CmUC08G158200 (gene) Watermelon (USVL531) v1

Overview
NameCmUC08G158200
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionSnakin-1
LocationCmU531Chr08: 26996379 .. 26999075 (-)
RNA-Seq ExpressionCmUC08G158200
SyntenyCmUC08G158200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTTCCCCTTAGAAGTGGAAAGTGAAGGCGACGGTGCAATGAGAGGAAGCCACGTAGACATCCGCAATAACAAAAACCCCAACGATAAAAAGGTGACGAAGCATGATTGGTGAGTCTCCATAGCAATGAAAACTCTAGAGAATCCACAAGTTTACAACACAACCAAAAATGGTAGAAGGAATCTTACTACTAACTACTGTGGGAAAAAAAAAAAAAAAAAAAAAATTTACTTTGATGACAGTCTGGAATGTGCTGGTGGATTTCACTTTCATTTAATAATTCCACCCTCCTGAAAGTTCCTCTTTAAATACCCCTTCAAAACCACCTCAAAATCTCACAAATTTCTCTTCATATGCCTTTGTTGGTTCCCAAGAAAATGAAGTTCCTTCATCTTCTTACTTGCCTTCTCGTTCTCACTTCCTTCCTGGAGCTGTCCTTAGGTGCCTCAGGTAAGAAACTAATTAACGTTGGAGATTAAATAATATCATATATCATACCATTGTGACGGGTGTTTTTGTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAAGGCTTTTGTGGGTCGAAATGTAGAAGGAGGTGTGCAAAAGCTGGGGTGCAGGATCGGTGCATGAAGTATTGTGGGATATGTTGCGAGAAATGCGGGTGTGTGCCGTCTGGGACTTATGGGAATAAACATGAATGCCCTTGCTATGGGAATATGAAGAACTCCAAGGGCTATTCCAAGTGTCCTTAATTAACTAAGCCCCCTTTAATTTCTTTTGCCGTTTCCCTAAGCTTTTTGTGTTCTTTATGGACTGGCCTTCTGAGTTCAATATATATATATATATATATATTTTTTTTTTTGTTGAACTTTTAACATCTCTCATTTATTTTCTTCTCTCTAGTTTAAGAAAATAAAAAAGAAAAATAATGAAATCTGAGTGCTGGGTAGGAGGGTCCTTTTGTTGAAGATTGAGTTGTTTTGTTTAGGACGACCGTGTTCACGTGCGCTGTAGAATGTGACCACCACACTTTTACTCTTTCTTCTCTCTCCAATTAATTCCTCAAACTTTAATGCCACATCCATCGAAAATTTATACTCAAAATAATACTTGGCTTTCTTAAAAAGAAAAAAATATATTAATAATACTAATATACTACGTAATAATATGATTTTAAAAGAGAATAATATAATTGAGGTTTGGATTACATCTATTTTTGTGCAAGTTCATGTGTAGTTAGCCTATAAAAAATAAAAGTATGGGATTAAGTGTAACTTAATAGTTACTCTTTAATAATTTTCTAAAACAATGTACTAAATATTGATTGACTAATGTTGATTGGTTGCACAAAAATGGAATCGATTGAGATGTATTCAAATATTTGGTAAGATTCTTAAATATTATAAGTGTGGTAAGTAATGGTATGAACATTCTTTTTTCCTACTATGCTAGTTCTAAATTTTTTTTCCGTCATATCACACCTCACAGAGCACCTATCAAATAAGAAAAAACTTACTATTGTTAGTTAAACGAAACAAACAACTTTACTCTGAATTGAAGCTCTTGAATTGAATTCTAAATTTAAATAAGGTCCGTAGAGCATTCATATATTTTTGTTAATATTCCAATGTGCAATAATGATGATTAAAATAGGTATTTTTTAAAAAATTTATATATATATTGACTTTAATGTGTGTTTCTTTAAAATTCAATCAATTCTTCTTTTTTTTTTTTGGCTATGTAGTTGAATATATCTAATAATATTATATTTTAGTGATAACTGACATATTCTCTCTCAAAGAGAAATAGAAAATTGATCTTCAATTTTTATAATTGTTTATTAAGAAAATATTCTTTATCTAAAAAAAAAAAGGAAAAATAGATAGCACAATGAAAAATTGAAAAGAAAAAAAAAATCAAATTTGCTAGTTTTTTAGGGTAAATTACATGTTTAATCTCATTAATGAGAGCAATGATTACATCTAATCCTATGTTCTAATTCTTTAAAAGAAAAAAATTAGTTGCCACTTGACAATTTTTTTATTTTTATTTTTATTATTCTACATTAGTGGAGAGTTGAAAAATAATCTTTAGATTACTAATTTATTTGGACGATGCGTTCGATGCCCCATTTTGGTCCTAATTTTTTTTTTTTTTTCTTTTACCTTTCTTTAAACTTCAAATTCCTATCCCCACAGATTTTTGCTACAAAAAGAAAATAAGGGTAATTATAATTACACGATTCGTGGAAATTTAAGGTCAAATACAATATAATCGAAAATCCCATATCCAAAAGTTGAATAGGCCAATTGAGTAAGCTTGAAATCTGAAGTTGGGATTAAAGTTGATAGGTGAAAAATATTGATTAAACCTTGAAGAGATGTGTCCACTGGTAAGGCATCAAAGTGTGGGCAAAAGACGGAGCAAAACGGGACGTGGCCTACAGTTTGCCCACAATGGTTTGGCTCTGGGCATTGTGAGGCCACCGCCTTCACTCATATCCACCATCTCCTTCCCCACTCTCCGCCACTCAAAGCACTGAATCAAACACCCCAAAGTCAGCCCCACCATCCGCATCGCCAATCCCTCACCGGGACAGCCCCTCCGCCCCGCCCCAAACGGCAGCCAACGACACCCCTCCTCCACTTCCCCTGTAGCCTGGAACCGCTCCGGCCTAAACTCTGCTGGGTCCGGCCATGA

mRNA sequence

ATGGCGTTCCCCTTAGAAGTGGAAAGTGAAGGCGACGGTGCAATGAGAGGAAGCCACGTAGACATCCGCAATAACAAAAACCCCAACGATAAAAAGGTGACGAAGCATGATTGTTCCCAAGAAAATGAAGTTCCTTCATCTTCTTACTTGCCTTCTCGTTCTCACTTCCTTCCTGGAGCTGTCCTTAGGTGCCTCAGAAGGAGGTGTGCAAAAGCTGGGGTGCAGGATCGGTGCATGAAGTATTGTGGGATATGTTGCGAGAAATGCGGAGATGTGTCCACTGGTAAGGCATCAAAGTGTGGGCAAAAGACGGAGCAAAACGGGACGTGGCCTACAGTTTGCCCACAATGGTTTGGCTCTGGGCATTGTGAGGCCACCGCCTTCACTCATATCCACCATCTCCTTCCCCACTCTCCGCCACTCAAAGCACTGAATCAAACACCCCAAAGTCAGCCCCACCATCCGCATCGCCAATCCCTCACCGGGACAGCCCCTCCGCCCCGCCCCAAACGGCAGCCAACGACACCCCTCCTCCACTTCCCCTGTAGCCTGGAACCGCTCCGGCCTAAACTCTGCTGGGTCCGGCCATGA

Coding sequence (CDS)

ATGGCGTTCCCCTTAGAAGTGGAAAGTGAAGGCGACGGTGCAATGAGAGGAAGCCACGTAGACATCCGCAATAACAAAAACCCCAACGATAAAAAGGTGACGAAGCATGATTGTTCCCAAGAAAATGAAGTTCCTTCATCTTCTTACTTGCCTTCTCGTTCTCACTTCCTTCCTGGAGCTGTCCTTAGGTGCCTCAGAAGGAGGTGTGCAAAAGCTGGGGTGCAGGATCGGTGCATGAAGTATTGTGGGATATGTTGCGAGAAATGCGGAGATGTGTCCACTGGTAAGGCATCAAAGTGTGGGCAAAAGACGGAGCAAAACGGGACGTGGCCTACAGTTTGCCCACAATGGTTTGGCTCTGGGCATTGTGAGGCCACCGCCTTCACTCATATCCACCATCTCCTTCCCCACTCTCCGCCACTCAAAGCACTGAATCAAACACCCCAAAGTCAGCCCCACCATCCGCATCGCCAATCCCTCACCGGGACAGCCCCTCCGCCCCGCCCCAAACGGCAGCCAACGACACCCCTCCTCCACTTCCCCTGTAGCCTGGAACCGCTCCGGCCTAAACTCTGCTGGGTCCGGCCATGA

Protein sequence

MAFPLEVESEGDGAMRGSHVDIRNNKNPNDKKVTKHDCSQENEVPSSSYLPSRSHFLPGAVLRCLRRRCAKAGVQDRCMKYCGICCEKCGDVSTGKASKCGQKTEQNGTWPTVCPQWFGSGHCEATAFTHIHHLLPHSPPLKALNQTPQSQPHHPHRQSLTGTAPPPRPKRQPTTPLLHFPCSLEPLRPKLCWVRP
Homology
[Close]
BLAST of CmUC08G158200 vs. NCBI nr
Match: XP_004142881.1 (peamaclein [Cucumis sativus] >KGN62465.1 hypothetical protein Csa_018588 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-05
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = 0 

Query: 66 RRRCAKAGVQDRCMKYCGICCEKCGDVSTG 96
          RRRC+KAGV+DRCMKYCGICCEKCG V +G
Sbjct: 32 RRRCSKAGVRDRCMKYCGICCEKCGCVPSG 61

[Close]
BLAST of CmUC08G158200 vs. NCBI nr
Match: XP_038885998.1 (peamaclein-like [Benincasa hispida])

HSP 1 Score: 60.5 bits (145), Expect = 1.9e-05
Identity = 26/38 (68.42%), Postives = 29/38 (76.32%), Query Frame = 0 

Query: 58 PGAVLRCLRRRCAKAGVQDRCMKYCGICCEKCGDVSTG 96
          PG      ++RCAKAGVQDRCMKYCGICC KCG V +G
Sbjct: 31 PGLCRSKCKKRCAKAGVQDRCMKYCGICCAKCGCVPSG 68

[Close]
BLAST of CmUC08G158200 vs. NCBI nr
Match: XP_022961995.1 (peamaclein-like [Cucurbita moschata] >KAG7029319.1 Snakin-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 59.7 bits (143), Expect = 3.3e-05
Identity = 26/38 (68.42%), Postives = 28/38 (73.68%), Query Frame = 0 

Query: 58 PGAVLRCLRRRCAKAGVQDRCMKYCGICCEKCGDVSTG 96
          PG        RCAKAGVQDRC+KYCGICCEKCG V +G
Sbjct: 24 PGVCSSKCASRCAKAGVQDRCLKYCGICCEKCGCVPSG 61

[Close]
BLAST of CmUC08G158200 vs. NCBI nr
Match: KAG6598348.1 (putative LRR receptor-like serine/threonine-protein kinase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 59.7 bits (143), Expect = 3.3e-05
Identity = 26/38 (68.42%), Postives = 28/38 (73.68%), Query Frame = 0 

Query: 58 PGAVLRCLRRRCAKAGVQDRCMKYCGICCEKCGDVSTG 96
          PG        RCAKAGVQDRC+KYCGICCEKCG V +G
Sbjct: 24 PGVCSSKCASRCAKAGVQDRCLKYCGICCEKCGCVPSG 61

[Close]
BLAST of CmUC08G158200 vs. NCBI nr
Match: XP_023546651.1 (peamaclein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 58.9 bits (141), Expect = 5.6e-05
Identity = 26/38 (68.42%), Postives = 28/38 (73.68%), Query Frame = 0 

Query: 58 PGAVLRCLRRRCAKAGVQDRCMKYCGICCEKCGDVSTG 96
          PG        RCAKAGVQDRC+KYCGICCEKCG V +G
Sbjct: 24 PGFCSSKCASRCAKAGVQDRCLKYCGICCEKCGCVPSG 61

[Close]
BLAST of CmUC08G158200 vs. ExPASy Swiss-Prot
Match: C0HLQ2 (Cypmaclein OS=Cupressus sempervirens OX=13469 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.0e-05
Identity = 21/31 (67.74%), Postives = 23/31 (74.19%), Query Frame = 0 

Query: 67 RRCAKAGVQDRCMKYCGICCEKCGDVSTGKA 98
          RRC+KA   DRC+KYCGICCEKC  V  G A
Sbjct: 11 RRCSKASAHDRCLKYCGICCEKCHCVPPGTA 41

[Close]
BLAST of CmUC08G158200 vs. ExPASy Swiss-Prot
Match: P86888 (Peamaclein OS=Prunus persica OX=3760 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.0e-05
Identity = 20/28 (71.43%), Postives = 24/28 (85.71%), Query Frame = 0 

Query: 68 RCAKAGVQDRCMKYCGICCEKCGDVSTG 96
          RC+KAG Q+RC+KYCGICCEKC  V +G
Sbjct: 12 RCSKAGYQERCLKYCGICCEKCHCVPSG 39

[Close]
BLAST of CmUC08G158200 vs. ExPASy Swiss-Prot
Match: C0HLQ1 (Cypmaclein OS=Cryptomeria japonica OX=3369 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.6e-05
Identity = 20/29 (68.97%), Postives = 22/29 (75.86%), Query Frame = 0 

Query: 67 RRCAKAGVQDRCMKYCGICCEKCGDVSTG 96
          RRC+KA   DRC+KYCGICCEKC  V  G
Sbjct: 11 RRCSKASAHDRCLKYCGICCEKCNCVPPG 39

[Close]
BLAST of CmUC08G158200 vs. ExPASy Swiss-Prot
Match: C0HLQ0 (Cypmaclein OS=Juniperus ashei OX=13101 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 5.8e-05
Identity = 20/31 (64.52%), Postives = 23/31 (74.19%), Query Frame = 0 

Query: 67 RRCAKAGVQDRCMKYCGICCEKCGDVSTGKA 98
          RRC+KA   DRC+KYCGICC+KC  V  G A
Sbjct: 11 RRCSKASAHDRCLKYCGICCKKCHCVPPGTA 41

[Close]
BLAST of CmUC08G158200 vs. ExPASy Swiss-Prot
Match: Q948Z4 (Snakin-1 OS=Solanum tuberosum OX=4113 GN=SN1 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 5.8e-05
Identity = 19/28 (67.86%), Postives = 24/28 (85.71%), Query Frame = 0 

Query: 68 RCAKAGVQDRCMKYCGICCEKCGDVSTG 96
          RC+KAG+ DRC+KYCGICCE+C  V +G
Sbjct: 37 RCSKAGLADRCLKYCGICCEECKCVPSG 64

[Close]
BLAST of CmUC08G158200 vs. ExPASy TrEMBL
Match: A0A0A0LKN7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354910 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.1e-06
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = 0 

Query: 66 RRRCAKAGVQDRCMKYCGICCEKCGDVSTG 96
          RRRC+KAGV+DRCMKYCGICCEKCG V +G
Sbjct: 32 RRRCSKAGVRDRCMKYCGICCEKCGCVPSG 61

[Close]
BLAST of CmUC08G158200 vs. ExPASy TrEMBL
Match: A0A6J1HDT0 (peamaclein-like OS=Cucurbita moschata OX=3662 GN=LOC111462598 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.6e-05
Identity = 26/38 (68.42%), Postives = 28/38 (73.68%), Query Frame = 0 

Query: 58 PGAVLRCLRRRCAKAGVQDRCMKYCGICCEKCGDVSTG 96
          PG        RCAKAGVQDRC+KYCGICCEKCG V +G
Sbjct: 24 PGVCSSKCASRCAKAGVQDRCLKYCGICCEKCGCVPSG 61

[Close]
BLAST of CmUC08G158200 vs. ExPASy TrEMBL
Match: A0A1S3BAP8 (peamaclein-like OS=Cucumis melo OX=3656 GN=LOC103487854 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.6e-05
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 66 RRRCAKAGVQDRCMKYCGICCEKCGDVSTG 96
          RRRC+KAGV+DRCMKYCGICC KCG V +G
Sbjct: 32 RRRCSKAGVRDRCMKYCGICCVKCGCVPSG 61

[Close]
BLAST of CmUC08G158200 vs. ExPASy TrEMBL
Match: W9RJM0 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_011500 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.0e-04
Identity = 27/50 (54.00%), Postives = 33/50 (66.00%), Query Frame = 0 

Query: 46 SSSYLPSRSHFLPGAVLRCLRRRCAKAGVQDRCMKYCGICCEKCGDVSTG 96
          SS + PS ++F  G        RC+KAGV DRCMKYCGICCE+C  V +G
Sbjct: 18 SSFFYPSTAYFQSGFCEDKCTTRCSKAGVLDRCMKYCGICCEQCMCVPSG 67

[Close]
BLAST of CmUC08G158200 vs. ExPASy TrEMBL
Match: A0A6J1K7T2 (peamaclein-like OS=Cucurbita maxima OX=3661 GN=LOC111492448 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-04
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 0 

Query: 68 RCAKAGVQDRCMKYCGICCEKCGDVSTG 96
          RCAKAGVQ+RC+KYCGICCEKCG V +G
Sbjct: 34 RCAKAGVQNRCLKYCGICCEKCGCVPSG 61

[Close]
BLAST of CmUC08G158200 vs. TAIR 10
Match: AT5G59845.1 (Gibberellin-regulated family protein )

HSP 1 Score: 47.4 bits (111), Expect = 1.6e-05
Identity = 18/22 (81.82%), Postives = 20/22 (90.91%), Query Frame = 0 

Query: 68 RCAKAGVQDRCMKYCGICCEKC 90
          RC+KAG QDRC+KYC ICCEKC
Sbjct: 37 RCSKAGRQDRCLKYCNICCEKC 58

[Close]
BLAST of CmUC08G158200 vs. TAIR 10
Match: AT2G14900.1 (Gibberellin-regulated family protein )

HSP 1 Score: 45.4 bits (106), Expect = 5.9e-05
Identity = 17/28 (60.71%), Postives = 23/28 (82.14%), Query Frame = 0 

Query: 68 RCAKAGVQDRCMKYCGICCEKCGDVSTG 96
          RC +AG++DRC+KYCGICC+ C  V +G
Sbjct: 57 RCKEAGMKDRCLKYCGICCKDCQCVPSG 84

[Close]
BLAST of CmUC08G158200 vs. TAIR 10
Match: AT2G39540.1 (Gibberellin-regulated family protein )

HSP 1 Score: 43.9 bits (102), Expect = 1.7e-04
Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = 0 

Query: 68 RCAKAGVQDRCMKYCGICCEKCGDVSTG 96
          RC+KAG  + C+KYC ICC+KC  V +G
Sbjct: 36 RCSKAGQHEECLKYCNICCQKCNCVPSG 63

The following BLAST results are available for this feature:
BLAST of CmUC08G158200 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004142881.11.5e-0583.33peamaclein [Cucumis sativus] >KGN62465.1 hypothetical protein Csa_018588 [Cucumi... [more]
XP_038885998.11.9e-0568.42peamaclein-like [Benincasa hispida][more]
XP_022961995.13.3e-0568.42peamaclein-like [Cucurbita moschata] >KAG7029319.1 Snakin-1 [Cucurbita argyrospe... [more]
KAG6598348.13.3e-0568.42putative LRR receptor-like serine/threonine-protein kinase, partial [Cucurbita a... [more]
XP_023546651.15.6e-0568.42peamaclein [Cucurbita pepo subsp. pepo][more]
BLAST of CmUC08G158200 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
C0HLQ22.0e-0567.74Cypmaclein OS=Cupressus sempervirens OX=13469 PE=1 SV=1[more]
P868882.0e-0571.43Peamaclein OS=Prunus persica OX=3760 PE=1 SV=1[more]
C0HLQ12.6e-0568.97Cypmaclein OS=Cryptomeria japonica OX=3369 PE=1 SV=1[more]
C0HLQ05.8e-0564.52Cypmaclein OS=Juniperus ashei OX=13101 PE=1 SV=1[more]
Q948Z45.8e-0567.86Snakin-1 OS=Solanum tuberosum OX=4113 GN=SN1 PE=1 SV=1[more]
BLAST of CmUC08G158200 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKN77.1e-0683.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354910 PE=3 SV=1[more]
A0A6J1HDT01.6e-0568.42peamaclein-like OS=Cucurbita moschata OX=3662 GN=LOC111462598 PE=3 SV=1[more]
A0A1S3BAP84.6e-0580.00peamaclein-like OS=Cucumis melo OX=3656 GN=LOC103487854 PE=3 SV=1[more]
W9RJM01.0e-0454.00Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_011500 PE=3 SV=1[more]
A0A6J1K7T21.3e-0482.14peamaclein-like OS=Cucurbita maxima OX=3661 GN=LOC111492448 PE=3 SV=1[more]
BLAST of CmUC08G158200 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G59845.11.6e-0581.82Gibberellin-regulated family protein [more]
AT2G14900.15.9e-0560.71Gibberellin-regulated family protein [more]
AT2G39540.11.7e-0457.14Gibberellin-regulated family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003854Gibberellin regulated proteinPFAMPF02704GASAcoord: 66..98
e-value: 1.4E-4
score: 21.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 138..179
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..50
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 142..158

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC08G158200.1CmUC08G158200.1mRNA