CmUC08G149870 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC08G149870
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	DNA-directed RNA polymerases I, II, and III subunit RPABC5
Location	CmU531Chr08: 19276708 .. 19278147 (-)
RNA-Seq Expression	CmUC08G149870
Synteny	CmUC08G149870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGATAGGTCAAAGCCCAATGAAAAAAGACTTCAAAAAAGGTAAACGTAAACCTTTAAGAATCCTCGAAGGTGAAATTGGGGTAGCGTCGGTATCGGAGGTGGTTGAGCAGAAAACTCCCAAAACCCTAGAACGTGATCGGAGGCAGCGTCGGAGGGCGGGGCAGAAAGCGAAGATGATCATTCCAGTGCGTTGCTTCACTTGCGGAAAGGTTGAGCATGGAGGACTATGTTGAATTTTGAGTTTAAAATTACGATTTACTGTTATCTATGTTGTGTGTGCCACTGTTTTTGGTTTGCTGCATACGAGGATGACATAGTTTTCATTTAGTCTCAATCAACTCTTAGTTGACTTGGTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTCAGGTGATTGGAAACAAATGGGATCATTACCTTGATCTTCTTCAGGCAGACTATTCAGAAGGGTAATGAAATAACACTCTCGTTCATATTGTCCTTCTTGTTCTTCTGTGTTTTTTTCATACTTAATAACATTATTATCATTATATGTATTGGTTTTTAAATTGTCTCTTAAATTCCCTCTTGATTTTTGAAGATTGATTGTTTGTAGACGGAAGTGCACTCTACATTACTATGGAGATGCTAATGTTTTTTTTTTTTTTTTTTTTCTCTCTCCCCTGTATTAGGGATGCACTTGATGCTCTGGGCTTGGTTCGCTACTGCTGCAGGCGAATGCTCATGACTCATGTTGACCTTATTGAGAAGCTTCTTAATTACAATAGTAATCCCTCCCTCTCTTTCTTTCTCTACATTCGTGCATGAGTTGTTTGATTGTTGATGTACAATTTTGCTGCCCGCTTTAACTGCTTTTTGTTTCAGCTCTGGATAAGTCTGATACCAGTTAGCCAAGGGACGAGTTTTCTGCTTTATCACGTGCAGCCAGATCGACGTTTGTATGGTGTTTGCGTTCAGTTAACAGAAAAGAAAAACTACAGGAATGTTCAGTGCATTGCAGGACTCGAGTTAAGCTATGTCTTGGCGTTCTAGTTTATTTACTTATTGACTCATGCGAACCCAAGTATTTAATCAGTATTTAATCTTGTGTTTATTAGTATTTAGGAGTTGTATATCAGAGCCTTGTACTATTTTCCATAGGATGTAGTTACTGATTTCCGTTTGGTCAGTATTGATGTTTTTATGGTGTTTGCATCCAGTTAAGAGAAAAGAAAAACTATAGGAATATTCAGTGCAGGACTTGAGTTAAGCTATATCTTGGTGTCCCAGTTATTTTACTTATTGATTCATACGAACCCAAGTATTTAATCTTCTTTGTGTTTATTAGTGTTTAGGATTTATATATCAGAGCCATGTACCACTTTCATAGGATGTAGTTACTTACTGACTTCTGTTCAGTCAGTATTGATGTTTCTATGGTGTTTGCATCCAGTTAAG

mRNA sequence

ATGCTGATAGGTCAAAGCCCAATGAAAAAAGACTTCAAAAAAGGTAAACGTAAACCTTTAAGAATCCTCGAAGGTGAAATTGGGGTAGCGTCGGTATCGGAGGTGGTTGAGCAGAAAACTCCCAAAACCCTAGAACGTGATCGGAGGCAGCGTCGGAGGGCGGGGCAGAAAGCGAAGATGATCATTCCAGTGCGTTGCTTCACTTGCGGAAAGGTGATTGGAAACAAATGGGATCATTACCTTGATCTTCTTCAGGCAGACTATTCAGAAGGGGATGCACTTGATGCTCTGGGCTTGGTTCGCTACTGCTGCAGGCGAATGCTCATGACTCATCTCTGGATAAGTCTGATACCAGTTAGCCAAGGGACGAGTTTTCTGCTTTATCACGTGCAGCCAGATCGACGTTTGTATGGTGTTTGCGTTCAGTTAACAGAAAAGAAAAACTACAGGAATGTTCAGTGCATTGCAGGACTCGAGTTAAGCTATGTCTTGGCGTTCTAGTTTATTTACTTATTGACTCATGCGAACCCAAGTATTTAATCAGTATTTAATCTTGTGTTTATTAGTATTTAGGAGTTGTATATCAGAGCCTTGTACTATTTTCCATAGGATGTAGTTACTGATTTCCGTTTGGTCAGTATTGATGTTTTTATGGTGTTTGCATCCAGTTAAGAGAAAAGAAAAACTATAGGAATATTCAGTGCAGGACTTGAGTTAAGCTATATCTTGGTGTCCCAGTTATTTTACTTATTGATTCATACGAACCCAAGTATTTAATCTTCTTTGTGTTTATTAGTGTTTAGGATTTATATATCAGAGCCATGTACCACTTTCATAGGATGTAGTTACTTACTGACTTCTGTTCAGTCAGTATTGATGTTTCTATGGTGTTTGCATCCAGTTAAG

Coding sequence (CDS)

ATGCTGATAGGTCAAAGCCCAATGAAAAAAGACTTCAAAAAAGGTAAACGTAAACCTTTAAGAATCCTCGAAGGTGAAATTGGGGTAGCGTCGGTATCGGAGGTGGTTGAGCAGAAAACTCCCAAAACCCTAGAACGTGATCGGAGGCAGCGTCGGAGGGCGGGGCAGAAAGCGAAGATGATCATTCCAGTGCGTTGCTTCACTTGCGGAAAGGTGATTGGAAACAAATGGGATCATTACCTTGATCTTCTTCAGGCAGACTATTCAGAAGGGGATGCACTTGATGCTCTGGGCTTGGTTCGCTACTGCTGCAGGCGAATGCTCATGACTCATCTCTGGATAAGTCTGATACCAGTTAGCCAAGGGACGAGTTTTCTGCTTTATCACGTGCAGCCAGATCGACGTTTGTATGGTGTTTGCGTTCAGTTAACAGAAAAGAAAAACTACAGGAATGTTCAGTGCATTGCAGGACTCGAGTTAAGCTATGTCTTGGCGTTCTAG

Protein sequence

MLIGQSPMKKDFKKGKRKPLRILEGEIGVASVSEVVEQKTPKTLERDRRQRRRAGQKAKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHLWISLIPVSQGTSFLLYHVQPDRRLYGVCVQLTEKKNYRNVQCIAGLELSYVLAF

Homology

[Close]

BLAST of CmUC08G149870 vs. NCBI nr
Match: RDX74585.1 (DNA-directed RNA polymerase subunit 10-like protein, partial [Mucuna pruriens])

HSP 1 Score: 129.0 bits (323), Expect = 3.7e-26
Identity = 58/62 (93.55%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 60  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHLWISLIPV 119
           MIIPVRCFTCGKVIGNKWD YLDLLQADYSEGDALDALGLVRYCCRRMLMTHLW SLIPV
Sbjct: 1   MIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHLWRSLIPV 60

Query: 120 SQ 122
            +
Sbjct: 61  KK 62

[Close]

BLAST of CmUC08G149870 vs. NCBI nr
Match: VAH65405.1 (unnamed protein product [Triticum turgidum subsp. durum])

HSP 1 Score: 122.9 bits (307), Expect = 2.7e-24
Identity = 54/61 (88.52%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 52  RRAGQKAKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTH 111
           +R G  +KMIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDALGLVRYCCRRMLMTH
Sbjct: 35  KRGGGGSKMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTH 94

Query: 112 L 113
           +
Sbjct: 95  V 95

[Close]

BLAST of CmUC08G149870 vs. NCBI nr
Match: KHG22319.1 (hypothetical protein F383_04492 [Gossypium arboreum])

HSP 1 Score: 121.3 bits (303), Expect = 7.8e-24
Identity = 55/68 (80.88%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 60  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHLWISLIPV 119
           MIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDALGLVRYCCRRMLMTH W +  PV
Sbjct: 1   MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHHWRNQRPV 60

Query: 120 SQGTSFLL 128
            + +S  L
Sbjct: 61  EETSSAYL 68

[Close]

BLAST of CmUC08G149870 vs. NCBI nr
Match: KAF7031339.1 (hypothetical protein CFC21_042683 [Triticum aestivum])

HSP 1 Score: 120.2 bits (300), Expect = 1.7e-23
Identity = 55/76 (72.37%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 60  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHLWISLIPV 119
           MIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDALGLVRYCCRRMLMTH+ +    +
Sbjct: 1   MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 120 SQGTSFLLYHVQPDRR 136
           +  +  +L +  P RR
Sbjct: 61  NYNSKLMLLYNFPWRR 76

[Close]

BLAST of CmUC08G149870 vs. NCBI nr
Match: EXB99107.1 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Morus notabilis])

HSP 1 Score: 119.8 bits (299), Expect = 2.3e-23
Identity = 55/68 (80.88%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 45  ERDRRQRRRAGQKAKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCC 104
           +R R +R +     KMIIPVRCFTCGKVIGNKWD YLDLLQADYSEGDALDALGLVRYCC
Sbjct: 103 QRRRSRREKDENSKKMIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCC 162

Query: 105 RRMLMTHL 113
           RRMLMTH+
Sbjct: 163 RRMLMTHV 170

[Close]

BLAST of CmUC08G149870 vs. ExPASy Swiss-Prot
Match: Q9SYA6 (DNA-directed RNA polymerase subunit 10-like protein OS=Arabidopsis thaliana OX=3702 GN=NRPB10L PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.7e-24
Identity = 48/53 (90.57%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 60  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL 113
           MI+PVRCFTCGKVIGNKWD YL+LLQADY+EGDALDALGLVRYCCRRMLMTH+
Sbjct: 1   MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHV 53

[Close]

BLAST of CmUC08G149870 vs. ExPASy Swiss-Prot
Match: Q8LFJ6 (DNA-directed RNA polymerases II, IV and V subunit 10 OS=Arabidopsis thaliana OX=3702 GN=NRPB10 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.3e-23
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 60  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL 113
           MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTH+
Sbjct: 1   MIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHV 53

[Close]

BLAST of CmUC08G149870 vs. ExPASy Swiss-Prot
Match: Q39290 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Brassica napus OX=3708 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.3e-23
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 60  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL 113
           MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTH+
Sbjct: 1   MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHV 53

[Close]

BLAST of CmUC08G149870 vs. ExPASy Swiss-Prot
Match: Q55AB6 (DNA-directed RNA polymerases I, II, and III subunit rpabc5 OS=Dictyostelium discoideum OX=44689 GN=polr2l PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.9e-21
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 60  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL 113
           MIIPVRCFTCGKVIGNKWD YL LLQ DY+EGDALDAL L RYCCRRML+TH+
Sbjct: 1   MIIPVRCFTCGKVIGNKWDAYLSLLQIDYTEGDALDALCLKRYCCRRMLLTHV 53

[Close]

BLAST of CmUC08G149870 vs. ExPASy Swiss-Prot
Match: Q32P78 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Bos taurus OX=9913 GN=POLR2L PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.9e-21
Identity = 42/53 (79.25%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 60  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL 113
           MIIPVRCFTCGK++GNKW+ YL LLQA+Y+EGDALDALGL RYCCRRML+ H+
Sbjct: 1   MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHV 53

[Close]

BLAST of CmUC08G149870 vs. ExPASy TrEMBL
Match: A0A371F8G5 (DNA-directed RNA polymerase subunit 10-like protein (Fragment) OS=Mucuna pruriens OX=157652 GN=NRPB10L PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.8e-26
Identity = 58/62 (93.55%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 60  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHLWISLIPV 119
           MIIPVRCFTCGKVIGNKWD YLDLLQADYSEGDALDALGLVRYCCRRMLMTHLW SLIPV
Sbjct: 1   MIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHLWRSLIPV 60

Query: 120 SQ 122
            +
Sbjct: 61  KK 62

[Close]

BLAST of CmUC08G149870 vs. ExPASy TrEMBL
Match: A0A446NTG8 (Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_3Av1G210240 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.3e-24
Identity = 54/61 (88.52%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 52  RRAGQKAKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTH 111
           +R G  +KMIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDALGLVRYCCRRMLMTH
Sbjct: 35  KRGGGGSKMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTH 94

Query: 112 L 113
           +
Sbjct: 95  V 95

[Close]

BLAST of CmUC08G149870 vs. ExPASy TrEMBL
Match: M8D4I9 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Aegilops tauschii OX=37682 GN=F775_26628 PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.2e-24
Identity = 53/58 (91.38%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 55  GQKAKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL 113
           G+ +KMIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDALGLVRYCCRRMLMTH+
Sbjct: 135 GRGSKMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHV 192

[Close]

BLAST of CmUC08G149870 vs. ExPASy TrEMBL
Match: A0A453FTM1 (Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.2e-24
Identity = 53/58 (91.38%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 55  GQKAKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL 113
           G+ +KMIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDALGLVRYCCRRMLMTH+
Sbjct: 40  GRGSKMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHV 97

[Close]

BLAST of CmUC08G149870 vs. ExPASy TrEMBL
Match: A0A0B0PD08 (Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_04492 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 3.8e-24
Identity = 55/68 (80.88%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 60  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHLWISLIPV 119
           MIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDALGLVRYCCRRMLMTH W +  PV
Sbjct: 1   MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHHWRNQRPV 60

Query: 120 SQGTSFLL 128
            + +S  L
Sbjct: 61  EETSSAYL 68

[Close]

BLAST of CmUC08G149870 vs. TAIR 10
Match: AT1G61700.1 (RNA polymerases N / 8 kDa subunit )

HSP 1 Score: 112.5 bits (280), Expect = 3.4e-25
Identity = 48/53 (90.57%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 60  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL 113
           MI+PVRCFTCGKVIGNKWD YL+LLQADY+EGDALDALGLVRYCCRRMLMTH+
Sbjct: 1   MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHV 53

[Close]

BLAST of CmUC08G149870 vs. TAIR 10
Match: AT1G11475.1 (RNA polymerases N / 8 kDa subunit )

HSP 1 Score: 110.2 bits (274), Expect = 1.7e-24
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 60  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHL 113
           MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTH+
Sbjct: 1   MIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHV 53

The following BLAST results are available for this feature:

BLAST of CmUC08G149870 vs. NCBI nr


Match Name	E-value	Identity	Description
RDX74585.1	3.7e-26	93.55	DNA-directed RNA polymerase subunit 10-like protein, partial [Mucuna pruriens]	[more]
VAH65405.1	2.7e-24	88.52	unnamed protein product [Triticum turgidum subsp. durum]	[more]
KHG22319.1	7.8e-24	80.88	hypothetical protein F383_04492 [Gossypium arboreum]	[more]
KAF7031339.1	1.7e-23	72.37	hypothetical protein CFC21_042683 [Triticum aestivum]	[more]
EXB99107.1	2.3e-23	80.88	DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Morus notabilis]	[more]

BLAST of CmUC08G149870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYA6	4.7e-24	90.57	DNA-directed RNA polymerase subunit 10-like protein OS=Arabidopsis thaliana OX=3...	[more]
Q8LFJ6	2.3e-23	90.57	DNA-directed RNA polymerases II, IV and V subunit 10 OS=Arabidopsis thaliana OX=...	[more]
Q39290	2.3e-23	90.57	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Brassica napus OX=...	[more]
Q55AB6	2.9e-21	84.91	DNA-directed RNA polymerases I, II, and III subunit rpabc5 OS=Dictyostelium disc...	[more]
Q32P78	4.9e-21	79.25	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Bos taurus OX=9913...	[more]

BLAST of CmUC08G149870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A371F8G5	1.8e-26	93.55	DNA-directed RNA polymerase subunit 10-like protein (Fragment) OS=Mucuna prurien...	[more]
A0A446NTG8	1.3e-24	88.52	Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_3Av1G...	[more]
M8D4I9	2.2e-24	91.38	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Aegilops tauschii ...	[more]
A0A453FTM1	2.2e-24	91.38	Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 S...	[more]
A0A0B0PD08	3.8e-24	80.88	Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_04492 PE=3 SV=1	[more]

BLAST of CmUC08G149870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G61700.1	3.4e-25	90.57	RNA polymerases N / 8 kDa subunit	[more]
AT1G11475.1	1.7e-24	90.57	RNA polymerases N / 8 kDa subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000268	DNA-directed RNA polymerase, subunit N/Rpb10	PFAM	PF01194	RNA_pol_N	coord: 60..112 e-value: 9.3E-28 score: 96.3
IPR000268	DNA-directed RNA polymerase, subunit N/Rpb10	PANTHER	PTHR23431	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 FAMILY MEMBER	coord: 60..112
None	No IPR available	GENE3D	1.10.10.60		coord: 60..120 e-value: 4.6E-31 score: 108.7
None	No IPR available	PANTHER	PTHR23431:SF6	SUBFAMILY NOT NAMED	coord: 60..112
IPR020789	RNA polymerases, subunit N, zinc binding site	PROSITE	PS01112	RNA_POL_N_8KD	coord: 61..70
IPR023580	RNA polymerase subunit RPB10	SUPERFAMILY	46924	RNA polymerase subunit RPB10	coord: 60..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC08G149870.1	CmUC08G149870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006360	transcription by RNA polymerase I
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0042797	tRNA transcription by RNA polymerase III
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005665	RNA polymerase II, core complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0008270	zinc ion binding