CmUC09G160740 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC09G160740
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	DNA-directed RNA polymerase I subunit rpa49
Location	CmU531Chr09: 611432 .. 618928 (-)
RNA-Seq Expression	CmUC09G160740
Synteny	CmUC09G160740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGCATTAGCTGTCAGTTTTTGGACTAAGATCAAAATCACTGTGCTAACCTTTGGTTGCAAGTATCACCCTTTATAATTGACCATTCAAATTTCAAGTATATGTTTTATAATATTTAAGCAAGTTAATTCTCAAGTTTTGTTTTAAACAATTCATTTTAATGTTTAAAACTATTGGCTATAGTTGGTTTTGTATTTTTCACACGTGTCTGTTTCTTTCTTTCAGAAATTGGGATTTCTTTTGCTTGTTATGTTTTTATCAAATGAATTGAAGCCTTTGCATTGTTGACATTGGAGTGGGTGTATCGTAGAATTTGAGATTTTCACTTATCGAACTACAATTATTCACTATGGCTTGTGGGGAGAATGAACGTGATCTCTTCCATCAATGCCCTAATGTTTCTTTTTATTACCCTTTACTAGTTCGTTCTTACAGTTTATTGATGTCAAAATTTATACAGATGAAATCACGGCTTTTACACGATACAAACAATGGATTTATTTGAAATGGAGAAGAACATGACTTGCAAGAGATAAAACTTGCAAAACGACGTGGTGTTTGCTACATATACTCTGACGCTTAAGTTAGAGAGTAAAAGAATGTGGAAGTTAAGTTGAAGAATAAAATTCAATTTAACTCGTATGGAGGCATAATGATAGATTCAATTTAACCCTAAACCAAATAATACAAACTAAAATTAAATAATTAGACAATTAAATGTAAGACAACAATAAATATATTCATAAACTTGATAAATCAAGTTTAGTGTTAATTAATTATTTAATCACTTAAAATAAAATAAATACAGTATTTAAACTAAACGAAACTATTTATTTTAAGAATGAACTATTAATTAGATAAATATAAATTAATTATGATATTATTAACAGTAATAAAATTTTATATTAAATGGTTAATGTAATCTAAAATATTGATTGTAAACGTTTAGGTGAAATTTATTAATTCAAAATAGTATATTTGTGTTTGATAATTAATTAAAATTAGCAGTAATGACAGGTTTATATTAATCAATTAACTAGGCTTTATCCTTGATTTCCCAGGTATAAAAATCTCACATATTTAGAAGATATTAAAACCCATGTCATATGAGTTTTAAAATTCCTAATAACATCACATAGGGATATTGACTGTTTGAAATCATATAAAACAAACAAGATATCAAATGTCACAAAACTCGTGAAACAAGCGGGGCTTAATTGTTTTCCATCATTTATGCTAATGGTAAATGTATGTTTAAACGTTTTTTCTTAATATATTTTTAAACGGTTTTAAAAGCTTGCAAGTATTAGTGAAATCCTATCAAATATCTTATATTATTGAAACTAAGCCTAAAGTTGAGGACTATGTTTTGAAATCTAGCCTTATGAAAATATAATATTACAAATTTGATATCTATAGTTCGTAGAAAGTTGTAATTTAGTTCGTATGAATTTAAAAATTAAAATTTCAAAAATTTTAAAGTATGACAAGGGATGAGAGATAGAACCTCTAATATAAGGAGCACATGTCAATTACCATTGAGTTAAACTTATTTTTGTGTTATATTATAGTCCGATAAAACCATTATAAATAGACCATACTCTAATAAACTAAGGTAGCAAATTATAGGTTAGATTTCAATTTTGGTCCCCATTATCTGGAGAGAGTTAGAAGTGAAAATTTGAATGGCAATGAAAAGGTGGAACTTAACTAATTATAAGTCTTTTAAATATTTGCAACGACCCAACTTCCTAGGATTTATATTAGGCCGTTACCACATGCATGCAAACATCTTAAAACGACTATTTTCATAATTTAGACTAAAATCGAAAGAATTGTATAAACTAAATAATTTTTATTAAATCTGGAAAACTAAAAATTTGTTATCGAGGCACCCTTAACATTTAAAACAAAACTTTAAATTTGTATAAACAACTAGTAGTGATAAAAGAAATTACATTCTGTTTCACGCATTAAGGCTATAAATCTAAAACATGAAAGCATGTGCGAAAAGCATCTATATGTCCTTGCCTTTATGTCCTATATGTCCCAATGACATGGTCACAAATTTTTCTTATCATACGCCTATATGTCCTTGCCTTTATCTGAACAATGTAACATAGGGTGAGCATAAAAATACTCAGTAAGTAACCCTACTACTATGATTGTGTAATCCCATGCAAACATGAATTGAGGCTCCATACTGATGGAACCTAAAGATTTTTTGTTCTTGGCTCACTCTGTCTCCTTTTCCCTAAACGTGTCTTAATTTCTTGCACATGAGATCCGAGGTATAACTTTTCTATAATAGAACCCTCTAGGTATGCATCATTTTCATACAGCGCAGATCATCTATAACAATGTTGGGATGTGCACCACTTACGTCCACATAATTAAGTGTACACCACTTACGTATACACATAACCCAATTGGGGTGCACGCTAAATATGTTGACATGCACCACTTTCGTGCAGTCAAATACTATGGGAAGGCAATGAGATTGCACCGAAACTCATAATTTCATGCAACATTCACATATGTGCGAGTCTCACATAAAATTTCGTAAATAATGTCATGCTAAAGAGTCTTGACAAACATGCATAATATCATAACAACGAATCGACCATAGTACATCACTTTCATGAACCAGTTCAAGTACGTAACAAAACATTCACAATTTATAATGAATTACATGACATTTGTACTTTCAAAAAAAAAAAAAAGCTTAAAAACATGTATATCAACAAATATCTAATTTTTTCGCCTGACTCTAAATCATTCTAGCAGTAAAATTACTTACCTCAAATTTCAATCCAAACTATTTTTCATCTTTGGATAAAATTATTGAATTAAACTCTAAAATTATGAACCTTCAATGCTAAGTGCAAATCCTAACCACAAATTAATCAAAAGTCCAATCGACCTTACGGAAACGGTGACGATGGCATGTTGGCACGTTCCACGGCGAGTTGGAGGTGATCGGCGGGGCTGAGAACGACAGAGGGAGAGAGAGAGGCGTCCGGAGAGGAAGAATAAAGAAAAAGATGATTTTTTTTAAACCTTGCATGCATATTGAAGGCCTGTATATATCCCTTTACATTTCTCAAAACAAAATATACAATTTATTTAATATATTTTTCAACACTTTAAATTCGATATTTTTCAAACACCTAAGATAGTTTATTTCATTCAAAAAAAAAAAAAAAAAACAAAATCACCGGATTTAAATTCCAATCTCTTAAATTAACCAAATTCTAAACCTCACAAGTTTCTAAATATTCAAATTAAATTCAACTTTTAAATTTCCAATCGAAATCTTATCTTGCTTACTTTAAATTGAAATAATCCAAGATAATAAATTCTAAATTATCTGAAAACTTGGGATGTAAAAATATTAACGATAGAGATTAATATTAACGACGAAAAAAGAGTATTTAGTGAAAATTTGAGATTAAAAGTGTAGATCATGAACATATGAACTAAATTGAAACAAAACTCAAATCACAAAATTAAATTATAGAAAAATTATTATAAATATAAAAAATATCAGATCATTTACAAATATAACAAAATGTTATTATATTTATGATAGACTGTAATAAACTTAGATAGATAGACATCTATATGCATCTAACGCTAAAGTGATAGATGCCTATTTAAATTTATCGTAGTCTATCATATATAAAAATTAAAATTTTGCTATATTTATAATTATTTTAAACAAATTTTTTATTTTTTGAAAACATTCATAAATTATAAAATTTGGAAATGTAGAGACTATGTTGAAACGAAATTGAACTAAATTTTGTAATATTTTTGAAATCTACGACCTAATGAAAACTAGGTCCAAAGTTTTTTTTTTTTAAGATATTTTTCCCTCCTAATTTTATCAGATGGGCTAAATTCGTAATTAAACCCAAAAACAGAAAAAGAGAGAAAAAGAGAAAGAAAAGAAAGCCCTTAAACCCCTCGTTCTCGTTCCTACCTTCTCTCTTTCTTTCCCGCCGCTCATTTTCTTTCCCTCCTCCTCTCCCTCTCTCTCATATTTTCCGCCGCCGCACACCCACCGGTACGCCCCTCAGGCGCCACGCCAGTCACAAATCGCCGCCGATGTATGCCTGGATCAAATGTTTTTTCTTTTCTTTGTTATTTTGTTGATTCAAGATTCATCTAGTAAACTTGGAGCAATTCTAATGGTTTATTTTTCATTTGTTCTTTTCATGGACCGACCCGACCCTTCGTTGCCCTCGTTTCCTAATTCAACGTGTCTTGCTTCAACCACTGTTGCCGCTCCCAGTACCGACGGCAAATCAGTCGCCGCCCTCGTCCACTGCTGCGGGACTGTAATTCCGGAAGCCGCTTACTCCCGGTTCGTGTTCGACCGAGTAACTTTTCGAAATTCAGAGATCGTCTACGGAATCAATGACGGAAGACACGAAATCTCTTGAATTAGAAGAAAATCATAACGCAGAACCAGACGCAAACTCACTGTCTCCAGCGAAGAAGAAGAAGAAGAGTGAAAAGAAGAAGAAACGAGTTCCATCAGTGAATGCTAAAATCCAAGTTCTCAGCAACCATCCCCAGAAAAGTCCGCCGCTAGTTGGTTATTTCCCGTCTGGGTTTGATCCTCACAAGGTTGCCGATGAGGAAGCAGCTGAGGAACAGAATTCCGTTAGGGCTAGGGTTTACAAGCACAAGAACAAACCAAATAGGATGCAGCTGGTTGTGAGTCCAACAGGGTCGAATGTGGATTTTGTCGGTACCAATTATTTGGGCGAGGCTACCGCTGGGAAACAGCATTGCACCTATGCTCTCGGTGTTCTCGATAAGGCCACCCAAAGCTTAAAGATAGTGCCTATTGCATCAAATATGGTACTTTATATTCTTGATAATGAATGTAGAGAATTAAGCATTGTGAAATATTGAATTCTACTTGATGCGTGTTTGTGTATATTCACTGAGGTTACACATTATTAGTATGTTTTCTTTTGAATGAATTTGGCTCCTAGATCTGCTCTGCTCGACCTTTCTCTGGAAAGACCACTAATACGGGTTGTGATCTGTTTTCATAGAGCTAGGAGATTACAATCAGTCAAGTTTTGGCTGATTATTTTGGTGCTATATATATATTTTCTTCGTTTTCGTTTTGCTCCAAACTCAATGCAGAGATTTCTAGAACTAGGCTTACCTTTGTGATGCATTTTATCTACTTTACAAAATGTTAATGTTGTAACTAATAATCATAATTGTGTTGCTAAGTTTGATATTAACGCCTGCAGATATTTAGATTAGACCCAAAAGTCAGAGGTTCAGACGTTTCTGAAAATGAATCCCCAAGTGTTGCAAATGAAGAGCTTTCTGTGCAGGAGAAAGCTGATAGAATGAAAGAGCTCACCAATCTCTATGGAACAAAGAGGTCAAAGATGCAGGTAGAAATTGAATCCTGGAATTGCTCTCTTTAGTGCTTCAGCAGCCAACTTTCACTTATGGTTGGAATGATTTTTTTTTAAAGTGCCTTATTGCATGTTTGGGAGTGATTTTGAAAGGGTTAAAATCACTTTTGTCATATTTAAAATTACTCCAAAACACGTCTTTAATCACTCAAAATCAATTTAATATTTAGTTTTACACTTTTAAATGCAATTCTCATATCATCAAAATTGGTATTGAATGATTAAAAACATATTTAAGGGTAATTTTACAAATGAAAAAAGTGGTTTAAATTATTTGAGAATCACTCCCAAACATGGCTAGTATTAACGAATGTTGGACTTAACCTTATCAGCAGGTGAGCAGAATTTTGGGTGGCATGTTATCACAAAAAAGGATTACTTCTTTTCTATTTACCAGTTTTGTTGCTTTTAATTGGTTTTGGATTTGGATGGGATCTGTTCCACTTTTCAATATCATCATCATCTTTACCCTTTACTTGAGATGTTTGACCATGACCCATAAGTTAATTAAACTTTGTTTTGGATGATGAAGTCACTTTCAAATGGCAGTTTCAGGAAGTAGCAACAAATGGTTTGATATATGTTAATTTTGTTGCAGGCATTGAAGCTGCATGCATTGAAGCAAGAGGATGATCCTGATACCAAGAAGGATCTAGATGTGAGAATGAAAAATGTAGTGGTAAACAAAGAGGCCTTGGAGGGTACGCATGCAGAAATTGCTCGTAATATACCAATGTATAATGCTTCTGCAACTACTCCAGAAGAAGCTTACCCACTCGATAAGATTATCCTCAAGGGAGAATGGAGTTTTCTGGAAGATCTTTACTTCCGTTTGCAAGAAACAGCTGAAATTAGTGCTAATTATCCATCCTTTGTCCGCAACAGAATTTATAAATTGCAAGACATTCAGGTATGGTGTCAAGAAGGTTCTACTTGTTACCTTTATGAATATTCTGAGATAAAACATTCTTCATTTCTGATACATATTCATGAATCTTGTGGATGATTGATATCGTTTATCTAATATGATGCCTTGTGTCCATTGATTCTCAAATTAAGCTATCTTGTCTTGTTGATTCACTGGTGTTTTCAATCCGGAACGACTGCGTGCTTTCTGAAACTGCTTGACCTTTATGTTTGTGTACGGAGTTTGATTCTTTGCCTTTATTTTTTGTGGAAAAGGAGCTCATTCTTAAGTCTTAACAAGCACTTGTTATCTACTTATTTACTATCGAATGCTTGTTCTAAGTTGTATGGATTCTTTCAGTAGCCGTACTTTTCCATTTTTTAAACAAAGTATTATTGTTTTGTTGAAAAGGAGCTCGCTCTTTACCAAACAAGCACTGTTTATTCAGGGTTTTCTACTTTTCGTTCATTTGTATTGAATCCTTGTTTATGTCAAAATCATCTTAGGACGAGGAAGAGAAGAAGAAGCTGTGCTGCATATTTTCATATATCACTCATCTAATAAAGTATAAGGATCAGCATTCTGTGGGTGATGTTTCTTCTGCAAAGGGCCATAAAATTCCTAGCATGCTACGCCAAAAGTTCTCCTCCATGTTTCCAACTTCCGATTCGAGGAGAATTTCAACGGAGAAAAGTAATCTTCTCATTAGCCACGTTTTGGTGCTCACACTATTTGTCGACAAATTCAGCAGTGATCCAGCAGACATAGCAAAGGATCTGAGAACCAGTCCTTATGATCTAAGGCTCCATTTTGATAACTTGGGTTGCAAGTTTATACGCAAGAACAATCTTTCATTGGTTACACTTCCTATACCCCTTCAATTTCCAGACTTGAGGCAAAAGAGACGAAGATAGGTAATTCGAAGAAGCTGAAATCTTGTAGGCAGCAAAGTTGGAACAATTTTGTGGAGTAAAACAGGTAAATGGTCATTTTTTGTAATTCAGATGCTATTTCTTTCATATTGCAAATGCAAACTTGTTGTTTCTACGAAATAGCTCTGCATAGAATGGTGTTTTATTATTTGGAAGTTGGAACTTTGGATGATGAGGCTTATTTGGAAACGAGTCAAATGGC

mRNA sequence

ATGGCGTGTCTTGCTTCAACCACTGTTGCCGCTCCCAGTACCGACGGCAAATCAGTCGCCGCCCTCGTCCACTGCTGCGGGACTGTAATTCCGGAAGCCGCTTACTCCCGGTTCGTGTTCGACCGAAGATCGTCTACGGAATCAATGACGGAAGACACGAAATCTCTTGAATTAGAAGAAAATCATAACGCAGAACCAGACGCAAACTCACTGTCTCCAGCGAAGAAGAAGAAGAAGAGTGAAAAGAAGAAGAAACGAGTTCCATCAGTGAATGCTAAAATCCAAGTTCTCAGCAACCATCCCCAGAAAAGTCCGCCGCTAGTTGGTTATTTCCCGTCTGGGTTTGATCCTCACAAGGTTGCCGATGAGGAAGCAGCTGAGGAACAGAATTCCGTTAGGGCTAGGGTTTACAAGCACAAGAACAAACCAAATAGGATGCAGCTGGTTGTGAGTCCAACAGGGTCGAATGTGGATTTTGTCGGTACCAATTATTTGGGCGAGGCTACCGCTGGGAAACAGCATTGCACCTATGCTCTCGGTGTTCTCGATAAGGCCACCCAAAGCTTAAAGATAGTGCCTATTGCATCAAATATGATATTTAGATTAGACCCAAAAGTCAGAGGTTCAGACGTTTCTGAAAATGAATCCCCAAGTGTTGCAAATGAAGAGCTTTCTGTGCAGGAGAAAGCTGATAGAATGAAAGAGCTCACCAATCTCTATGGAACAAAGAGGTCAAAGATGCAGGCATTGAAGCTGCATGCATTGAAGCAAGAGGATGATCCTGATACCAAGAAGGATCTAGATGTGAGAATGAAAAATGTAGTGGTAAACAAAGAGGCCTTGGAGGGTACGCATGCAGAAATTGCTCGTAATATACCAATGTATAATGCTTCTGCAACTACTCCAGAAGAAGCTTACCCACTCGATAAGATTATCCTCAAGGGAGAATGGAGTTTTCTGGAAGATCTTTACTTCCGTTTGCAAGAAACAGCTGAAATTAGTGCTAATTATCCATCCTTTGTCCGCAACAGAATTTATAAATTGCAAGACATTCAGGACGAGGAAGAGAAGAAGAAGCTGTGCTGCATATTTTCATATATCACTCATCTAATAAAGTATAAGGATCAGCATTCTGTGGGTGATGTTTCTTCTGCAAAGGGCCATAAAATTCCTAGCATGCTACGCCAAAAGTTCTCCTCCATGTTTCCAACTTCCGATTCGAGGAGAATTTCAACGGAGAAAAGTAATCTTCTCATTAGCCACGTTTTGGTGCTCACACTATTTGTCGACAAATTCAGCAGTGATCCAGCAGACATAGCAAAGGATCTGAGAACCAGTCCTTATGATCTAAGGCTCCATTTTGATAACTTGGGTTGCAAGTTTATACGCAAGAACAATCTTTCATTGGTTACACTTCCTATACCCCTTCAATTTCCAGACTTGAGGCAAAAGAGACGAAGATAGGTAATTCGAAGAAGCTGAAATCTTGTAGGCAGCAAAGTTGGAACAATTTTGTGGAGTAAAACAGGTAAATGGTCATTTTTTGTAATTCAGATGCTATTTCTTTCATATTGCAAATGCAAACTTGTTGTTTCTACGAAATAGCTCTGCATAGAATGGTGTTTTATTATTTGGAAGTTGGAACTTTGGATGATGAGGCTTATTTGGAAACGAGTCAAATGGC

Coding sequence (CDS)

ATGGCGTGTCTTGCTTCAACCACTGTTGCCGCTCCCAGTACCGACGGCAAATCAGTCGCCGCCCTCGTCCACTGCTGCGGGACTGTAATTCCGGAAGCCGCTTACTCCCGGTTCGTGTTCGACCGAAGATCGTCTACGGAATCAATGACGGAAGACACGAAATCTCTTGAATTAGAAGAAAATCATAACGCAGAACCAGACGCAAACTCACTGTCTCCAGCGAAGAAGAAGAAGAAGAGTGAAAAGAAGAAGAAACGAGTTCCATCAGTGAATGCTAAAATCCAAGTTCTCAGCAACCATCCCCAGAAAAGTCCGCCGCTAGTTGGTTATTTCCCGTCTGGGTTTGATCCTCACAAGGTTGCCGATGAGGAAGCAGCTGAGGAACAGAATTCCGTTAGGGCTAGGGTTTACAAGCACAAGAACAAACCAAATAGGATGCAGCTGGTTGTGAGTCCAACAGGGTCGAATGTGGATTTTGTCGGTACCAATTATTTGGGCGAGGCTACCGCTGGGAAACAGCATTGCACCTATGCTCTCGGTGTTCTCGATAAGGCCACCCAAAGCTTAAAGATAGTGCCTATTGCATCAAATATGATATTTAGATTAGACCCAAAAGTCAGAGGTTCAGACGTTTCTGAAAATGAATCCCCAAGTGTTGCAAATGAAGAGCTTTCTGTGCAGGAGAAAGCTGATAGAATGAAAGAGCTCACCAATCTCTATGGAACAAAGAGGTCAAAGATGCAGGCATTGAAGCTGCATGCATTGAAGCAAGAGGATGATCCTGATACCAAGAAGGATCTAGATGTGAGAATGAAAAATGTAGTGGTAAACAAAGAGGCCTTGGAGGGTACGCATGCAGAAATTGCTCGTAATATACCAATGTATAATGCTTCTGCAACTACTCCAGAAGAAGCTTACCCACTCGATAAGATTATCCTCAAGGGAGAATGGAGTTTTCTGGAAGATCTTTACTTCCGTTTGCAAGAAACAGCTGAAATTAGTGCTAATTATCCATCCTTTGTCCGCAACAGAATTTATAAATTGCAAGACATTCAGGACGAGGAAGAGAAGAAGAAGCTGTGCTGCATATTTTCATATATCACTCATCTAATAAAGTATAAGGATCAGCATTCTGTGGGTGATGTTTCTTCTGCAAAGGGCCATAAAATTCCTAGCATGCTACGCCAAAAGTTCTCCTCCATGTTTCCAACTTCCGATTCGAGGAGAATTTCAACGGAGAAAAGTAATCTTCTCATTAGCCACGTTTTGGTGCTCACACTATTTGTCGACAAATTCAGCAGTGATCCAGCAGACATAGCAAAGGATCTGAGAACCAGTCCTTATGATCTAAGGCTCCATTTTGATAACTTGGGTTGCAAGTTTATACGCAAGAACAATCTTTCATTGGTTACACTTCCTATACCCCTTCAATTTCCAGACTTGAGGCAAAAGAGACGAAGATAG

Protein sequence

MACLASTTVAAPSTDGKSVAALVHCCGTVIPEAAYSRFVFDRRSSTESMTEDTKSLELEENHNAEPDANSLSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKSPPLVGYFPSGFDPHKVADEEAAEEQNSVRARVYKHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRMKELTNLYGTKRSKMQALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHAEIARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKLQDIQDEEEKKKLCCIFSYITHLIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSDSRRISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPDLRQKRRR

Homology

[Close]

BLAST of CmUC09G160740 vs. NCBI nr
Match: XP_038896156.1 (DNA-directed RNA polymerase I subunit rpa49 [Benincasa hispida])

HSP 1 Score: 793.9 bits (2049), Expect = 7.9e-226
Identity = 410/439 (93.39%), Postives = 420/439 (95.67%), Query Frame = 0


Query: 49  MTEDTKSLELEENHNAEPDANSLSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKSPPLV 108
           M EDTKSLELEENH AE D NS SPAKKKKKSEKKKKRVPSVNAKIQVL NHPQK+PP+V
Sbjct: 1   MAEDTKSLELEENHYAERDTNSESPAKKKKKSEKKKKRVPSVNAKIQVLGNHPQKTPPIV 60

Query: 109 GYFPSGFDPHKVADEEAAEEQNSVRARVYKHKNKPNRMQLVVSPTGSNVDFVGTNYLGEA 168
           GYFPSGFDPHK AD    EEQNSVRARVYKHKNKPNRMQLVVSPTGSNVDFVGTNYLGEA
Sbjct: 61  GYFPSGFDPHKDAD----EEQNSVRARVYKHKNKPNRMQLVVSPTGSNVDFVGTNYLGEA 120

Query: 169 TAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQE 228
           TAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQE
Sbjct: 121 TAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQE 180

Query: 229 KADRMKELTNLYGTKRSKMQALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHAEI 288
           KADRM+ELT LYGTK+SK QA KLHALKQEDDPDTKKDLDVRMKNVVVN EALEGT AEI
Sbjct: 181 KADRMRELTVLYGTKKSKKQAQKLHALKQEDDPDTKKDLDVRMKNVVVNIEALEGTQAEI 240

Query: 289 ARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL 348
           ARNIP YNASATTP+EAYPLDKIILKGEW+FLEDLYFRLQETAEISANYP FVR+RIYKL
Sbjct: 241 ARNIPTYNASATTPQEAYPLDKIILKGEWNFLEDLYFRLQETAEISANYPYFVRHRIYKL 300

Query: 349 QDIQDEEEKKKLCCIFSYITHLIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSDSR 408
           QDIQDEEEKKKLCCIFSYITHLIKYKDQHS+GDVSSAKGHKIPSMLRQKFSSMFPTS+SR
Sbjct: 301 QDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTSESR 360

Query: 409 RISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLS 468
           RISTEK NLLISHVLVLTLFVD+FSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLS
Sbjct: 361 RISTEKINLLISHVLVLTLFVDEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLS 420

Query: 469 LVTLPIPLQFPDLRQKRRR 488
           LVTLPIPLQFPDLRQKRRR
Sbjct: 421 LVTLPIPLQFPDLRQKRRR 435

[Close]

BLAST of CmUC09G160740 vs. NCBI nr
Match: KAA0059416.1 (DNA-directed RNA polymerase I subunit rpa49 [Cucumis melo var. makuwa] >TYK03910.1 DNA-directed RNA polymerase I subunit rpa49 [Cucumis melo var. makuwa])

HSP 1 Score: 769.2 bits (1985), Expect = 2.1e-218
Identity = 393/439 (89.52%), Postives = 415/439 (94.53%), Query Frame = 0


Query: 49  MTEDTKSLELEENHNAEPDANSLSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKSPPLV 108
           M EDTKSLELEENHNAEPDANS SPAKKKKKSEKKKKRV S+NAKIQVLSN PQK PP+V
Sbjct: 1   MAEDTKSLELEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVV 60

Query: 109 GYFPSGFDPHKVADEEAAEEQNSVRARVYKHKNKPNRMQLVVSPTGSNVDFVGTNYLGEA 168
           GYFPSGFDPHK AD+   E+ +SVRARVYKH+NKPNRMQLVVSPTGSNVDFVGTNYLGEA
Sbjct: 61  GYFPSGFDPHKDADK---EQSHSVRARVYKHRNKPNRMQLVVSPTGSNVDFVGTNYLGEA 120

Query: 169 TAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQE 228
           TAGKQHCTYALGVLDKATQSLKIVPIASNMI RLDPKVRGSDVSENESPSVANEELS+QE
Sbjct: 121 TAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQE 180

Query: 229 KADRMKELTNLYGTKRSKMQALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHAEI 288
           KA+RM+ELT LYGTK+SK QA KLHALKQEDDP+TK DLD RMKNVVVNKEALEGT AEI
Sbjct: 181 KANRMRELTALYGTKKSKKQAQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEI 240

Query: 289 ARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL 348
           ARNIP YNASATTP+E YPLDKIILKGEWSFLEDLYFRL+ETAEI+A YPSFVRNRIYKL
Sbjct: 241 ARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKL 300

Query: 349 QDIQDEEEKKKLCCIFSYITHLIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSDSR 408
           QDIQDEEEKKKLCCIFSYITHLIKYKDQHS+GDVSSAKGHKIPSMLRQKFSSMFPT++SR
Sbjct: 301 QDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESR 360

Query: 409 RISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLS 468
           R+S +K NLLISHVLVLTLF D+FSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLS
Sbjct: 361 RLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLS 420

Query: 469 LVTLPIPLQFPDLRQKRRR 488
           L TLP+PLQFP+LRQKRRR
Sbjct: 421 LATLPVPLQFPELRQKRRR 436

[Close]

BLAST of CmUC09G160740 vs. NCBI nr
Match: XP_008462335.1 (PREDICTED: DNA-directed RNA polymerase I subunit rpa49 [Cucumis melo])

HSP 1 Score: 767.7 bits (1981), Expect = 6.1e-218
Identity = 392/439 (89.29%), Postives = 414/439 (94.31%), Query Frame = 0


Query: 49  MTEDTKSLELEENHNAEPDANSLSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKSPPLV 108
           M EDTKSLE EENHNAEPDANS SPAKKKKKSEKKKKRV S+NAKIQVLSN PQK PP+V
Sbjct: 1   MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVV 60

Query: 109 GYFPSGFDPHKVADEEAAEEQNSVRARVYKHKNKPNRMQLVVSPTGSNVDFVGTNYLGEA 168
           GYFPSGFDPHK AD+   E+ +SVRARVYKH+NKPNRMQLVVSPTGSNVDFVGTNYLGEA
Sbjct: 61  GYFPSGFDPHKDADK---EQSHSVRARVYKHRNKPNRMQLVVSPTGSNVDFVGTNYLGEA 120

Query: 169 TAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQE 228
           TAGKQHCTYALGVLDKATQSLKIVPIASNMI RLDPKVRGSDVSENESPSVANEELS+QE
Sbjct: 121 TAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQE 180

Query: 229 KADRMKELTNLYGTKRSKMQALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHAEI 288
           KA+RM+ELT LYGTK+SK QA KLHALKQEDDP+TK DLD RMKNVVVNKEALEGT AEI
Sbjct: 181 KANRMRELTALYGTKKSKKQAQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEI 240

Query: 289 ARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL 348
           ARNIP YNASATTP+E YPLDKIILKGEWSFLEDLYFRL+ETAEI+A YPSFVRNRIYKL
Sbjct: 241 ARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKL 300

Query: 349 QDIQDEEEKKKLCCIFSYITHLIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSDSR 408
           QDIQDEEEKKKLCCIFSYITHLIKYKDQHS+GDVSSAKGHKIPSMLRQKFSSMFPT++SR
Sbjct: 301 QDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESR 360

Query: 409 RISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLS 468
           R+S +K NLLISHVLVLTLF D+FSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLS
Sbjct: 361 RLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLS 420

Query: 469 LVTLPIPLQFPDLRQKRRR 488
           L TLP+PLQFP+LRQKRRR
Sbjct: 421 LATLPVPLQFPELRQKRRR 436

[Close]

BLAST of CmUC09G160740 vs. NCBI nr
Match: XP_004141689.1 (DNA-directed RNA polymerase I subunit rpa49 [Cucumis sativus] >KGN45511.1 hypothetical protein Csa_016354 [Cucumis sativus])

HSP 1 Score: 751.5 bits (1939), Expect = 4.5e-213
Identity = 387/441 (87.76%), Postives = 413/441 (93.65%), Query Frame = 0


Query: 47  ESMTEDTKSLELEENHNAEPDANSLSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKSPP 106
           ESM +DTKS+ELEENH     A+S SPAKKKKKSEKKKKRV S++AKIQVLSN PQK+PP
Sbjct: 2   ESMADDTKSVELEENHY----ASSQSPAKKKKKSEKKKKRVLSMDAKIQVLSNQPQKTPP 61

Query: 107 LVGYFPSGFDPHKVADEEAAEEQNSVRARVYKHKNKPNRMQLVVSPTGSNVDFVGTNYLG 166
           +VGYFPSGFDPHK AD+   E+  SVRARVYKHKN+PNRMQLVVSPTGSNVDFVGTNYLG
Sbjct: 62  VVGYFPSGFDPHKDADK---EQSRSVRARVYKHKNRPNRMQLVVSPTGSNVDFVGTNYLG 121

Query: 167 EATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSV 226
           EATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDV+ENESPSVANEELS 
Sbjct: 122 EATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSG 181

Query: 227 QEKADRMKELTNLYGTKRSKMQALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHA 286
           Q+KA+RM+ELT LYGTK+SK QA KLHALKQEDDP+TK DLD RMKNVVVNKEALEGT A
Sbjct: 182 QDKANRMRELTALYGTKKSKKQAQKLHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQA 241

Query: 287 EIARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIY 346
           E+ARNIP YNASATTP+EAYPLDKIILKGEWSFLEDLYFRLQETAEISA YPSFVRNRIY
Sbjct: 242 EVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIY 301

Query: 347 KLQDIQDEEEKKKLCCIFSYITHLIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSD 406
           KLQDIQDEEEKKKLCCIFSYITHLIKYKDQHS+GDVSSAKGHKIPSMLRQKFSSMFPT++
Sbjct: 302 KLQDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAE 361

Query: 407 SRRISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNN 466
           SRR+S +K NLLISHVLVL+LF D+FSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNN
Sbjct: 362 SRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNN 421

Query: 467 LSLVTLPIPLQFPDLRQKRRR 488
           LSL TLPIPLQFP+LRQKRRR
Sbjct: 422 LSLATLPIPLQFPELRQKRRR 435

[Close]

BLAST of CmUC09G160740 vs. NCBI nr
Match: XP_022992259.1 (DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita maxima])

HSP 1 Score: 747.3 bits (1928), Expect = 8.5e-212
Identity = 379/439 (86.33%), Postives = 408/439 (92.94%), Query Frame = 0


Query: 49  MTEDTKSLELEENHNAEPDANSLSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKSPPLV 108
           M EDTKS ELE+NH +EPDANS SPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQK+PPLV
Sbjct: 1   MAEDTKSFELEDNHYSEPDANSQSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKTPPLV 60

Query: 109 GYFPSGFDPHKVADEEAAEEQNSVRARVYKHKNKPNRMQLVVSPTGSNVDFVGTNYLGEA 168
            YFPSGFDPHK A+EEA EEQ+SVRARVY+HKNKPNRMQLVVSPTGSNVDFVGTNYLGEA
Sbjct: 61  CYFPSGFDPHKDANEEAVEEQDSVRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGEA 120

Query: 169 TAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQE 228
           TAGKQHC+Y LGVLDKATQSLKIVPIASNMIFRLDP++RGSDVSE ES SV NEELSVQE
Sbjct: 121 TAGKQHCSYGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEMESQSVENEELSVQE 180

Query: 229 KADRMKELTNLYGTKRSKMQALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHAEI 288
           KA++M+ELTNLYGTK+S  QA KLH+LKQEDDPDTKKDLD +MKNVVVNKEALE T A+I
Sbjct: 181 KAEKMRELTNLYGTKKSINQAKKLHSLKQEDDPDTKKDLDGKMKNVVVNKEALESTGAQI 240

Query: 289 ARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL 348
           ARNIP YN SATTP EAYPLDKIILKGEWSFLED+Y  LQE AEISA YPSFVRNRIYKL
Sbjct: 241 ARNIPTYNVSATTPREAYPLDKIILKGEWSFLEDIYSLLQEEAEISAKYPSFVRNRIYKL 300

Query: 349 QDIQDEEEKKKLCCIFSYITHLIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSDSR 408
           QD+QDEEEKK+LC IFSYITHLIKYKDQHS+GDV+SAK HK PSM+RQKFSSMFPTS++R
Sbjct: 301 QDVQDEEEKKQLCSIFSYITHLIKYKDQHSMGDVASAKSHKFPSMIRQKFSSMFPTSEAR 360

Query: 409 RISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLS 468
           R+STE  NLLISHVLVLTLF D+FSSDP+DIAKDLRTSPYDLRLHFDNLGCKFIRKNNLS
Sbjct: 361 RLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRTSPYDLRLHFDNLGCKFIRKNNLS 420

Query: 469 LVTLPIPLQFPDLRQKRRR 488
           LVTLP PL+FP+LRQKRRR
Sbjct: 421 LVTLPTPLEFPELRQKRRR 439

[Close]

BLAST of CmUC09G160740 vs. ExPASy Swiss-Prot
Match: Q54FE8 (DNA-directed RNA polymerase I subunit rpa49 OS=Dictyostelium discoideum OX=44689 GN=polr1e PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.9e-13
Identity = 74/319 (23.20%), Postives = 152/319 (47.65%), Query Frame = 0


Query: 173 QHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADR 232
           ++  YA+G+ DK T+ LKIVP     I  ++  V G  ++ + S  ++ E     E+ D+
Sbjct: 70  KYAKYAIGIFDKNTKQLKIVP---TKIQTMNQSVIGYTLTLDSSSVISRE-----ERYDK 129

Query: 233 MKELTNLYGTK--RSKMQALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHAEIAR 292
           +K+L + +G+K  + KMQ +++  ++  D   T K +D  +KN + + E+ E        
Sbjct: 130 IKKLADSFGSKITKKKMQKMEMENVENLDYEKTTKSIDA-VKNELADIESNEKPF----- 189

Query: 293 NIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFR--LQETAEISANYPSFVRNRIYKL 352
           ++P ++A      + Y ++ I+    +  L    F   + +T+E  +  P + ++++ + 
Sbjct: 190 DLPDFDAETNDVRKIYNIEAILPPRIFFGLNHQPFLDIISKTSEAPSYLPEYFKDQLKRF 249

Query: 353 QDIQDEEEKKKLCCIFSYITH---LIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTS 412
           +DI+DEE+    C + +++ +   L+K K  H    +      ++ + L   F S     
Sbjct: 250 EDIKDEEKVVYNCKLLTFMWYSMILMKSKGGHE-PLIKEGCTSEVINFLVSIFGSKI-NH 309

Query: 413 DSRRISTEKSNLLISHVLVLTLFVDKFS-SDPADIAKDLRTSPYDLRLHFDNLGCKFIR- 472
               IS +    + +++ +  L ++ F  +D   +A+ L  +      HF  +GCK +R 
Sbjct: 310 KKYNISQDDKLKIYNYLAIFALKLEDFQITDIKSLAQSLSLTSSSFEKHFTRVGCKVVRI 369

Query: 473 KNNLSLVTLPIPLQFPDLR 483
            +    V L  PL+ P  R
Sbjct: 370 GSEKRSVRLEAPLKLPKAR 372

[Close]

BLAST of CmUC09G160740 vs. ExPASy Swiss-Prot
Match: O14086 (DNA-directed RNA polymerase I subunit rpa49 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpa49 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 7.4e-09
Identity = 113/448 (25.22%), Postives = 183/448 (40.85%), Query Frame = 0


Query: 77  KKKSEKKKKRVPSVNAKIQVLSNHPQKSPPLVGYFPSGFDPHKVADEEAAEEQNSVRARV 136
           K K  K +         +++L       PPLV    SGF P             + R ++
Sbjct: 7   KGKKRKYRDSHSGDEKSVKILPLSESSLPPLVTTI-SGFYP-----------PENTRFQL 66

Query: 137 YKHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAS 196
            K  N+ NR   ++  T   V F   N   ++TA  +   Y L V DK  +  KIVP   
Sbjct: 67  LKKSNQSNRDASLIGRT-ERVQFEAKN---QSTATVE-ANYCLAVADKTGRVKKIVPAKY 126

Query: 197 NMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRMKELTNL---YGTKRSKMQALKLH 256
              F      R     + +   +  +  +V      M++  NL   +GT++S+   ++  
Sbjct: 127 LNTFE-----RNILALQEKDKFLKKKHGTVSGTV--MEQRANLGLAFGTRKSQKAIMEES 186

Query: 257 A--LKQEDDPDTKKDLDVRMKNVVVNKEALEGTHAEIA------RNIPMYNASATTPEEA 316
           A  +K E   D K  L   + NV    EAL  T  +IA      R IP  N  A + E+A
Sbjct: 187 ANRVKAETLGDVKDQL---VSNVQKATEALP-TQEDIAAAQAQDRPIPPVNVGAESIEDA 246

Query: 317 YPLDKIILKGEWS--FLEDLYFRLQE---TAEISANYPSFVRNRIYKLQDIQDEEEKKKL 376
           Y L+ II K E+S  +++ L     E      +   +  F+  R  +L  I++ ++K+  
Sbjct: 247 YKLEDIIPKEEFSAIYIKPLLENPDERNWAKLLPYRHSLFINERFQRLLSIEEVDQKR-- 306

Query: 377 CCIFSYITHLIKYK-DQHSVGDVSSAKGHKI--PSMLRQKFSSMFPTS---DSRRISTEK 436
             I  YI+ L  +   + SVG+  + +      P +L       F  +    S ++S+ +
Sbjct: 307 ARILYYISLLQAFLFSRRSVGNRETLRKKLADPPEILIDGLIKRFTQTTGIGSVQVSSRE 366

Query: 437 SNLLISHVLVLTLFVDKFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIR----------- 488
            + +I ++LVL L VD +S+D   +A DL          F  +GC+ +            
Sbjct: 367 VDKIICYILVLCLIVDNYSTDVLTLANDLNVKTMKANELFRTVGCRIMAYTETQRMALGL 424

[Close]

BLAST of CmUC09G160740 vs. ExPASy TrEMBL
Match: A0A5D3BXN3 (DNA-directed RNA polymerase I subunit rpa49 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001060 PE=3 SV=1)

HSP 1 Score: 769.2 bits (1985), Expect = 1.0e-218
Identity = 393/439 (89.52%), Postives = 415/439 (94.53%), Query Frame = 0


Query: 49  MTEDTKSLELEENHNAEPDANSLSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKSPPLV 108
           M EDTKSLELEENHNAEPDANS SPAKKKKKSEKKKKRV S+NAKIQVLSN PQK PP+V
Sbjct: 1   MAEDTKSLELEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVV 60

Query: 109 GYFPSGFDPHKVADEEAAEEQNSVRARVYKHKNKPNRMQLVVSPTGSNVDFVGTNYLGEA 168
           GYFPSGFDPHK AD+   E+ +SVRARVYKH+NKPNRMQLVVSPTGSNVDFVGTNYLGEA
Sbjct: 61  GYFPSGFDPHKDADK---EQSHSVRARVYKHRNKPNRMQLVVSPTGSNVDFVGTNYLGEA 120

Query: 169 TAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQE 228
           TAGKQHCTYALGVLDKATQSLKIVPIASNMI RLDPKVRGSDVSENESPSVANEELS+QE
Sbjct: 121 TAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQE 180

Query: 229 KADRMKELTNLYGTKRSKMQALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHAEI 288
           KA+RM+ELT LYGTK+SK QA KLHALKQEDDP+TK DLD RMKNVVVNKEALEGT AEI
Sbjct: 181 KANRMRELTALYGTKKSKKQAQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEI 240

Query: 289 ARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL 348
           ARNIP YNASATTP+E YPLDKIILKGEWSFLEDLYFRL+ETAEI+A YPSFVRNRIYKL
Sbjct: 241 ARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKL 300

Query: 349 QDIQDEEEKKKLCCIFSYITHLIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSDSR 408
           QDIQDEEEKKKLCCIFSYITHLIKYKDQHS+GDVSSAKGHKIPSMLRQKFSSMFPT++SR
Sbjct: 301 QDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESR 360

Query: 409 RISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLS 468
           R+S +K NLLISHVLVLTLF D+FSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLS
Sbjct: 361 RLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLS 420

Query: 469 LVTLPIPLQFPDLRQKRRR 488
           L TLP+PLQFP+LRQKRRR
Sbjct: 421 LATLPVPLQFPELRQKRRR 436

[Close]

BLAST of CmUC09G160740 vs. ExPASy TrEMBL
Match: A0A1S3CH93 (DNA-directed RNA polymerase I subunit rpa49 OS=Cucumis melo OX=3656 GN=LOC103500711 PE=3 SV=1)

HSP 1 Score: 767.7 bits (1981), Expect = 2.9e-218
Identity = 392/439 (89.29%), Postives = 414/439 (94.31%), Query Frame = 0


Query: 49  MTEDTKSLELEENHNAEPDANSLSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKSPPLV 108
           M EDTKSLE EENHNAEPDANS SPAKKKKKSEKKKKRV S+NAKIQVLSN PQK PP+V
Sbjct: 1   MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVV 60

Query: 109 GYFPSGFDPHKVADEEAAEEQNSVRARVYKHKNKPNRMQLVVSPTGSNVDFVGTNYLGEA 168
           GYFPSGFDPHK AD+   E+ +SVRARVYKH+NKPNRMQLVVSPTGSNVDFVGTNYLGEA
Sbjct: 61  GYFPSGFDPHKDADK---EQSHSVRARVYKHRNKPNRMQLVVSPTGSNVDFVGTNYLGEA 120

Query: 169 TAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQE 228
           TAGKQHCTYALGVLDKATQSLKIVPIASNMI RLDPKVRGSDVSENESPSVANEELS+QE
Sbjct: 121 TAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQE 180

Query: 229 KADRMKELTNLYGTKRSKMQALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHAEI 288
           KA+RM+ELT LYGTK+SK QA KLHALKQEDDP+TK DLD RMKNVVVNKEALEGT AEI
Sbjct: 181 KANRMRELTALYGTKKSKKQAQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEI 240

Query: 289 ARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL 348
           ARNIP YNASATTP+E YPLDKIILKGEWSFLEDLYFRL+ETAEI+A YPSFVRNRIYKL
Sbjct: 241 ARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKL 300

Query: 349 QDIQDEEEKKKLCCIFSYITHLIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSDSR 408
           QDIQDEEEKKKLCCIFSYITHLIKYKDQHS+GDVSSAKGHKIPSMLRQKFSSMFPT++SR
Sbjct: 301 QDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESR 360

Query: 409 RISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLS 468
           R+S +K NLLISHVLVLTLF D+FSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLS
Sbjct: 361 RLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLS 420

Query: 469 LVTLPIPLQFPDLRQKRRR 488
           L TLP+PLQFP+LRQKRRR
Sbjct: 421 LATLPVPLQFPELRQKRRR 436

[Close]

BLAST of CmUC09G160740 vs. ExPASy TrEMBL
Match: A0A0A0KCN4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G450680 PE=3 SV=1)

HSP 1 Score: 751.5 bits (1939), Expect = 2.2e-213
Identity = 387/441 (87.76%), Postives = 413/441 (93.65%), Query Frame = 0


Query: 47  ESMTEDTKSLELEENHNAEPDANSLSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKSPP 106
           ESM +DTKS+ELEENH     A+S SPAKKKKKSEKKKKRV S++AKIQVLSN PQK+PP
Sbjct: 2   ESMADDTKSVELEENHY----ASSQSPAKKKKKSEKKKKRVLSMDAKIQVLSNQPQKTPP 61

Query: 107 LVGYFPSGFDPHKVADEEAAEEQNSVRARVYKHKNKPNRMQLVVSPTGSNVDFVGTNYLG 166
           +VGYFPSGFDPHK AD+   E+  SVRARVYKHKN+PNRMQLVVSPTGSNVDFVGTNYLG
Sbjct: 62  VVGYFPSGFDPHKDADK---EQSRSVRARVYKHKNRPNRMQLVVSPTGSNVDFVGTNYLG 121

Query: 167 EATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSV 226
           EATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDV+ENESPSVANEELS 
Sbjct: 122 EATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSG 181

Query: 227 QEKADRMKELTNLYGTKRSKMQALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHA 286
           Q+KA+RM+ELT LYGTK+SK QA KLHALKQEDDP+TK DLD RMKNVVVNKEALEGT A
Sbjct: 182 QDKANRMRELTALYGTKKSKKQAQKLHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQA 241

Query: 287 EIARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIY 346
           E+ARNIP YNASATTP+EAYPLDKIILKGEWSFLEDLYFRLQETAEISA YPSFVRNRIY
Sbjct: 242 EVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIY 301

Query: 347 KLQDIQDEEEKKKLCCIFSYITHLIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSD 406
           KLQDIQDEEEKKKLCCIFSYITHLIKYKDQHS+GDVSSAKGHKIPSMLRQKFSSMFPT++
Sbjct: 302 KLQDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAE 361

Query: 407 SRRISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNN 466
           SRR+S +K NLLISHVLVL+LF D+FSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNN
Sbjct: 362 SRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNN 421

Query: 467 LSLVTLPIPLQFPDLRQKRRR 488
           LSL TLPIPLQFP+LRQKRRR
Sbjct: 422 LSLATLPIPLQFPELRQKRRR 435

[Close]

BLAST of CmUC09G160740 vs. ExPASy TrEMBL
Match: A0A6J1JX25 (DNA-directed RNA polymerase I subunit rpa49-like OS=Cucurbita maxima OX=3661 GN=LOC111488633 PE=3 SV=1)

HSP 1 Score: 747.3 bits (1928), Expect = 4.1e-212
Identity = 379/439 (86.33%), Postives = 408/439 (92.94%), Query Frame = 0


Query: 49  MTEDTKSLELEENHNAEPDANSLSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKSPPLV 108
           M EDTKS ELE+NH +EPDANS SPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQK+PPLV
Sbjct: 1   MAEDTKSFELEDNHYSEPDANSQSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKTPPLV 60

Query: 109 GYFPSGFDPHKVADEEAAEEQNSVRARVYKHKNKPNRMQLVVSPTGSNVDFVGTNYLGEA 168
            YFPSGFDPHK A+EEA EEQ+SVRARVY+HKNKPNRMQLVVSPTGSNVDFVGTNYLGEA
Sbjct: 61  CYFPSGFDPHKDANEEAVEEQDSVRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGEA 120

Query: 169 TAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQE 228
           TAGKQHC+Y LGVLDKATQSLKIVPIASNMIFRLDP++RGSDVSE ES SV NEELSVQE
Sbjct: 121 TAGKQHCSYGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEMESQSVENEELSVQE 180

Query: 229 KADRMKELTNLYGTKRSKMQALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHAEI 288
           KA++M+ELTNLYGTK+S  QA KLH+LKQEDDPDTKKDLD +MKNVVVNKEALE T A+I
Sbjct: 181 KAEKMRELTNLYGTKKSINQAKKLHSLKQEDDPDTKKDLDGKMKNVVVNKEALESTGAQI 240

Query: 289 ARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL 348
           ARNIP YN SATTP EAYPLDKIILKGEWSFLED+Y  LQE AEISA YPSFVRNRIYKL
Sbjct: 241 ARNIPTYNVSATTPREAYPLDKIILKGEWSFLEDIYSLLQEEAEISAKYPSFVRNRIYKL 300

Query: 349 QDIQDEEEKKKLCCIFSYITHLIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSDSR 408
           QD+QDEEEKK+LC IFSYITHLIKYKDQHS+GDV+SAK HK PSM+RQKFSSMFPTS++R
Sbjct: 301 QDVQDEEEKKQLCSIFSYITHLIKYKDQHSMGDVASAKSHKFPSMIRQKFSSMFPTSEAR 360

Query: 409 RISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLS 468
           R+STE  NLLISHVLVLTLF D+FSSDP+DIAKDLRTSPYDLRLHFDNLGCKFIRKNNLS
Sbjct: 361 RLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRTSPYDLRLHFDNLGCKFIRKNNLS 420

Query: 469 LVTLPIPLQFPDLRQKRRR 488
           LVTLP PL+FP+LRQKRRR
Sbjct: 421 LVTLPTPLEFPELRQKRRR 439

[Close]

BLAST of CmUC09G160740 vs. ExPASy TrEMBL
Match: A0A6J1GQS4 (DNA-directed RNA polymerase I subunit rpa49-like OS=Cucurbita moschata OX=3662 GN=LOC111456250 PE=3 SV=1)

HSP 1 Score: 741.9 bits (1914), Expect = 1.7e-210
Identity = 376/439 (85.65%), Postives = 406/439 (92.48%), Query Frame = 0


Query: 49  MTEDTKSLELEENHNAEPDANSLSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKSPPLV 108
           M EDTKS ELE+NH +EPD+N  SPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQK+PPLV
Sbjct: 1   MAEDTKSFELEDNHYSEPDSNLQSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKTPPLV 60

Query: 109 GYFPSGFDPHKVADEEAAEEQNSVRARVYKHKNKPNRMQLVVSPTGSNVDFVGTNYLGEA 168
            YFPSGFDPHK  +EEA EEQ+SVRARVY+HKNKPNRMQLVVSPTGSNVDFVGTNYLGEA
Sbjct: 61  CYFPSGFDPHKDVNEEAVEEQDSVRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGEA 120

Query: 169 TAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQE 228
           TAGKQHC+Y LGVLDKATQSLKIVPIASNMIFRLDP++RGSDVSE ESPSV NEELSVQE
Sbjct: 121 TAGKQHCSYGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEMESPSVENEELSVQE 180

Query: 229 KADRMKELTNLYGTKRSKMQALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHAEI 288
           KA++M+ELTNLYGTK+S  QA KL +LKQEDDPDTKKDLD +MKNVVVNKEALE T A+I
Sbjct: 181 KAEKMRELTNLYGTKKSINQAKKLRSLKQEDDPDTKKDLDGKMKNVVVNKEALESTGAQI 240

Query: 289 ARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL 348
           ARNIP YN SATTP EAYPLDKIILKGEWS+LEDLY  LQE AEISA YPSFVRNRIYKL
Sbjct: 241 ARNIPTYNVSATTPREAYPLDKIILKGEWSYLEDLYSLLQEEAEISAKYPSFVRNRIYKL 300

Query: 349 QDIQDEEEKKKLCCIFSYITHLIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTSDSR 408
           QD+QDEEEKK+LC IFSYITHLIKYKDQHS+GDV+SAK HK PSM+RQKFSSMFPTS++R
Sbjct: 301 QDVQDEEEKKQLCSIFSYITHLIKYKDQHSMGDVASAKSHKFPSMIRQKFSSMFPTSEAR 360

Query: 409 RISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLS 468
           R+STE  NLLISHVLVLTLF D+FSSDP+DIAKDLRTSPYDLRLHFDNLGCKFIRKNNLS
Sbjct: 361 RLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRTSPYDLRLHFDNLGCKFIRKNNLS 420

Query: 469 LVTLPIPLQFPDLRQKRRR 488
           LVTLP PL+FP+LRQKRRR
Sbjct: 421 LVTLPTPLEFPELRQKRRR 439

[Close]

BLAST of CmUC09G160740 vs. TAIR 10
Match: AT3G13940.1 (DNA binding;DNA-directed RNA polymerases )

HSP 1 Score: 349.7 bits (896), Expect = 3.7e-96
Identity = 195/441 (44.22%), Postives = 283/441 (64.17%), Query Frame = 0


Query: 57  ELEENHNAEPDANSLSPAKKKKKSEKK--------KKRVPSVNAKIQVLSNHPQKSPPLV 116
           E  +  N E D N+    +KK++  KK         +    V  K+  ++  P +  P+V
Sbjct: 5   EKNDYRNEEEDFNTPQQLQKKQRKGKKIATETEDENEEDKRVTLKVTQVAERPDRISPIV 64

Query: 117 GYFPSGFDPHKVADEEAAEEQNSVRARVYKHK-NKPNRMQLVVSPTGSNVDFVGTNYLGE 176
            YF +G+DP KV  +       + +  VYKHK +   R+Q+VVSP G+ V+FVGTNY GE
Sbjct: 65  AYFSTGYDPCKVDPKTGKRVHETPKVTVYKHKDDSKKRIQVVVSPPGARVEFVGTNYTGE 124

Query: 177 ATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENE-SPSVANEELSV 236
             A  Q  TY +GV ++  ++L+I+P+A N I RL+P+V+  + +E E S S   +EL  
Sbjct: 125 -QAAMQTNTYRVGVFNREAKTLRILPVAHNKIIRLEPRVKAQETNEEEASGSAVVKELEE 184

Query: 237 QEKADRMKELTNLYGTKRSKMQALKLHALKQEDDPDTKKDLDVRMKNVVVNKEALEGTHA 296
            +  +R     + Y TK++  +  K  AL   DD  T+K LD ++  + VN  ALEGT +
Sbjct: 185 LKTGER-----DRYNTKKAVTRDKKKRALYMGDDAATQKVLDGKLSELGVNTAALEGTSS 244

Query: 297 EIARNIPMYNASATTPEEAYPLDKIILKGEWSFLEDLYFRLQETAEISAN-YPSFVRNRI 356
            +ARNIP YN +ATT  EAYPL+KII KG+WSFLED+Y+ LQ+  E +   YP FVRNR+
Sbjct: 245 TVARNIPPYNTAATTANEAYPLEKIIEKGDWSFLEDIYWLLQQETEAATEAYPVFVRNRL 304

Query: 357 YKLQDIQDEEEKKKLCCIFSYITHLIKYKDQHSVGDVSSAKGHKIPSMLRQKFSSMFPTS 416
           Y+L+DI+D+ +K+ +C   + +THL+K+KD++S+    SAK HK+P + RQKF+SMF  S
Sbjct: 305 YRLRDIKDDMKKQTVCGAATLLTHLVKFKDRNSMNGYDSAKDHKMPDIFRQKFNSMFKDS 364

Query: 417 DSRRISTEKSNLLISHVLVLTLFVDKFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKN 476
           +S RI  +K NLLIS+VLVL+L VD F +DP DIAKDLR S  +LR HF  LGCKF+++N
Sbjct: 365 ESDRIPVDKINLLISYVLVLSLHVDNFMTDPEDIAKDLRISTVELRKHFLQLGCKFLKQN 424

Query: 477 NLSLVTLPIPLQFPDLRQKRR 487
           + ++ TLP PL FP++ ++RR
Sbjct: 425 STTVATLPTPLNFPEVNRRRR 439

The following BLAST results are available for this feature:

BLAST of CmUC09G160740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896156.1	7.9e-226	93.39	DNA-directed RNA polymerase I subunit rpa49 [Benincasa hispida]	[more]
KAA0059416.1	2.1e-218	89.52	DNA-directed RNA polymerase I subunit rpa49 [Cucumis melo var. makuwa] >TYK03910...	[more]
XP_008462335.1	6.1e-218	89.29	PREDICTED: DNA-directed RNA polymerase I subunit rpa49 [Cucumis melo]	[more]
XP_004141689.1	4.5e-213	87.76	DNA-directed RNA polymerase I subunit rpa49 [Cucumis sativus] >KGN45511.1 hypoth...	[more]
XP_022992259.1	8.5e-212	86.33	DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita maxima]	[more]

BLAST of CmUC09G160740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54FE8	4.9e-13	23.20	DNA-directed RNA polymerase I subunit rpa49 OS=Dictyostelium discoideum OX=44689...	[more]
O14086	7.4e-09	25.22	DNA-directed RNA polymerase I subunit rpa49 OS=Schizosaccharomyces pombe (strain...	[more]

BLAST of CmUC09G160740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BXN3	1.0e-218	89.52	DNA-directed RNA polymerase I subunit rpa49 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3CH93	2.9e-218	89.29	DNA-directed RNA polymerase I subunit rpa49 OS=Cucumis melo OX=3656 GN=LOC103500...	[more]
A0A0A0KCN4	2.2e-213	87.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G450680 PE=3 SV=1	[more]
A0A6J1JX25	4.1e-212	86.33	DNA-directed RNA polymerase I subunit rpa49-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1GQS4	1.7e-210	85.65	DNA-directed RNA polymerase I subunit rpa49-like OS=Cucurbita moschata OX=3662 G...	[more]

BLAST of CmUC09G160740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13940.1	3.7e-96	44.22	DNA binding;DNA-directed RNA polymerases	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 219..239
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..64
IPR009668	RNA polymerase I associated factor, A49-like	PFAM	PF06870	RNA_pol_I_A49	coord: 131..486 e-value: 2.5E-57 score: 194.5
IPR009668	RNA polymerase I associated factor, A49-like	PANTHER	PTHR14440	DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA49	coord: 76..486

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC09G160740.1	CmUC09G160740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042790	nucleolar large rRNA transcription by RNA polymerase I
biological_process	GO:0001188	RNA polymerase I preinitiation complex assembly
biological_process	GO:0006362	transcription elongation from RNA polymerase I promoter
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005736	RNA polymerase I complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity