CmUC08G152820 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC08G152820
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Serine/arginine-rich splicing factor SC35-like
Location	CmU531Chr08: 22302229 .. 22305973 (-)
RNA-Seq Expression	CmUC08G152820
Synteny	CmUC08G152820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGCCAAATTCCATTAGTTGTAGAGAGAAATGTCGCACTTTGGAAGATCCGGGCCTCCCGATATCCGAGATACCTACTCCCTTCTCGTCCTCAACATCACTTTTCGTATCTCCGACCCCTAATCTTTTTCTTATCTTCAACTTCGTCTCTTTCTCTCTGTTTTTTTTCTTTAATTTCTTGCCCCTTTTTTTCTTGTTTTTTCAGGAACCACCGCCGATGATCTTTACCCCCTTTTCGACAAGTATGGTAAGGTCGTCGATGTCTTCATCCCGAGAGACCGCAGGTTTCTTTCTTTTTTCACTCTCCGTCGCGTTCTAATCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTAATGATTTTTGATGAATCATAGTACGTAATTGGTTGGTGGGTGATTGTTGTTAGGACTGGGGATTCCCGGGGATTTGCGTTTGTTCGATACAAGTATGCGGATGAAGCACAGAAGGCAATTGATAAGCTTGACGGTCAGCTTCAGTTCGACCGAAAACTCACATTAAGCTTGAGATTTTCAATTTAACTTTGCTGCTGTTTTTATGGGAAATCAATTTGGGTTTCTACTTTGCTATCTAGGACGAATGTTGGATGGTAGAGAAATTATGGTTCAGTTCGCTAAGTATGGTCCCAATGCTGAGAAAATGTGAGTTTATGAAAAATTGTTTTAAATGCTTTTGTATGTAATTTTTCATACTCAACTGCTGCACAAGGATGTTTTGATTCTTAAGTTTTGGTTTTTATCAGTCGGAAGGGGAGAGTAATGGAGTCATCATCTAAGACAAGGGGAAGGTCGAGGAGCCGCAGTCCACGTTCAAGGTGAGAGTCCTTGTCTAAATGCATCTGAATTCCTATCAGAGCTCTGGTGAAGAATTTTATATTTTCTTGAGGTAATTAAATTACCCTTATTTACTTGTGAATAATAACAAAAATTCAATGTACTCTTCTGCGTAGTCATTTAGAGTGAGGGAGGTAATGCTATCTTCTCTCTTTATGGATGCAATTTCCTTGGTAGTTCATTTAGGCGGATGACTTGCATTCTTTTTCTCTGCTTTAGTAGAATTGGTGTATATGGTTACACATAGAATTAGCTATGTCGATGTGTATTAATTTAAGCTCCGTTTGGTAACCATTTGGTTTTTGGTTTTTGGTTTTTATTCTGAAAGTTCAGCACATAAACACCATTTTCACCTCTAAAAACTATTGTTTTAATACCTGCTTTCTACTAATGTTTCCAAAAACCAAGTCAAGTTTTGAAAACTAAAAAAAATAGTTTTTAAAAACTTGTTTTGGATTTTATTTATTAAAGAAAAAAACTTGTTTTTGTTTTTGGAAATTGCTTTGAATTCAACTATTTTACTTAAGATAGATGAAAACTATTGTAAGAAATTGAGAGAAAATAGGCTTAATTTTCAAAAACAAAAAACGAAAAACGAAAAATCAAATGGTTACCACGTGGAGTCTTAGTTAATGGTTAATTTTTAGTAAGGACATGTTTTTCATCGATATTGCAAACAATATGAATATTTGAAACACAGGCTTTTTTTTTCAAAATAGACAAACTATAAGGACACGATTTGTAATTATTCCTTCATTTAATGTCTGAGGCATGGAGGAGGTCTAAAATACCAGTGCTGTATAGTGTATTTTTCATCTTGCAAATAGGAAATTCTGGAAAGTCTTTTTCCTTATGTTGGTTAATTAATGTAATCGCTTCTGGCCTCGCCTCGTGGTTTCACCTACGTAAATTTAGTGGTAATACAATGTCTGGTCATTAGTCTCTTGAATCCATGTCATAGATTTTGTGGAATGGAGAGAAGCTATAAACAAAAGGAGTGATGAAAGTAAGCTTGTGGAGGAACCCTTAGGTTTTCAGGGCATTGGACTCTCACCAATGTTTGCGTTACTCAAGCCGACATTCTCGCTTCTGCTTCGCCCACCACTGTGAATATTTTAGACTGGTGGATTACAGTTTTTCCTGAACTAGTTTGATAAGTGAATGCACGCAAGATGATGATGGATATTGTGAATAGTCATGGCAAGATATTCTAGTCTATTGCTTGAAGAAATATACTCAAAATCACGAAGTCATGCTGCTCTTTTTTTATTTCTTTTTCTGGGGGTCACCAATCTATGAAACTACCTTGGAATTTTTCTGAACTTGTATTTGATTAACTGGTTTTGACAAAATTTTATGGGATAAGGAACGGATGGTTAATAAGACTTGTCTTAAATGGAATTTCTTATCATTACAGGCAGTTGATTGTAATCTCATTGTTGCAAGCTGGTTATTCTACCCTTCTCTTATGGATTGCAAAAACATTTCAGGCACCGTGATGACCATAGGGATAGGGATTACAGGAGAAGAAGTCGCAGTAGAAGCCGGGATAGATATGATCGTGATAGACCCCACAGAAGTGAGAGAGACCGCTATCGTAGTAGGAGTCGTAGTGCTAGTCCTGACCGTAGTAAAGATCGTAGGAGGGGAAGAGATGATGATGAACGTCGTAGTGCTAGCCATTCCGATAGAAGGTACACATACATTCTTAATTTTGTTACTTGCACAAAAGGAGGAAAATTTTCAGCTGGAAACTGGAAAGTTTTAGCCATTTTGTTGCATTTGCATGGGCAAGGGGATGGGTGGTCGTTTACTGTTTTATTCACACTTTATTTTATTTTTATTACGTTCTCATGGTAGAGGGTATGTTTACCAAACCATTAAATATCTTTTAGATTACTTGGGAGCAAGCGGTTTCAGGTCGCTAAATATCTTTCAATCCATAATTTTCTTGAGAATAACAACATTAATTCTTCAAAATAGGATTGTGAGATGAGAACATACTAAAAACTAAGTAAAGAACGAGAACAGACTAAAAACTAAGTAAAGAACAGTTATTTGGCCATCATATTCGAAAACTATTGTTTGGAGGTTAAAGACACTGTTGCCTTTTAGTTCTTGAACTTCCATGGAAGTAACAATTTAGTCTTTGTATTTTGTTTATAACGATTTAGTTCACGTGCTTTCAATTTTGTAACAATTTAGTTCTTAAACTTTTATCATGCAACGATTTAGTCTCATTCGCAAAAATTGGCATTAAAATTAATTCCAATTCTTAGTACATGACTACTTAGTTTTATAGTTTATTAACAAATTTGATCTCTTAGTTTATTAATCGTCGTTATAACAATTTTCATGGTAGGGACAAAATCGTTACAAATTGTAGAGTGCAAAGACTAGATTGTTTCTCATTAAAGTTTGATGATTAATTGTTACAAATTTGAATATACATGAACTAAATTGTTACAAACTAAAGTTCAGGGACTAAATGTTTGCTTGTAAGATAAAAAACTGTTTCTGAAATTAGTCTTCGAACAACTCTGCTCATGTTTTTTTCCAAACACATTTTTCATTTAACTTCACAGAAATCACACATTGCCAAGTACCCAGCAAGGTCCTCATAATCATCCATTGTAATTCTTTTCAATTTTGTTTTGTTTTGGGTCTGTATTCTAATTGAAAATGGATTCTATACTGAAGTATGTCGCCCGCCCGACATTCCCCTGATACTCGGAGGAGCATATCTCCACGTAGGACACCACCATCTAGGGGTAGAAGCGACGATGAACTTTCTCCAAAGCGAGATAATGGCTCACCAAATGACAAACCAGTTGATTCTCGAAGTCCATCTCCTGCTAAATCCGATGCTGATGTGAGTTAA

mRNA sequence

TAGCCAAATTCCATTAGTTGTAGAGAGAAATGTCGCACTTTGGAAGATCCGGGCCTCCCGATATCCGAGATACCTACTCCCTTCTCGTCCTCAACATCACTTTTCGAACCACCGCCGATGATCTTTACCCCCTTTTCGACAAGTATGGTAAGGTCGTCGATGTCTTCATCCCGAGAGACCGCAGGACTGGGGATTCCCGGGGATTTGCGTTTGTTCGATACAAGTATGCGGATGAAGCACAGAAGGCAATTGATAAGCTTGACGGACGAATGTTGGATGGTAGAGAAATTATGGTTCAGTTCGCTAAGTATGGTCCCAATGCTGAGAAAATTCGGAAGGGGAGAGTAATGGAGTCATCATCTAAGACAAGGGGAAGGTCGAGGAGCCGCAGTCCACGTTCAAGGCACCGTGATGACCATAGGGATAGGGATTACAGGAGAAGAAGTCGCAGTAGAAGCCGGGATAGATATGATCGTGATAGACCCCACAGAAGTGAGAGAGACCGCTATCGTAGTAGGAGTCGTAGTGCTAGTCCTGACCGTAGTAAAGATCGTAGGAGGGGAAGAGATGATGATGAACGTCGTAGTGCTAGCCATTCCGATAGAAGTATGTCGCCCGCCCGACATTCCCCTGATACTCGGAGGAGCATATCTCCACGTAGGACACCACCATCTAGGGGTAGAAGCGACGATGAACTTTCTCCAAAGCGAGATAATGGCTCACCAAATGACAAACCAGTTGATTCTCGAAGTCCATCTCCTGCTAAATCCGATGCTGATGTGAGTTAA

Coding sequence (CDS)

ATGTCGCACTTTGGAAGATCCGGGCCTCCCGATATCCGAGATACCTACTCCCTTCTCGTCCTCAACATCACTTTTCGAACCACCGCCGATGATCTTTACCCCCTTTTCGACAAGTATGGTAAGGTCGTCGATGTCTTCATCCCGAGAGACCGCAGGACTGGGGATTCCCGGGGATTTGCGTTTGTTCGATACAAGTATGCGGATGAAGCACAGAAGGCAATTGATAAGCTTGACGGACGAATGTTGGATGGTAGAGAAATTATGGTTCAGTTCGCTAAGTATGGTCCCAATGCTGAGAAAATTCGGAAGGGGAGAGTAATGGAGTCATCATCTAAGACAAGGGGAAGGTCGAGGAGCCGCAGTCCACGTTCAAGGCACCGTGATGACCATAGGGATAGGGATTACAGGAGAAGAAGTCGCAGTAGAAGCCGGGATAGATATGATCGTGATAGACCCCACAGAAGTGAGAGAGACCGCTATCGTAGTAGGAGTCGTAGTGCTAGTCCTGACCGTAGTAAAGATCGTAGGAGGGGAAGAGATGATGATGAACGTCGTAGTGCTAGCCATTCCGATAGAAGTATGTCGCCCGCCCGACATTCCCCTGATACTCGGAGGAGCATATCTCCACGTAGGACACCACCATCTAGGGGTAGAAGCGACGATGAACTTTCTCCAAAGCGAGATAATGGCTCACCAAATGACAAACCAGTTGATTCTCGAAGTCCATCTCCTGCTAAATCCGATGCTGATGTGAGTTAA

Protein sequence

MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRDRYDRDRPHRSERDRYRSRSRSASPDRSKDRRRGRDDDERRSASHSDRSMSPARHSPDTRRSISPRRTPPSRGRSDDELSPKRDNGSPNDKPVDSRSPSPAKSDADVS

Homology

[Close]

BLAST of CmUC08G152820 vs. NCBI nr
Match: KAA0064834.1 (serine/arginine-rich splicing factor SC35-like [Cucumis melo var. makuwa])

HSP 1 Score: 448.4 bits (1152), Expect = 4.2e-122
Identity = 243/252 (96.43%), Postives = 249/252 (98.81%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 121 SPRSRHRDDHRDRDYRRRSRSRSRDRYDRDRPHRSERDRYRSRSRSASPDRSKDRRRGRD 180
           SPRSRHRDD+RDRDYRRRSRSRSR+RYDRDRPHRSER+RYRSRSRSASPDRSKDRRRGRD
Sbjct: 121 SPRSRHRDDYRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 181 DDERRSASHSDRSMSPARHSPDTRRSISPRRTPPSRGRSDDELSPKRDNGSPNDKPVDSR 240
           DDERRSASHSDRSMSP RHSPDTRRSISPRRTPPSRGRSD+E SPK DNGSP+DKPVDSR
Sbjct: 181 DDERRSASHSDRSMSPTRHSPDTRRSISPRRTPPSRGRSDNERSPKGDNGSPDDKPVDSR 240

Query: 241 SPSPAKSDADVS 253
           SPSPA+SDADVS
Sbjct: 241 SPSPARSDADVS 252

[Close]

BLAST of CmUC08G152820 vs. NCBI nr
Match: XP_011649457.1 (serine/arginine-rich splicing factor SC35 isoform X2 [Cucumis sativus])

HSP 1 Score: 445.7 bits (1145), Expect = 2.7e-121
Identity = 241/250 (96.40%), Postives = 246/250 (98.40%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 121 SPRSRHRDDHRDRDYRRRSRSRSRDRYDRDRPHRSERDRYRSRSRSASPDRSKDRRRGRD 180
           SPRSRHRDDHRDRDYRRRSRSRSR+RYDRDRPHRSER+RYRSRSRSASPDRSKDRRRGRD
Sbjct: 121 SPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 181 DDERRSASHSDRSMSPARHSPDTRRSISPRRTPPSRGRSDDELSPKRDNGSPNDKPVDSR 240
           DDERRSASHSDRSMSP RHSPDTRRSISPR+TPPSR RSDDE SPK DNGSP+DKPVDSR
Sbjct: 181 DDERRSASHSDRSMSPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSR 240

Query: 241 SPSPAKSDAD 251
           SPSPA+SDAD
Sbjct: 241 SPSPARSDAD 250

[Close]

BLAST of CmUC08G152820 vs. NCBI nr
Match: XP_008445340.1 (PREDICTED: serine/arginine-rich splicing factor SC35-like [Cucumis melo])

HSP 1 Score: 445.3 bits (1144), Expect = 3.6e-121
Identity = 241/250 (96.40%), Postives = 247/250 (98.80%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 121 SPRSRHRDDHRDRDYRRRSRSRSRDRYDRDRPHRSERDRYRSRSRSASPDRSKDRRRGRD 180
           SPRSRHRDD+RDRDYRRRSRSRSR+RYDRDRPHRSER+RYRSRSRSASPDRSKDRRRGRD
Sbjct: 121 SPRSRHRDDYRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 181 DDERRSASHSDRSMSPARHSPDTRRSISPRRTPPSRGRSDDELSPKRDNGSPNDKPVDSR 240
           DDERRSASHSDRSMSP RHSPDTRRSISPRRTPPSRGRSD+E SPK DNGSP+DKPVDSR
Sbjct: 181 DDERRSASHSDRSMSPTRHSPDTRRSISPRRTPPSRGRSDNERSPKGDNGSPDDKPVDSR 240

Query: 241 SPSPAKSDAD 251
           SPSPA+SDAD
Sbjct: 241 SPSPARSDAD 250

[Close]

BLAST of CmUC08G152820 vs. NCBI nr
Match: KAG6598682.1 (Serine/arginine-rich splicing factor SC35, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 440.3 bits (1131), Expect = 1.1e-119
Identity = 239/251 (95.22%), Postives = 246/251 (98.01%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKG+VMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSKARGRSRSR 120

Query: 121 SPRSRHRDDHRDRDYRRRSRSRSRDRYDRDRPHRSERDRYRSRSRSASPDRSKDRRRGRD 180
           SPR RHRDD+RDRDYRRRSRSRSR+R+DRDRPHRSER+RYRSRSRSASPDR KDRRRGRD
Sbjct: 121 SPRPRHRDDYRDRDYRRRSRSRSRERHDRDRPHRSERERYRSRSRSASPDRIKDRRRGRD 180

Query: 181 DDERRSASHSDRSMSPARHSPDTRRSISPRRTPPSRGRSDDELSPKRDNGSPNDKPVDSR 240
           D ERRSASHSDRSMSPARHSPDTRRSISPRRTPPSRGRSDDE SP+RDNGSP+DKPVDSR
Sbjct: 181 DVERRSASHSDRSMSPARHSPDTRRSISPRRTPPSRGRSDDEHSPRRDNGSPDDKPVDSR 240

Query: 241 SPSPAKSDADV 252
           SPSPAKSDADV
Sbjct: 241 SPSPAKSDADV 251

[Close]

BLAST of CmUC08G152820 vs. NCBI nr
Match: XP_031736561.1 (serine/arginine-rich splicing factor SC35 isoform X1 [Cucumis sativus] >KGN62503.2 hypothetical protein Csa_018721 [Cucumis sativus])

HSP 1 Score: 439.1 bits (1128), Expect = 2.6e-119
Identity = 241/256 (94.14%), Postives = 246/256 (96.09%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 121 SPRSRHRDDHRDRDYRRRSRSRSRDRYDRDRPHRSERDRYRSRSRSASPDRSKDRRRGRD 180
           SPRSRHRDDHRDRDYRRRSRSRSR+RYDRDRPHRSER+RYRSRSRSASPDRSKDRRRGRD
Sbjct: 121 SPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 181 DDERRSASHSDR------SMSPARHSPDTRRSISPRRTPPSRGRSDDELSPKRDNGSPND 240
           DDERRSASHSDR      SMSP RHSPDTRRSISPR+TPPSR RSDDE SPK DNGSP+D
Sbjct: 181 DDERRSASHSDRRFYTDFSMSPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDD 240

Query: 241 KPVDSRSPSPAKSDAD 251
           KPVDSRSPSPA+SDAD
Sbjct: 241 KPVDSRSPSPARSDAD 256

[Close]

BLAST of CmUC08G152820 vs. ExPASy Swiss-Prot
Match: Q9FMG4 (Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC35 PE=1 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 7.6e-66
Identity = 172/271 (63.47%), Postives = 194/271 (71.59%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVME---SSSKTRGRS 120
           FVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEKI KGRV+E    S ++R RS
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 --------------------RSRSPRSRHRDDHRDRDYRRRSRSRSRDRYDRDRPHRSER 180
                               RSRSPR R RDD+R++DYR+RSRSRS DR  R+R    +R
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDR--RERHEEKDR 180

Query: 181 D-RYRSRSRSASPDRSKDRRRGRDDDERRSASHSDRSMSPARHSPDTRRSISPRRTPPSR 240
           D R R+RSRSASPD  K R RGR D+E RS S S  S SPAR SP   RS SP++T P+R
Sbjct: 181 DHRRRTRSRSASPD-EKRRVRGRYDNESRSHSRS-LSASPARRSP---RSSSPQKTSPAR 240

Query: 241 GRSDDELSPKRDNGSPNDKPVDSRSPSPAKS 248
                E+SP        DK  + RSPSP +S
Sbjct: 241 -----EVSP--------DKRSNERSPSPRRS 251

[Close]

BLAST of CmUC08G152820 vs. ExPASy Swiss-Prot
Match: P30352 (Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.3e-27
Identity = 101/223 (45.29%), Postives = 128/223 (57.40%), Query Frame = 0


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGRVMESSSKTRGRSRSRS 123
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G        +    RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGSSGYGRRSRS 122

Query: 124 PRSRHRDDHRDRDYRRRSRSRSRDRYDRDRPHRSERDRYRSRSRSASPDRSKDRRRGRDD 183
           PR R R   R R    RSRSRSR RY R +     R R RSRSRS S  RS  R + +  
Sbjct: 123 PRRRRRSRSRSRS---RSRSRSRSRYSRSK----SRSRTRSRSRSTSKSRSARRSKSKSS 182

Query: 184 DERRSASHS---DRSMSP----ARHSPDTRRSISPRRTPPSRG 218
              RS S S    RS SP     R S    RS SP ++P   G
Sbjct: 183 SVSRSRSRSRSRSRSRSPPPTSKRESNSRSRSKSPPKSPEEEG 217

[Close]

BLAST of CmUC08G152820 vs. ExPASy Swiss-Prot
Match: Q3MHR5 (Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3)

HSP 1 Score: 121.3 bits (303), Expect = 1.5e-26
Identity = 101/223 (45.29%), Postives = 127/223 (56.95%), Query Frame = 0


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGRVMESSSKTRGRSRSRS 123
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G             RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRSRHRDDHRDRDYRRRSRSRSRDRYDRDRPHRSERDRYRSRSRSASPDRSKDRRRGRDD 183
           PR R R   R R    RSRSRSR RY R +     R R RSRSRS S  RS  R + +  
Sbjct: 123 PRRRRRSRSRSRS---RSRSRSRSRYSRSK----SRSRTRSRSRSTSKSRSARRSKSKSS 182

Query: 184 DERRSASHS---DRSMSP----ARHSPDTRRSISPRRTPPSRG 218
              RS S S    RS SP     R S    RS SP ++P   G
Sbjct: 183 SVSRSRSRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEG 217

[Close]

BLAST of CmUC08G152820 vs. ExPASy Swiss-Prot
Match: Q01130 (Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=4)

HSP 1 Score: 121.3 bits (303), Expect = 1.5e-26
Identity = 101/223 (45.29%), Postives = 127/223 (56.95%), Query Frame = 0


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGRVMESSSKTRGRSRSRS 123
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G             RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRSRHRDDHRDRDYRRRSRSRSRDRYDRDRPHRSERDRYRSRSRSASPDRSKDRRRGRDD 183
           PR R R   R R    RSRSRSR RY R +     R R RSRSRS S  RS  R + +  
Sbjct: 123 PRRRRRSRSRSRS---RSRSRSRSRYSRSK----SRSRTRSRSRSTSKSRSARRSKSKSS 182

Query: 184 DERRSASHS---DRSMSP----ARHSPDTRRSISPRRTPPSRG 218
              RS S S    RS SP     R S    RS SP ++P   G
Sbjct: 183 SVSRSRSRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEG 217

[Close]

BLAST of CmUC08G152820 vs. ExPASy Swiss-Prot
Match: Q62093 (Serine/arginine-rich splicing factor 2 OS=Mus musculus OX=10090 GN=Srsf2 PE=1 SV=4)

HSP 1 Score: 121.3 bits (303), Expect = 1.5e-26
Identity = 101/223 (45.29%), Postives = 127/223 (56.95%), Query Frame = 0


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGRVMESSSKTRGRSRSRS 123
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G             RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRSRHRDDHRDRDYRRRSRSRSRDRYDRDRPHRSERDRYRSRSRSASPDRSKDRRRGRDD 183
           PR R R   R R    RSRSRSR RY R +     R R RSRSRS S  RS  R + +  
Sbjct: 123 PRRRRRSRSRSRS---RSRSRSRSRYSRSK----SRSRTRSRSRSTSKSRSARRSKSKSS 182

Query: 184 DERRSASHS---DRSMSP----ARHSPDTRRSISPRRTPPSRG 218
              RS S S    RS SP     R S    RS SP ++P   G
Sbjct: 183 SVSRSRSRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEG 217

[Close]

BLAST of CmUC08G152820 vs. ExPASy TrEMBL
Match: A0A5A7VC44 (Serine/arginine-rich splicing factor SC35-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001460 PE=4 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 2.0e-122
Identity = 243/252 (96.43%), Postives = 249/252 (98.81%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 121 SPRSRHRDDHRDRDYRRRSRSRSRDRYDRDRPHRSERDRYRSRSRSASPDRSKDRRRGRD 180
           SPRSRHRDD+RDRDYRRRSRSRSR+RYDRDRPHRSER+RYRSRSRSASPDRSKDRRRGRD
Sbjct: 121 SPRSRHRDDYRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 181 DDERRSASHSDRSMSPARHSPDTRRSISPRRTPPSRGRSDDELSPKRDNGSPNDKPVDSR 240
           DDERRSASHSDRSMSP RHSPDTRRSISPRRTPPSRGRSD+E SPK DNGSP+DKPVDSR
Sbjct: 181 DDERRSASHSDRSMSPTRHSPDTRRSISPRRTPPSRGRSDNERSPKGDNGSPDDKPVDSR 240

Query: 241 SPSPAKSDADVS 253
           SPSPA+SDADVS
Sbjct: 241 SPSPARSDADVS 252

[Close]

BLAST of CmUC08G152820 vs. ExPASy TrEMBL
Match: A0A0A0LQG4 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G345920 PE=4 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 1.3e-121
Identity = 241/250 (96.40%), Postives = 246/250 (98.40%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 121 SPRSRHRDDHRDRDYRRRSRSRSRDRYDRDRPHRSERDRYRSRSRSASPDRSKDRRRGRD 180
           SPRSRHRDDHRDRDYRRRSRSRSR+RYDRDRPHRSER+RYRSRSRSASPDRSKDRRRGRD
Sbjct: 121 SPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 181 DDERRSASHSDRSMSPARHSPDTRRSISPRRTPPSRGRSDDELSPKRDNGSPNDKPVDSR 240
           DDERRSASHSDRSMSP RHSPDTRRSISPR+TPPSR RSDDE SPK DNGSP+DKPVDSR
Sbjct: 181 DDERRSASHSDRSMSPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSR 240

Query: 241 SPSPAKSDAD 251
           SPSPA+SDAD
Sbjct: 241 SPSPARSDAD 250

[Close]

BLAST of CmUC08G152820 vs. ExPASy TrEMBL
Match: A0A1S3BCG4 (serine/arginine-rich splicing factor SC35-like OS=Cucumis melo OX=3656 GN=LOC103488401 PE=4 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 1.7e-121
Identity = 241/250 (96.40%), Postives = 247/250 (98.80%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 121 SPRSRHRDDHRDRDYRRRSRSRSRDRYDRDRPHRSERDRYRSRSRSASPDRSKDRRRGRD 180
           SPRSRHRDD+RDRDYRRRSRSRSR+RYDRDRPHRSER+RYRSRSRSASPDRSKDRRRGRD
Sbjct: 121 SPRSRHRDDYRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 181 DDERRSASHSDRSMSPARHSPDTRRSISPRRTPPSRGRSDDELSPKRDNGSPNDKPVDSR 240
           DDERRSASHSDRSMSP RHSPDTRRSISPRRTPPSRGRSD+E SPK DNGSP+DKPVDSR
Sbjct: 181 DDERRSASHSDRSMSPTRHSPDTRRSISPRRTPPSRGRSDNERSPKGDNGSPDDKPVDSR 240

Query: 241 SPSPAKSDAD 251
           SPSPA+SDAD
Sbjct: 241 SPSPARSDAD 250

[Close]

BLAST of CmUC08G152820 vs. ExPASy TrEMBL
Match: A0A6J1K4H2 (serine/arginine-rich splicing factor SC35-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111492207 PE=4 SV=1)

HSP 1 Score: 438.7 bits (1127), Expect = 1.6e-119
Identity = 238/251 (94.82%), Postives = 246/251 (98.01%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKG+VMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSKARGRSRSR 120

Query: 121 SPRSRHRDDHRDRDYRRRSRSRSRDRYDRDRPHRSERDRYRSRSRSASPDRSKDRRRGRD 180
           SPR RHRDD+RDRDYRRRSRSRSR+R+DRDRPHRSER+RYRSRSRSASPDR KDRRRGRD
Sbjct: 121 SPRPRHRDDYRDRDYRRRSRSRSRERHDRDRPHRSERERYRSRSRSASPDRIKDRRRGRD 180

Query: 181 DDERRSASHSDRSMSPARHSPDTRRSISPRRTPPSRGRSDDELSPKRDNGSPNDKPVDSR 240
           D ERRSASHSDRSMSPARHSPDTRRSISPRRTPPSRGRSD+E SP+RDNGSP+DKPVDSR
Sbjct: 181 DVERRSASHSDRSMSPARHSPDTRRSISPRRTPPSRGRSDEEHSPRRDNGSPDDKPVDSR 240

Query: 241 SPSPAKSDADV 252
           SPSPAKSDADV
Sbjct: 241 SPSPAKSDADV 251

[Close]

BLAST of CmUC08G152820 vs. ExPASy TrEMBL
Match: A0A6J1HFJ8 (serine/arginine-rich splicing factor SC35-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111462587 PE=4 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 3.6e-119
Identity = 238/251 (94.82%), Postives = 245/251 (97.61%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKG+VMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSKARGRSRSR 120

Query: 121 SPRSRHRDDHRDRDYRRRSRSRSRDRYDRDRPHRSERDRYRSRSRSASPDRSKDRRRGRD 180
           SPR RHRDD+RDRDYRRRSRSRSR+R+DRDRPHRSER+RYRSRSRSASPDR KDR RGRD
Sbjct: 121 SPRPRHRDDYRDRDYRRRSRSRSRERHDRDRPHRSERERYRSRSRSASPDRIKDRLRGRD 180

Query: 181 DDERRSASHSDRSMSPARHSPDTRRSISPRRTPPSRGRSDDELSPKRDNGSPNDKPVDSR 240
           D ERRSASHSDRSMSPARHSPDTRRSISPRRTPPSRGRSDDE SP+RDNGSP+DKPVDSR
Sbjct: 181 DVERRSASHSDRSMSPARHSPDTRRSISPRRTPPSRGRSDDEHSPRRDNGSPDDKPVDSR 240

Query: 241 SPSPAKSDADV 252
           SPSPAKSDADV
Sbjct: 241 SPSPAKSDADV 251

[Close]

BLAST of CmUC08G152820 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 251.9 bits (642), Expect = 5.4e-67
Identity = 172/271 (63.47%), Postives = 194/271 (71.59%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVME---SSSKTRGRS 120
           FVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEKI KGRV+E    S ++R RS
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 --------------------RSRSPRSRHRDDHRDRDYRRRSRSRSRDRYDRDRPHRSER 180
                               RSRSPR R RDD+R++DYR+RSRSRS DR  R+R    +R
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDR--RERHEEKDR 180

Query: 181 D-RYRSRSRSASPDRSKDRRRGRDDDERRSASHSDRSMSPARHSPDTRRSISPRRTPPSR 240
           D R R+RSRSASPD  K R RGR D+E RS S S  S SPAR SP   RS SP++T P+R
Sbjct: 181 DHRRRTRSRSASPD-EKRRVRGRYDNESRSHSRS-LSASPARRSP---RSSSPQKTSPAR 240

Query: 241 GRSDDELSPKRDNGSPNDKPVDSRSPSPAKS 248
                E+SP        DK  + RSPSP +S
Sbjct: 241 -----EVSP--------DKRSNERSPSPRRS 251

[Close]

BLAST of CmUC08G152820 vs. TAIR 10
Match: AT5G64200.2 (ortholog of human splicing factor SC35 )

HSP 1 Score: 251.9 bits (642), Expect = 5.4e-67
Identity = 172/271 (63.47%), Postives = 194/271 (71.59%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVME---SSSKTRGRS 120
           FVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEKI KGRV+E    S ++R RS
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 --------------------RSRSPRSRHRDDHRDRDYRRRSRSRSRDRYDRDRPHRSER 180
                               RSRSPR R RDD+R++DYR+RSRSRS DR  R+R    +R
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDR--RERHEEKDR 180

Query: 181 D-RYRSRSRSASPDRSKDRRRGRDDDERRSASHSDRSMSPARHSPDTRRSISPRRTPPSR 240
           D R R+RSRSASPD  K R RGR D+E RS S S  S SPAR SP   RS SP++T P+R
Sbjct: 181 DHRRRTRSRSASPD-EKRRVRGRYDNESRSHSRS-LSASPARRSP---RSSSPQKTSPAR 240

Query: 241 GRSDDELSPKRDNGSPNDKPVDSRSPSPAKS 248
                E+SP        DK  + RSPSP +S
Sbjct: 241 -----EVSP--------DKRSNERSPSPRRS 251

[Close]

BLAST of CmUC08G152820 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 66.6 bits (161), Expect = 3.2e-11
Identity = 96/249 (38.55%), Postives = 121/249 (48.59%), Query Frame = 0


Query: 17  SLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDK 76
           SLLV N+      +DL   F+++G V D+++PRD  TGD RGF FV++    +A  A   
Sbjct: 37  SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96

Query: 77  LDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYR 136
           +DG +L GRE+ V FA+   N +K  + R  E     R R R R+P   +         R
Sbjct: 97  MDGYLLLGRELTVVFAE--ENRKKPTEMRARERGG-GRFRDRRRTPPRYYSRSRSPPPRR 156

Query: 137 RRSRSRSRDRYD----RDRPH----RSER-DRYRSRSRSASPDRSKDR--------RRGR 196
            RSRSRS D Y     R  P     R ER D  RS SRS + D S+ R         R  
Sbjct: 157 GRSRSRSGDYYSPPPRRHHPRSISPREERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSL 216

Query: 197 DDDERRSASHSD-RSMSPARHSPDTRRSISPRRT---PPSRGRSDDELSPKRDNGSPNDK 245
               RRS S S  RS SP   SP   RS+SPRR+    P R R     SP+R   S   +
Sbjct: 217 SPSPRRSISRSPRRSRSP---SPKRNRSVSPRRSISRSPRRSR-----SPRRSRRSYTPE 274

[Close]

BLAST of CmUC08G152820 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 63.2 bits (152), Expect = 3.5e-10
Identity = 85/253 (33.60%), Postives = 127/253 (50.20%), Query Frame = 0


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           FG S   D+    SLLV N+      +DL   F+++G V D+++PRD  TGD RGF F++
Sbjct: 27  FGGSRDSDL--PTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQ 86

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKT-RGRSRSRSP 123
           +    +A +A  ++DG +L GRE+ V FA+   N +K  + R  +   ++ R + R RSP
Sbjct: 87  FMDPADAAEAKHQMDGYLLLGRELTVVFAE--ENRKKPTEMRTRDRGGRSNRFQDRRRSP 146

Query: 124 RSRHRDDHRDRDYRRRSRSRSRDRYDRDRPHRSERDRYRSRSRSASPDRSKDRRRGRDDD 183
               R        RR  RSRSR R     P +      R +SRS SP   +DRR  ++  
Sbjct: 147 PRYSRSP----PPRRGRRSRSRSRGYNSPPAK------RHQSRSVSP---QDRRYEKERS 206

Query: 184 ERRSASHSD---RSMSPAR---HSPDTRRSISPRRT---PPSRGRSDDELSPKRDNGSPN 243
             RS  H+    RS SP R   HS   RRS+SPR+     P + RS   +  +  + +P 
Sbjct: 207 YSRSPPHNGSRVRSGSPGRVKSHSRSPRRSVSPRKNRSYTPEQARSQSPVPRQSRSPTPV 262

Query: 244 DKPVDSRSPSPAK 247
            +   +   SP++
Sbjct: 267 PRGAQNGDRSPSQ 262

[Close]

BLAST of CmUC08G152820 vs. TAIR 10
Match: AT1G55310.2 (SC35-like splicing factor 33 )

HSP 1 Score: 62.8 bits (151), Expect = 4.6e-10
Identity = 77/233 (33.05%), Postives = 100/233 (42.92%), Query Frame = 0


Query: 17  SLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDK 76
           SLLV N+      +DL   F+++G V D+++PRD  TGD RGF FV++    +A  A   
Sbjct: 37  SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96

Query: 77  LDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYR 136
           +DG +L GRE+ V FA+                      R +    R+R R   R RD R
Sbjct: 97  MDGYLLLGRELTVVFAE--------------------ENRKKPTEMRARERGGGRFRDRR 156

Query: 137 RRSRSRSRDRYDRDRPHRSERDRYRSRSRSASPDRSKDRRRGRDDDERRSASHSDRSMSP 196
           R                     RY SRSRS  P R + R R  D        H  RS+SP
Sbjct: 157 RTP------------------PRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRHHPRSISP 216

Query: 197 ARHSPDTRRSISPRRTPPSRGRSDDELSPKRDNGSPNDKPVDSRSPSPAKSDA 250
                D RRS S  R+P S G     L+P R           SRS SP + +A
Sbjct: 217 REERYDGRRSYS--RSPASDGSRGRSLTPVRGK---------SRSLSPTQEEA 220

The following BLAST results are available for this feature:

BLAST of CmUC08G152820 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064834.1	4.2e-122	96.43	serine/arginine-rich splicing factor SC35-like [Cucumis melo var. makuwa]	[more]
XP_011649457.1	2.7e-121	96.40	serine/arginine-rich splicing factor SC35 isoform X2 [Cucumis sativus]	[more]
XP_008445340.1	3.6e-121	96.40	PREDICTED: serine/arginine-rich splicing factor SC35-like [Cucumis melo]	[more]
KAG6598682.1	1.1e-119	95.22	Serine/arginine-rich splicing factor SC35, partial [Cucurbita argyrosperma subsp...	[more]
XP_031736561.1	2.6e-119	94.14	serine/arginine-rich splicing factor SC35 isoform X1 [Cucumis sativus] >KGN62503...	[more]

BLAST of CmUC08G152820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMG4	7.6e-66	63.47	Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC3...	[more]
P30352	5.3e-27	45.29	Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV...	[more]
Q3MHR5	1.5e-26	45.29	Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3	[more]
Q01130	1.5e-26	45.29	Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=...	[more]
Q62093	1.5e-26	45.29	Serine/arginine-rich splicing factor 2 OS=Mus musculus OX=10090 GN=Srsf2 PE=1 SV...	[more]

BLAST of CmUC08G152820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VC44	2.0e-122	96.43	Serine/arginine-rich splicing factor SC35-like OS=Cucumis melo var. makuwa OX=11...	[more]
A0A0A0LQG4	1.3e-121	96.40	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G345920 PE=4 SV...	[more]
A0A1S3BCG4	1.7e-121	96.40	serine/arginine-rich splicing factor SC35-like OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1K4H2	1.6e-119	94.82	serine/arginine-rich splicing factor SC35-like isoform X2 OS=Cucurbita maxima OX...	[more]
A0A6J1HFJ8	3.6e-119	94.82	serine/arginine-rich splicing factor SC35-like isoform X2 OS=Cucurbita moschata ...	[more]

BLAST of CmUC08G152820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64200.1	5.4e-67	63.47	ortholog of human splicing factor SC35	[more]
AT5G64200.2	5.4e-67	63.47	ortholog of human splicing factor SC35	[more]
AT1G55310.1	3.2e-11	38.55	SC35-like splicing factor 33	[more]
AT3G13570.1	3.5e-10	33.60	SC35-like splicing factor 30A	[more]
AT1G55310.2	4.6e-10	33.05	SC35-like splicing factor 33	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..90 e-value: 5.3E-25 score: 99.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 18..87 e-value: 6.4E-21 score: 74.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 16..94 score: 19.570105
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 5..104 e-value: 9.6E-28 score: 99.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 214..234
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..252
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..115
None	No IPR available	PANTHER	PTHR23147:SF156	SERINE/ARGININE-RICH SPLICING FACTOR SC35	coord: 1..250
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..250
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC08G152820.1	CmUC08G152820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding