CmUC09G163710 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC09G163710
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	DNA-directed RNA polymerases II, IV and V subunit 11-like
Location	CmU531Chr09: 3380612 .. 3383357 (-)
RNA-Seq Expression	CmUC09G163710
Synteny	CmUC09G163710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACGTGGCTGGGCTGGCAAAAAGGGCCAAGTGGCGTGCTCGCGTATAAATAGCCACGTCGCCATCCTCAAAGAGCTACTTTCAGAGAGAGTTTCAGTTTCAGAGAGAAAACCAAGACAGACGATGAATGTCCCCGATCGCTACGAGCGCTTCGTCGTCCCCGAGGGCGCCAAGAAGTTAATTCTTGAAACCCTAACTTTTTCACCATCTATTTCATTTCACGACCGATTTTGCTTTCTTTCCATATCCACCTCAACCATCTCTGTTGTGATTTTCTTTTCTGGACGGACGTCGATTTTGTTGAACATTGTAGGGTTTCGTACGAGAGAGACACGAAGATCATGAATGCAGCGACCTTTGTATTAGAGAGAGAGGATCATACTATTGGAAATATCCTCCGCATGTAAGGATTTTCTGTTAATCGGAGATTGATTCTGGCGATTTTAAATAATTTCTTCGTTCCTGTTTATTAACATGTATTATGGCCTGGATAATCAGGCAACTTCACAGAGACGATAATGTGTTGTTTGCTGGCTACCAGCTTCCTCATCCTCTGAAGTACAGAATACTTGTTCGGGTTAGTACTTCAATTATTTTTCCACGTTATAATTTTTGCTCTATTGCATGAATGGTTAAATGAATAGTATTGTGAGCATCTTTGAAAAGCAATGTTGCTGTTTGGTAAAGGGGGATTATAATCTAGAGGAGAATAGCTGATCAAATTTTATCACGTAATTAGCGTTGGTTTGTTCCTATAGTTCTCGGTTATTTGAGATTGACTGATCGAATGAGAATTTCCTCGGCTGGTAGGGCAGAGCAGGAACTTTTCACAGGAATTTCAGATTATACCTATTTAAGTACTTCATATGATGAAAAATTTTAAATCTTAACTTTTGTTTGTATGATTTTCTTAGTCTTAGTTTGAAATTCCTTGAGGATAGCAAAGATTTTGCAGATACTGATTGGTTTTAACTACTACGATTCTCGTAGCTTTGTTGTGGTCTGTTACTGAGCAAATTACAGTTGCCCATTAAGTTCTGATGTATAATAATTTTTTTAATTCTTTGGATGTAATTTTTCTGCAGATACAAACGGCTAGCCAGTCTTCACCGATGCAGGCATATAATCAGGCTATCAATGATTTGGACAAGGAGCTTGACGCTTTGAAATATGAGCTTGAGGTAATGCTTTCACTCCCCCTTGACTATTTCTTTCTGCAATTTGAGTGCTGTGAGTATGATTTGTTCTTATTCATTATGTGGGAATCCAGTCCTCTGATTATTTTGCACTTAAGGTTAGCACCTATTTTCTTTCGTTTTTGTTATTATATTTCTAAATGAATGATTTATGTTCATTTGTTTTAGTATATTAAGTGGGATGGGACTTTGAATATTCGAGTTTAAGGAAACGAATATACGCATAGTTGTGCTCACTTTAGCTTTAAATGATTGATTTTGATCCTTGATCTTCACATAAAAGTTTGTGTGGTCTTGTTAAATGTTCATATTACATTTAATATACTGTATAGAACTTGGATCACTTATTTTAAACTACAACACGGATGGGATACATGTAGTTTATAATACAAGTTCATTTCAAATTATTTGAAGCTTTTGTTAAATGTAGCATAAGAATTTAATAGTCATAGAAAAAAAGAACTTTTCTGCAAAGTGTTCAAGGGACAAAAATTTACAAGTCTAAATATCTAAAAGGAAAGAAAAGAAGATATTGTCATTATTTACATTTGTGAATTGCTTGATGCAGGGTGAGATTTCAAGGTTCTCGAGGACCTATTAGTTTGCCTTCCAAGAAAACCAAAAAAGTTCGAACTCAATAACGTCAAGTTGGAAATGGGATGCCAATAATAAAATTTACGCCTACTTTTTAGTTTGGCTCCTTTTGGTGGTGGGAGTTGATTGTATTCTTTCTCTCTTTCTTTTAAATGCAGGTCCAAAATTTCATTAAAAATAATAATAAGAGTCCATTTTAGTTTAGTATTGATTTGGAATAAAGTTCAAGCTATATATATCATTTTGAACTTTGTACCCCATTTCAATAATACTTCACAACTCTAAAATTCATGTCTTTTAAAAAAAAATTGACTAGGTACCCTCATGGTAAGTATGGGACTAAAAAAGTTTTTCTTTTCTTCTTGGACCCGTTTGGATTGACCTAAAAAAGTGTTTTTCAAAAAATTCATTTTTATTTAAATTTTTCTTTGATCAAAACGGTTTAAAATACACTCCAAAATCTATTTTGAGTGGTTGTTAAGAACTTCAATTTTTTCTAGATTTTGAGTGGTTGTCTAGAACTTCAATTTTTTCTAAAATGACTTGGTTTTTTAATCAAATACTTAATGCACCATAAATTTCACCATCAAGAGACAATGGAAGAGAAACAGAGATATGAAGCCCAAAAGAGTGCTGCAAATGGATGATATAGAAGCTATCTTCACCACCATGATTACACCAATGGAAGAGACACAGGGCTCAAAATAAGGGGCTTTCAGCCAACGCCATGAAAATAGCTCAAGATATTCACAATGCATGGAAGAAGACAGACGAAACAGTAGAAAAAGAGATCTACCACGTATTTTGAGGCGTATTTTGAGAATTTTTTTAGTTAAATCTGTCTCATATGCATGAGTAGATCCTACATTAATATCAATATGTCTAATTTTATTTTTAAAAGCATGTTGTAGTATTGGAAAATTTCTCCTGCATTTCCCAATTCTGAAAATGAC

mRNA sequence

ATGACACGTGGCTGGGCTGGCAAAAAGGGCCAAGTGGCGTGCTCGCGTATAAATAGCCACGTCGCCATCCTCAAAGAGCTACTTTCAGAGAGAGTTTCAGTTTCAGAGAGAAAACCAAGACAGACGATGAATGTCCCCGATCGCTACGAGCGCTTCGTCGTCCCCGAGGGCGCCAAGAAGGTTTCGTACGAGAGAGACACGAAGATCATGAATGCAGCGACCTTTGTATTAGAGAGAGAGGATCATACTATTGGAAATATCCTCCGCATGCAACTTCACAGAGACGATAATGTGTTGTTTGCTGGCTACCAGCTTCCTCATCCTCTGAAGTACAGAATACTTGTTCGGATACAAACGGCTAGCCAGTCTTCACCGATGCAGGCATATAATCAGGCTATCAATGATTTGGACAAGGAGCTTGACGCTTTGAAATATGAGCTTGAGGTAATGCTTTCACTCCCCCTTGACTATTTCTTTCTGCAATTTGAGTGCTGTGAGTATGATTTGTTCTTATTCATTATGTGGGAATCCAGTCCTCTGATTATTTTGCACTTAAGGGTGAGATTTCAAGGTTCTCGAGGACCTATTAGTTTGCCTTCCAAGAAAACCAAAAAAGTTCGAACTCAATAACGTCAAGTTGGAAATGGGATGCCAATAATAAAATTTACGCCTACTTTTTAGTTTGGCTCCTTTTGGTGGTGGGAGTTGATTGTATTCTTTCTCTCTTTCTTTTAAATGCAGGTCCAAAATTTCATTAAAAATAATAATAAGAGTCCATTTTAGTTTAGTATTGATTTGGAATAAAGTTCAAGCTATATATATCATTTTGAACTTTGTACCCCATTTCAATAATACTTCACAACTCTAAAATTCATGTCTTTTAAAAAAAAATTGACTAGGTACCCTCATGGTAAGTATGGGACTAAAAAAGTTTTTCTTTTCTTCTTGGACCCGTTTGGATTGACCTAAAAAAGTGTTTTTCAAAAAATTCATTTTTATTTAAATTTTTCTTTGATCAAAACGGTTTAAAATACACTCCAAAATCTATTTTGAGTGGTTGTTAAGAACTTCAATTTTTTCTAGATTTTGAGTGGTTGTCTAGAACTTCAATTTTTTCTAAAATGACTTGGTTTTTTAATCAAATACTTAATGCACCATAAATTTCACCATCAAGAGACAATGGAAGAGAAACAGAGATATGAAGCCCAAAAGAGTGCTGCAAATGGATGATATAGAAGCTATCTTCACCACCATGATTACACCAATGGAAGAGACACAGGGCTCAAAATAAGGGGCTTTCAGCCAACGCCATGAAAATAGCTCAAGATATTCACAATGCATGGAAGAAGACAGACGAAACAGTAGAAAAAGAGATCTACCACGTATTTTGAGGCGTATTTTGAGAATTTTTTTAGTTAAATCTGTCTCATATGCATGAGTAGATCCTACATTAATATCAATATGTCTAATTTTATTTTTAAAAGCATGTTGTAGTATTGGAAAATTTCTCCTGCATTTCCCAATTCTGAAAATGAC

Coding sequence (CDS)

ATGACACGTGGCTGGGCTGGCAAAAAGGGCCAAGTGGCGTGCTCGCGTATAAATAGCCACGTCGCCATCCTCAAAGAGCTACTTTCAGAGAGAGTTTCAGTTTCAGAGAGAAAACCAAGACAGACGATGAATGTCCCCGATCGCTACGAGCGCTTCGTCGTCCCCGAGGGCGCCAAGAAGGTTTCGTACGAGAGAGACACGAAGATCATGAATGCAGCGACCTTTGTATTAGAGAGAGAGGATCATACTATTGGAAATATCCTCCGCATGCAACTTCACAGAGACGATAATGTGTTGTTTGCTGGCTACCAGCTTCCTCATCCTCTGAAGTACAGAATACTTGTTCGGATACAAACGGCTAGCCAGTCTTCACCGATGCAGGCATATAATCAGGCTATCAATGATTTGGACAAGGAGCTTGACGCTTTGAAATATGAGCTTGAGGTAATGCTTTCACTCCCCCTTGACTATTTCTTTCTGCAATTTGAGTGCTGTGAGTATGATTTGTTCTTATTCATTATGTGGGAATCCAGTCCTCTGATTATTTTGCACTTAAGGGTGAGATTTCAAGGTTCTCGAGGACCTATTAGTTTGCCTTCCAAGAAAACCAAAAAAGTTCGAACTCAATAA

Protein sequence

MTRGWAGKKGQVACSRINSHVAILKELLSERVSVSERKPRQTMNVPDRYERFVVPEGAKKVSYERDTKIMNAATFVLEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDALKYELEVMLSLPLDYFFLQFECCEYDLFLFIMWESSPLIILHLRVRFQGSRGPISLPSKKTKKVRTQ

Homology

[Close]

BLAST of CmUC09G163710 vs. NCBI nr
Match: TYK10426.1 (DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucumis melo var. makuwa])

HSP 1 Score: 255.8 bits (652), Expect = 3.3e-64
Identity = 133/162 (82.10%), Postives = 137/162 (84.57%), Query Frame = 0


Query: 43  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFVLEREDHTIGNILRMQLHRDDNVLFAG 102
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATF+LEREDHTIGNILRMQLHRDDNVLFAG
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60

Query: 103 YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDALKYELEVMLSLPLDYFFLQF 162
           YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELD LKYELEVMLSLPLD+FF   
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEVMLSLPLDFFF--- 120

Query: 163 ECCEYDLFLFIMWESSPLIILHLRVRFQGSRGPISLPSKKTK 205
                            L  + +RVRFQGSRGPIS PSKKTK
Sbjct: 121 ----------------SLSAIGVRVRFQGSRGPISFPSKKTK 143

[Close]

BLAST of CmUC09G163710 vs. NCBI nr
Match: KAA0058617.1 (DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucumis melo var. makuwa])

HSP 1 Score: 230.7 bits (587), Expect = 1.1e-56
Identity = 117/140 (83.57%), Postives = 122/140 (87.14%), Query Frame = 0


Query: 43  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFVLEREDHTIGNILRMQLHRDDNVLFAG 102
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATF+LEREDHTIGNILRMQLHRDDNVLFAG
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60

Query: 103 YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDALKYELEVMLSLPLDYFFLQF 162
           YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELD LKYELEVMLSLPLD+FF   
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEVMLSLPLDFFFSLC 120

Query: 163 ECCEYDLFLFIMWESSPLII 183
              E           +P+I+
Sbjct: 121 NWSEVSRICSYSLRGNPVIL 140

[Close]

BLAST of CmUC09G163710 vs. NCBI nr
Match: KAG6593293.1 (DNA-directed RNA polymerases II, IV and V subunit 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 213.8 bits (543), Expect = 1.4e-51
Identity = 107/122 (87.70%), Postives = 112/122 (91.80%), Query Frame = 0


Query: 27  LLSERVSVSERKPRQTMNVPDRYERFVVPEGAKKVSYERDTKIMNAATFVLEREDHTIGN 86
           L SE V   E +  +TMNVPDRYERFVVPEGAKKVSYERDTKIMNAATF++EREDHTIGN
Sbjct: 2   LFSEEVQFQEEE--KTMNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGN 61

Query: 87  ILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDALKYE 146
           I+RMQLHRDDNVLFA YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELD LKYE
Sbjct: 62  IIRMQLHRDDNVLFAAYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYE 121

Query: 147 LE 149
           LE
Sbjct: 122 LE 121

[Close]

BLAST of CmUC09G163710 vs. NCBI nr
Match: XP_008461312.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucumis melo])

HSP 1 Score: 213.4 bits (542), Expect = 1.9e-51
Identity = 105/110 (95.45%), Postives = 107/110 (97.27%), Query Frame = 0


Query: 43  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFVLEREDHTIGNILRMQLHRDDNVLFAG 102
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATF+LEREDHTIGNILRMQLHRDDNVLFAG
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60

Query: 103 YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDALKYELEVMLS 153
           YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELD LKYELE  +S
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEIS 110

[Close]

BLAST of CmUC09G163710 vs. NCBI nr
Match: XP_004135939.1 (DNA-directed RNA polymerases II, IV and V subunit 11 isoform X3 [Cucumis sativus] >KAE8646398.1 hypothetical protein Csa_016830 [Cucumis sativus])

HSP 1 Score: 213.0 bits (541), Expect = 2.5e-51
Identity = 105/110 (95.45%), Postives = 107/110 (97.27%), Query Frame = 0


Query: 43  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFVLEREDHTIGNILRMQLHRDDNVLFAG 102
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATF+LEREDHTIGNILRMQLHRDDNVLFAG
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60

Query: 103 YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDALKYELEVMLS 153
           YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELD LKYELE  +S
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEIS 110

[Close]

BLAST of CmUC09G163710 vs. ExPASy Swiss-Prot
Match: Q38859 (DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana OX=3702 GN=NRPB11 PE=1 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 3.2e-46
Identity = 88/106 (83.02%), Postives = 98/106 (92.45%), Query Frame = 0


Query: 43  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFVLEREDHTIGNILRMQLHRDDNVLFAG 102
           MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F +EREDHTIGNI+RMQLHRD+NVLFAG
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 103 YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDALKYELE 149
           YQLPHPLKY+I+VRI T SQSSPMQAYNQAINDLDKELD LK + E
Sbjct: 61  YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFE 106

[Close]

BLAST of CmUC09G163710 vs. ExPASy Swiss-Prot
Match: Q86JJ5 (DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium discoideum OX=44689 GN=polr2j PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.4e-25
Identity = 50/102 (49.02%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 43  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFVLEREDHTIGNILRMQLHRDDNVLFAG 102
           MN PDR+E FV+P+GAKKV+  RDTKI NA+ F + +EDHTIGN++RMQL  D +++FAG
Sbjct: 1   MNAPDRFELFVLPDGAKKVTMVRDTKIPNASMFTILKEDHTIGNLIRMQLIADQDIIFAG 60

Query: 103 YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDALK 145
           Y++PHPL++ + +RIQT + ++P++   +++  L +E  +L+
Sbjct: 61  YRMPHPLEHNVNIRIQTNNNTNPLECVQKSMECLSREFTSLE 102

[Close]

BLAST of CmUC09G163710 vs. ExPASy Swiss-Prot
Match: Q32P79 (DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus OX=9913 GN=POLR2J PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.6e-24
Identity = 50/109 (45.87%), Postives = 75/109 (68.81%), Query Frame = 0


Query: 43  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFVLEREDHTIGNILRMQLHRDDNVLFAG 102
           MN P  +E F++ EG KK++  +DTK+ NA  F + +EDHT+GNI++ QL +D  VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 103 YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDALKYELEVML 152
           Y++PHPL+++I++R+QT    SP +A+  AI DL  EL  L+    V +
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAI 109

[Close]

BLAST of CmUC09G163710 vs. ExPASy Swiss-Prot
Match: P52435 (DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens OX=9606 GN=POLR2J PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.6e-24
Identity = 50/109 (45.87%), Postives = 75/109 (68.81%), Query Frame = 0


Query: 43  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFVLEREDHTIGNILRMQLHRDDNVLFAG 102
           MN P  +E F++ EG KK++  +DTK+ NA  F + +EDHT+GNI++ QL +D  VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 103 YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDALKYELEVML 152
           Y++PHPL+++I++R+QT    SP +A+  AI DL  EL  L+    V +
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAI 109

[Close]

BLAST of CmUC09G163710 vs. ExPASy Swiss-Prot
Match: O08740 (DNA-directed RNA polymerase II subunit RPB11 OS=Mus musculus OX=10090 GN=Polr2j PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.5e-24
Identity = 49/102 (48.04%), Postives = 73/102 (71.57%), Query Frame = 0


Query: 43  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFVLEREDHTIGNILRMQLHRDDNVLFAG 102
           MN P  +E F++ EG KK++  +DTK+ NA  F + +EDHT+GNI++ QL +D  VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 103 YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDALK 145
           Y++PHPL+++I++R+QT    SP +A+  AI DL  EL  L+
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLE 102

[Close]

BLAST of CmUC09G163710 vs. ExPASy TrEMBL
Match: A0A5D3CJ64 (DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00720 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.6e-64
Identity = 133/162 (82.10%), Postives = 137/162 (84.57%), Query Frame = 0


Query: 43  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFVLEREDHTIGNILRMQLHRDDNVLFAG 102
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATF+LEREDHTIGNILRMQLHRDDNVLFAG
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60

Query: 103 YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDALKYELEVMLSLPLDYFFLQF 162
           YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELD LKYELEVMLSLPLD+FF   
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEVMLSLPLDFFF--- 120

Query: 163 ECCEYDLFLFIMWESSPLIILHLRVRFQGSRGPISLPSKKTK 205
                            L  + +RVRFQGSRGPIS PSKKTK
Sbjct: 121 ----------------SLSAIGVRVRFQGSRGPISFPSKKTK 143

[Close]

BLAST of CmUC09G163710 vs. ExPASy TrEMBL
Match: A0A5A7UV57 (DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G00860 PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 5.5e-57
Identity = 117/140 (83.57%), Postives = 122/140 (87.14%), Query Frame = 0


Query: 43  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFVLEREDHTIGNILRMQLHRDDNVLFAG 102
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATF+LEREDHTIGNILRMQLHRDDNVLFAG
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60

Query: 103 YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDALKYELEVMLSLPLDYFFLQF 162
           YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELD LKYELEVMLSLPLD+FF   
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEVMLSLPLDFFFSLC 120

Query: 163 ECCEYDLFLFIMWESSPLII 183
              E           +P+I+
Sbjct: 121 NWSEVSRICSYSLRGNPVIL 140

[Close]

BLAST of CmUC09G163710 vs. ExPASy TrEMBL
Match: A0A1S3CFN3 (DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Cucumis melo OX=3656 GN=LOC103499938 PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 9.1e-52
Identity = 105/110 (95.45%), Postives = 107/110 (97.27%), Query Frame = 0


Query: 43  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFVLEREDHTIGNILRMQLHRDDNVLFAG 102
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATF+LEREDHTIGNILRMQLHRDDNVLFAG
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60

Query: 103 YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDALKYELEVMLS 153
           YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELD LKYELE  +S
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEIS 110

[Close]

BLAST of CmUC09G163710 vs. ExPASy TrEMBL
Match: A0A6J1KX24 (DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111497917 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 2.9e-50
Identity = 101/106 (95.28%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 43  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFVLEREDHTIGNILRMQLHRDDNVLFAG 102
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATF++EREDHTIGNI+RMQLHRDDNVLFA 
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAA 60

Query: 103 YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDALKYELE 149
           YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELD LKYELE
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELE 106

[Close]

BLAST of CmUC09G163710 vs. ExPASy TrEMBL
Match: A0A6J1H8G6 (DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461018 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 2.9e-50
Identity = 101/106 (95.28%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 43  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFVLEREDHTIGNILRMQLHRDDNVLFAG 102
           MNVPDRYERFVVPEGAKKVSYERDTKIMNAATF++EREDHTIGNI+RMQLHRDDNVLFA 
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAA 60

Query: 103 YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDALKYELE 149
           YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELD LKYELE
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELE 106

[Close]

BLAST of CmUC09G163710 vs. TAIR 10
Match: AT3G52090.1 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 186.4 bits (472), Expect = 2.3e-47
Identity = 88/106 (83.02%), Postives = 98/106 (92.45%), Query Frame = 0


Query: 43  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFVLEREDHTIGNILRMQLHRDDNVLFAG 102
           MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F +EREDHTIGNI+RMQLHRD+NVLFAG
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 103 YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDALKYELE 149
           YQLPHPLKY+I+VRI T SQSSPMQAYNQAINDLDKELD LK + E
Sbjct: 61  YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFE 106

[Close]

BLAST of CmUC09G163710 vs. TAIR 10
Match: AT3G52090.2 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 170.6 bits (431), Expect = 1.3e-42
Identity = 88/136 (64.71%), Postives = 98/136 (72.06%), Query Frame = 0


Query: 43  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFVLEREDHTIGNILRMQLHRDDNVLFAG 102
           MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F +EREDHTIGNI+RMQLHRD+NVLFAG
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 103 YQLPHPLKYRILVR------------------------------IQTASQSSPMQAYNQA 149
           YQLPHPLKY+I+VR                              I T SQSSPMQAYNQA
Sbjct: 61  YQLPHPLKYKIIVRDPKDWFRNLKVVYGCLETVNISWFKLLVLTIHTTSQSSPMQAYNQA 120

The following BLAST results are available for this feature:

BLAST of CmUC09G163710 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK10426.1	3.3e-64	82.10	DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucumis melo var. mak...	[more]
KAA0058617.1	1.1e-56	83.57	DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucumis melo var. mak...	[more]
KAG6593293.1	1.4e-51	87.70	DNA-directed RNA polymerases II, IV and V subunit 11, partial [Cucurbita argyros...	[more]
XP_008461312.1	1.9e-51	95.45	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucumis me...	[more]
XP_004135939.1	2.5e-51	95.45	DNA-directed RNA polymerases II, IV and V subunit 11 isoform X3 [Cucumis sativus...	[more]

BLAST of CmUC09G163710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38859	3.2e-46	83.02	DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana OX=...	[more]
Q86JJ5	2.4e-25	49.02	DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium discoideum OX=4468...	[more]
Q32P79	1.6e-24	45.87	DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus OX=9913 GN=POLR2J PE=...	[more]
P52435	1.6e-24	45.87	DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens OX=9606 GN=POLR2J...	[more]
O08740	3.5e-24	48.04	DNA-directed RNA polymerase II subunit RPB11 OS=Mus musculus OX=10090 GN=Polr2j ...	[more]

BLAST of CmUC09G163710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CJ64	1.6e-64	82.10	DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Cucumis melo var. m...	[more]
A0A5A7UV57	5.5e-57	83.57	DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Cucumis melo var. m...	[more]
A0A1S3CFN3	9.1e-52	95.45	DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Cucumis melo OX=365...	[more]
A0A6J1KX24	2.9e-50	95.28	DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 OS=Cucurbit...	[more]
A0A6J1H8G6	2.9e-50	95.28	DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 OS=Cucurbit...	[more]

BLAST of CmUC09G163710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52090.1	2.3e-47	83.02	DNA-directed RNA polymerase, RBP11-like	[more]
AT3G52090.2	1.3e-42	64.71	DNA-directed RNA polymerase, RBP11-like	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 126..153
None	No IPR available	PANTHER	PTHR13946	DNA-DIRECTED RNA POLYMERASE I,II,III	coord: 43..149
None	No IPR available	PANTHER	PTHR13946:SF16	DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11	coord: 43..149
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 43..153 e-value: 4.0E-47 score: 160.7
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 43..147
IPR009025	DNA-directed RNA polymerase, RBP11-like dimerisation domain	PFAM	PF13656	RNA_pol_L_2	coord: 73..144 e-value: 2.2E-24 score: 85.0
IPR008193	DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site	PROSITE	PS01154	RNA_POL_L_13KD	coord: 77..108
IPR037685	RNA polymerase RBP11	CDD	cd06926	RNAP_II_RPB11	coord: 55..144 e-value: 1.6072E-47 score: 149.28

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC09G163710.1	CmUC09G163710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006366	transcription by RNA polymerase II
cellular_component	GO:0016020	membrane
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0001055	RNA polymerase II activity
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity