T+R+PP      + D+I  EL K   +KVV N+GLCI ++DI  ++  ++F
Sbjct: 1   MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQNPNGFETLASTCSSSPDSVK 120
           P DGA+  KV F  +VF P++ E++IGK+K                        SP+ V 
Sbjct: 61  PGDGASHTKVHFRYVVFHPFLDEILIGKIK----------------------GCSPEGVH 120

Query: 121 VPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDP 180
                                             VSLGFF+DI +P   L   ++F    
Sbjct: 121 ----------------------------------VSLGFFDDILIPPESLQQPAKF---- 180

Query: 181 NNGGKLRWVWDYEGV--PCDIY--ETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPK 240
            +  +  WVW+YE      D+Y    +EIRFR+    +       P   ++    EE PK
Sbjct: 181 -DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEAASSSEELPK 201

Query: 241 ENINVKAFAPMIVTATIDHDGLGPLSWW 265
           +       AP  +  +I   GLG LSWW
Sbjct: 241 KE------APYTLVGSISEPGLGLLSWW 201

[Close]

BLAST of CmUC09G164560 vs. ExPASy Swiss-Prot
Match: Q2T9X1 (DNA-directed RNA polymerase III subunit RPC8 OS=Bos taurus OX=9913 GN=POLR3H PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.7e-23
Identity = 78/271 (28.78%), Postives = 117/271 (43.17%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MF L  +  T+R+PP      + D+I  EL K   +KV+ N+GLCI ++DI  ++  ++F
Sbjct: 1   MFVLVEMVDTVRIPPWQFERKLNDSIDEELNKKLANKVMYNVGLCICLFDITKLEDAYVF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQNPNGFETLASTCSSSPDSVK 120
           P DGA+  KV F  +VF P++ E++IGK+K                        SP+ V 
Sbjct: 61  PGDGASHTKVHFRYVVFHPFLDEILIGKIK----------------------GCSPEGVH 120

Query: 121 VPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDP 180
                                             VSLGFF+DI +P   L   ++F    
Sbjct: 121 ----------------------------------VSLGFFDDILIPPESLQQPAKF---- 180

Query: 181 NNGGKLRWVWDYEGV--PCDIYET--DEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPK 240
            +  +  WVW+YE      D+Y    +E+RFR+    +       P   ++    EE PK
Sbjct: 181 -DEAEQVWVWEYETEEGAHDLYMDIGEEVRFRVVDESFVDTSPTGPSSAEAASSSEELPK 204

Query: 241 ENINVKAFAPMIVTATIDHDGLGPLSWWDGS 268
           +       AP  +  +I   GLG LSWW  S
Sbjct: 241 KE------APYTLMGSISEPGLGLLSWWTSS 204

[Close]

BLAST of CmUC09G164560 vs. ExPASy Swiss-Prot
Match: O94285 (DNA-directed RNA polymerase III subunit rpc8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc25 PE=1 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.8e-21
Identity = 74/270 (27.41%), Postives = 114/270 (42.22%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MF LSR    + + PS    P  +A+  E+ K + +KV+ N+GL I VYD   +  G I 
Sbjct: 1   MFLLSRFSDIISIHPSNFWKPTKEALAEEIHKKYANKVIQNIGLAICVYDFLKIGEGIIK 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQNPNGFETLASTCSSSPDSVK 120
             DG++   VVF LI+FRP+ GEV++GK+K   E G+R                      
Sbjct: 61  YGDGSSYMNVVFRLIIFRPFRGEVMLGKIKSCSEEGIR---------------------- 120

Query: 121 VPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDP 180
                                             V++ FF+DI +P  +L     F PD 
Sbjct: 121 ----------------------------------VTISFFDDIFIPKDMLFDPCVFRPD- 180

Query: 181 NNGGKLRWVWDYEGVP----CDIY--ETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEK 240
               +  WVW  EG       ++Y    +EIRF+I S ++  I  ++ K   +    E  
Sbjct: 181 ----ERAWVWKIEGEDGSEGTELYFDIDEEIRFQIESEDFVDISPKRNKNATAITGTEA- 202

Query: 241 PKENINVKAFAPMIVTATIDHDGLGPLSWW 265
                 +++ +P  + A+   DGLG  +WW
Sbjct: 241 ------LESVSPYTLIASCSRDGLGIPAWW 202

[Close]

BLAST of CmUC09G164560 vs. ExPASy Swiss-Prot
Match: P35718 (DNA-directed RNA polymerase III subunit RPC8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPC25 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 8.2e-21
Identity = 70/275 (25.45%), Postives = 122/275 (44.36%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MF LS+I   +R+PP   H   + AI  +L   F +K++ N+GLCI++YD+ +V+ G + 
Sbjct: 1   MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQNPNGFETLASTCSSSPDSVK 120
           P DG++   V F  +VF+P++GE++ G + +    G                        
Sbjct: 61  PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEG------------------------ 120

Query: 121 VPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDP 180
                                    +KVS       LG F+DI +P ++L     +TP+ 
Sbjct: 121 -------------------------IKVS------LLGIFDDIFIPQNMLFEGCYYTPEE 180

Query: 181 NNGGKLRWVWDYEGVPCDIYETDE-IRFRIHSIEYPAIPVEQPKER--DSKFPME----- 240
           +      W+W  +      ++ +E IRFRI    +  +  + PKER  + +  +E     
Sbjct: 181 S-----AWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLENEIEG 212

Query: 241 --EKPKENINVKAFAPMIVTATIDHDGLGPLSWWD 266
             E+  +N    A+A   +  +   DG+G +SWW+
Sbjct: 241 KNEETPQNEKPPAYA---LLGSCQTDGMGLVSWWE 212

[Close]

BLAST of CmUC09G164560 vs. ExPASy TrEMBL
Match: A0A6J1GPX5 (DNA-directed RNA polymerase III subunit RPC8 OS=Cucurbita moschata OX=3662 GN=LOC111456422 PE=3 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 5.4e-100
Identity = 193/283 (68.20%), Postives = 209/283 (73.85%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPPS+LHLPILDAIKGELEKLFLDKVVA LGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQNPNGFETLASTCSSSPDSVK 120
           PSDGAATYKVVFTLIVFRPY GE+IIGKVKESD NGLR                      
Sbjct: 61  PSDGAATYKVVFTLIVFRPYAGEIIIGKVKESDANGLR---------------------- 120

Query: 121 VPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDP 180
                                             +SLGFFEDI+VP+HLLPS SEF PDP
Sbjct: 121 ----------------------------------ISLGFFEDIYVPIHLLPSPSEFKPDP 180

Query: 181 NNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPV-EQPKERDSKFPMEEKPKENI 240
            NGGK RWVWDY+G P DIYETDEI+FRIHSI+YPAIPV +QP E +SKF MEE+PKEN+
Sbjct: 181 KNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQPKENV 227

Query: 241 NVKAFAPMIVTATIDHDGLGPLSWWDGSG--DVEEEAEAEEDS 281
           NVK FAPM+VTATID+DGLGP+SWWDGSG  D + EAEAEEDS
Sbjct: 241 NVKPFAPMVVTATIDYDGLGPVSWWDGSGDADADAEAEAEEDS 227

[Close]

BLAST of CmUC09G164560 vs. ExPASy TrEMBL
Match: A0A6J1JVU8 (DNA-directed RNA polymerase III subunit RPC8 OS=Cucurbita maxima OX=3661 GN=LOC111488343 PE=3 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 1.2e-99
Identity = 193/285 (67.72%), Postives = 208/285 (72.98%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPPS+LHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQNPNGFETLASTCSSSPDSVK 120
           PSDGAATYKVVFTLIVFRPY GE+IIGKVKESD NGLR                      
Sbjct: 61  PSDGAATYKVVFTLIVFRPYAGEIIIGKVKESDANGLR---------------------- 120

Query: 121 VPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDP 180
                                             +SLGFFEDI+VP+HLLPS SEF PDP
Sbjct: 121 ----------------------------------ISLGFFEDIYVPIHLLPSPSEFKPDP 180

Query: 181 NNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPV-EQPKERDSKFPMEEKPKENI 240
            N GK RWVWDY+G P DIYETDEI+FRIHSI+YP IPV +QP E +SKF MEE+PKEN+
Sbjct: 181 KNSGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPTIPVDQQPNESNSKFQMEEQPKENV 229

Query: 241 NVKAFAPMIVTATIDHDGLGPLSWWDGSGD----VEEEAEAEEDS 281
           NVK FAPM+VTATID+DGLGP+SWWDGSGD     E EAEAEEDS
Sbjct: 241 NVKPFAPMVVTATIDYDGLGPVSWWDGSGDADAEAEAEAEAEEDS 229

[Close]

BLAST of CmUC09G164560 vs. ExPASy TrEMBL
Match: A0A6J1DFX3 (DNA-directed RNA polymerase III subunit RPC8 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111020040 PE=3 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 1.1e-97
Identity = 194/284 (68.31%), Postives = 209/284 (73.59%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPPS+LHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQNPNGFETLASTCSSSPDSVK 120
           PSDGAATYKVVFTLIVFRPYVGE+IIGKVKESD NGLR                      
Sbjct: 61  PSDGAATYKVVFTLIVFRPYVGEIIIGKVKESDANGLR---------------------- 120

Query: 121 VPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDP 180
                                             +SLGFFEDI+VP+HLLP+ SEF PD 
Sbjct: 121 ----------------------------------ISLGFFEDIYVPIHLLPTPSEFKPDS 180

Query: 181 NNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEE-KPKENI 240
            NGGK RWVWDY+G P DIYETDEI+FRIH+IEYPAIPVEQPKE + KF  EE +PKE+ 
Sbjct: 181 KNGGKRRWVWDYDGQPYDIYETDEIKFRIHNIEYPAIPVEQPKESNEKFLTEEQQPKEST 228

Query: 241 -NVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAE--AEEDS 281
            NVKAFAPMIVT TID+DGLGP+SWWDGSGDV+ EAE  AEEDS
Sbjct: 241 SNVKAFAPMIVTGTIDYDGLGPVSWWDGSGDVDPEAEVGAEEDS 228

[Close]

BLAST of CmUC09G164560 vs. ExPASy TrEMBL
Match: A0A5A7UWI5 (DNA-directed RNA polymerase III subunit RPC8 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold670G00020 PE=3 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.9e-97
Identity = 187/280 (66.79%), Postives = 207/280 (73.93%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPPSLL+LPILDAIKGELEKLF+DKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQNPNGFETLASTCSSSPDSVK 120
           PSDGAATYKVVFTLIVFRP+ GEVIIGKV+ES+ENGLR                      
Sbjct: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLR---------------------- 120

Query: 121 VPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDP 180
                                             +SLGFFEDI+VPV L+PS SEFTPD 
Sbjct: 121 ----------------------------------ISLGFFEDIYVPVELMPSGSEFTPDE 180

Query: 181 NNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENIN 240
           NNGG+ RWVW Y  VP DIYE+DEI+F+IHSIEYPAI VEQPKE +SKFPMEEKPKE+IN
Sbjct: 181 NNGGRRRWVWIYNEVPFDIYESDEIKFKIHSIEYPAILVEQPKESNSKFPMEEKPKESIN 224

Query: 241 VKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEAEEDS 281
           VK FAPM++TA++D DGLGP+SWWDGSG+ E E E EEDS
Sbjct: 241 VKPFAPMVITASLDQDGLGPVSWWDGSGEAEAEDEVEEDS 224

[Close]

BLAST of CmUC09G164560 vs. ExPASy TrEMBL
Match: A0A1S3CEN6 (DNA-directed RNA polymerase III subunit RPC8 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500005 PE=3 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.9e-97
Identity = 187/280 (66.79%), Postives = 207/280 (73.93%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPPSLL+LPILDAIKGELEKLF+DKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQNPNGFETLASTCSSSPDSVK 120
           PSDGAATYKVVFTLIVFRP+ GEVIIGKV+ES+ENGLR                      
Sbjct: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLR---------------------- 120

Query: 121 VPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDP 180
                                             +SLGFFEDI+VPV L+PS SEFTPD 
Sbjct: 121 ----------------------------------ISLGFFEDIYVPVELMPSGSEFTPDE 180

Query: 181 NNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENIN 240
           NNGG+ RWVW Y  VP DIYE+DEI+F+IHSIEYPAI VEQPKE +SKFPMEEKPKE+IN
Sbjct: 181 NNGGRRRWVWIYNEVPFDIYESDEIKFKIHSIEYPAILVEQPKESNSKFPMEEKPKESIN 224

Query: 241 VKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEAEEDS 281
           VK FAPM++TA++D DGLGP+SWWDGSG+ E E E EEDS
Sbjct: 241 VKPFAPMVITASLDQDGLGPVSWWDGSGEAEAEDEVEEDS 224

[Close]

BLAST of CmUC09G164560 vs. TAIR 10
Match: AT1G06790.1 (RNA polymerase Rpb7 N-terminal domain-containing protein )

HSP 1 Score: 219.5 bits (558), Expect = 3.3e-57
Identity = 117/276 (42.39%), Postives = 156/276 (56.52%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLS +EH+LRVPP LL+LP+ DAIK  L+ +FLDKV+A+LGLC+S+YDI+SV+GGF+ 
Sbjct: 1   MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQNPNGFETLASTCSSSPDSVK 120
           P DGAATYKV   ++VFRP+VGEVI  K KESD NGLR                      
Sbjct: 61  PGDGAATYKVGLRIVVFRPFVGEVIAAKFKESDANGLR---------------------- 120

Query: 121 VPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDP 180
                                             ++LGFF+DI+VP  L+P  +   PDP
Sbjct: 121 ----------------------------------LTLGFFDDIYVPAPLMPKPNRCEPDP 180

Query: 181 NNGGKLRWVWDYEGVPCDIYETD---EIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKE 240
            N  ++ WVW+Y G P + Y  D   +I+FR+ SI YP++P E+ ++             
Sbjct: 181 YNRKQMIWVWEY-GEPKEDYIVDDACQIKFRVESISYPSVPTERAED------------- 203

Query: 241 NINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEE 274
               K FAPM+VT  +D DGLGP+SWWD    V++E
Sbjct: 241 ---AKPFAPMVVTGNMDDDGLGPVSWWDSYEQVDQE 203

[Close]

BLAST of CmUC09G164560 vs. TAIR 10
Match: AT1G06790.2 (RNA polymerase Rpb7 N-terminal domain-containing protein )

HSP 1 Score: 191.8 bits (486), Expect = 7.3e-49
Identity = 105/255 (41.18%), Postives = 141/255 (55.29%), Query Frame = 0


Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLS +EH+LRVPP LL+LP+ DAIK  L+ +FLDKV+A+LGLC+S+YDI+SV+GGF+ 
Sbjct: 1   MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQNPNGFETLASTCSSSPDSVK 120
           P DGAATYKV   ++VFRP+VGEVI  K KESD NGLR                      
Sbjct: 61  PGDGAATYKVGLRIVVFRPFVGEVIAAKFKESDANGLR---------------------- 120

Query: 121 VPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDP 180
                                             ++LGFF+DI+VP  L+P  +   PDP
Sbjct: 121 ----------------------------------LTLGFFDDIYVPAPLMPKPNRCEPDP 180

Query: 181 NNGGKLRWVWDYEGVPCDIYETD---EIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKE 240
            N  ++ WVW+Y G P + Y  D   +I+FR+ SI YP++P E+ ++             
Sbjct: 181 YNRKQMIWVWEY-GEPKEDYIVDDACQIKFRVESISYPSVPTERAED------------- 182

Query: 241 NINVKAFAPMIVTAT 253
               K FAPM+VT +
Sbjct: 241 ---AKPFAPMVVTVS 182

The following BLAST results are available for this feature:

BLAST of CmUC09G164560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897233.1	8.3e-103	69.53	DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Benincasa hispida] >XP_...	[more]
XP_023547503.1	1.6e-101	68.68	DNA-directed RNA polymerase III subunit RPC8 [Cucurbita pepo subsp. pepo] >XP_02...	[more]
KAG7014295.1	1.0e-100	68.33	DNA-directed RNA polymerase III subunit RPC8 [Cucurbita argyrosperma subsp. argy...	[more]
XP_022954042.1	1.1e-99	68.20	DNA-directed RNA polymerase III subunit RPC8 [Cucurbita moschata] >XP_022954043....	[more]
XP_022991804.1	2.5e-99	67.72	DNA-directed RNA polymerase III subunit RPC8 [Cucurbita maxima] >XP_022991805.1 ...	[more]

BLAST of CmUC09G164560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9Y535	1.0e-23	29.85	DNA-directed RNA polymerase III subunit RPC8 OS=Homo sapiens OX=9606 GN=POLR3H P...	[more]
Q9D2C6	3.0e-23	29.48	DNA-directed RNA polymerase III subunit RPC8 OS=Mus musculus OX=10090 GN=Polr3h ...	[more]
Q2T9X1	6.7e-23	28.78	DNA-directed RNA polymerase III subunit RPC8 OS=Bos taurus OX=9913 GN=POLR3H PE=...	[more]
O94285	4.8e-21	27.41	DNA-directed RNA polymerase III subunit rpc8 OS=Schizosaccharomyces pombe (strai...	[more]
P35718	8.2e-21	25.45	DNA-directed RNA polymerase III subunit RPC8 OS=Saccharomyces cerevisiae (strain...	[more]

BLAST of CmUC09G164560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GPX5	5.4e-100	68.20	DNA-directed RNA polymerase III subunit RPC8 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1JVU8	1.2e-99	67.72	DNA-directed RNA polymerase III subunit RPC8 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1DFX3	1.1e-97	68.31	DNA-directed RNA polymerase III subunit RPC8 isoform X2 OS=Momordica charantia O...	[more]
A0A5A7UWI5	1.9e-97	66.79	DNA-directed RNA polymerase III subunit RPC8 isoform X1 OS=Cucumis melo var. mak...	[more]
A0A1S3CEN6	1.9e-97	66.79	DNA-directed RNA polymerase III subunit RPC8 isoform X1 OS=Cucumis melo OX=3656 ...	[more]

BLAST of CmUC09G164560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06790.1	3.3e-57	42.39	RNA polymerase Rpb7 N-terminal domain-containing protein	[more]
AT1G06790.2	7.3e-49	41.18	RNA polymerase Rpb7 N-terminal domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005576	RNA polymerase Rpb7-like , N-terminal	PFAM	PF03876	SHS2_Rpb7-N	coord: 8..64 e-value: 2.0E-10 score: 40.8
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	GENE3D	3.30.1490.120		coord: 1..79 e-value: 3.5E-25 score: 90.1
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	SUPERFAMILY	88798	N-terminal, heterodimerisation domain of RBP7 (RpoE)	coord: 1..78
IPR013238	RNA polymerase III, subunit Rpc25	PFAM	PF08292	RNA_pol_Rbc25	coord: 155..264 e-value: 2.5E-17 score: 63.3
None	No IPR available	GENE3D	2.40.50.140		coord: 146..265 e-value: 1.1E-22 score: 82.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 260..280
None	No IPR available	PANTHER	PTHR12709:SF9	BNAC08G44960D PROTEIN	coord: 1..99
None	No IPR available	PANTHER	PTHR12709:SF9	BNAC08G44960D PROTEIN	coord: 154..273
None	No IPR available	CDD	cd04330	RNAP_III_Rpc25_N	coord: 2..81 e-value: 8.31708E-37 score: 123.858
IPR045113	RNA polymerase Rpb7-like	PANTHER	PTHR12709	DNA-DIRECTED RNA POLYMERASE II, III	coord: 1..99
IPR045113	RNA polymerase Rpb7-like	PANTHER	PTHR12709	DNA-DIRECTED RNA POLYMERASE II, III	coord: 154..273

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC09G164560.1	CmUC09G164560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006384	transcription initiation from RNA polymerase III promoter
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity