CmUC08G149320 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC08G149320
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Unknown protein
Location	CmU531Chr08: 18776216 .. 18777245 (-)
RNA-Seq Expression	CmUC08G149320
Synteny	CmUC08G149320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACCCATCTCCACCATCGTGTCTTTTCTCTTCACTTCTTTCTCTTTTTTTTCTGATCCTTGGCCTGAGGCGTTCTATGGTCTTCCCCTTGACAACTCGCCGCAACTTTGTCTTCTCGGGATTGCAATTTATCAAACAGATACTGCATTCATGTCATAAAATGCATCTCAAGATTCTCAGCAAACCAAGCAGTTGCCTTCTTTCAAGTTTGTAGCAAGTTCCGCCGAAGTTCACTCTGTTGAAGATGAAGACTCATGACATAAGTAATGGTATTTTCATAGTTTTCCTCTATTAAGAATTTGTCAAGAGAAACTTTCATATGTATTAGCCTATTGCAGTGTGGAAGGTCAAAACCTCCAAAAAGACAAAATCATTTGCTTGACAAATATTTCCCGCCGGAATTGGGCCATATGACTGAAGTTACCATCATTGGAGAGCAACGATTGCAATCAGCAAAAACTTCCACAATTTTAATTCTATGATATAGCCCGTTTTTCCTTGCATGGAAATCTTTTTCCAGGTATTCAGCAAACTCATGTAACTAACGCAGGAAAGATGGAGAAAAAAGAACTGCCAAAATTGATCTTTTTTCTTTTTCTTTTTTTCAGATTTATTCAAGCATATATGTTGGTTGCTTCTAACACCGTCCAACGGAAAAAGAAAAGGACAAAAGTAAGGGAAATAGTTAAAAAGAGTTTTCTTTCATTTTTTTTTTTTCATTTAATTGAAAAAAGTAAAAAGTTAACAAGAAGAGCATTCTCATCTAAGTTCAGAAGCCAATGAACAAATTTTATGCTTGGGGGAATTAATTGCCCACAAAATCGATGTATGAATGGAATTTGATACTCCATCCTCCAAGCAATAAAAGGAGACTTCTTCGACCACTCCTTTTATACGCTTACTTACTTGGGTTACTCTCTTCTTCCTTTGTTTTGCACCCTTCCTCACTTCTTTGTTCTTGAGTTTCTAAATTATTGAAGAGCACAAGCAGTTTAGTTCATCAAAGTCACAGGGCAGAGTTGTCTAA

mRNA sequence

ATGGCACCCATCTCCACCATCGTGTCTTTTCTCTTCACTTCTTTCTCTTTTTTTTCTGATCCTTGGCCTGAGGCGTTCTATGGTCTTCCCCTTGACAACTCGCCGCAACTTTGTCTTCTCGGGATTGCAATTTATCAAACAGATACTGCATTCATATTTATTCAAGCATATATGTTGGTTGCTTCTAACACCGTCCAACGGAAAAAGAAAAGGACAAAACACAAGCAGTTTAGTTCATCAAAGTCACAGGGCAGAGTTGTCTAA

Coding sequence (CDS)

ATGGCACCCATCTCCACCATCGTGTCTTTTCTCTTCACTTCTTTCTCTTTTTTTTCTGATCCTTGGCCTGAGGCGTTCTATGGTCTTCCCCTTGACAACTCGCCGCAACTTTGTCTTCTCGGGATTGCAATTTATCAAACAGATACTGCATTCATATTTATTCAAGCATATATGTTGGTTGCTTCTAACACCGTCCAACGGAAAAAGAAAAGGACAAAACACAAGCAGTTTAGTTCATCAAAGTCACAGGGCAGAGTTGTCTAA

Protein sequence

MAPISTIVSFLFTSFSFFSDPWPEAFYGLPLDNSPQLCLLGIAIYQTDTAFIFIQAYMLVASNTVQRKKKRTKHKQFSSSKSQGRVV

Homology

[Close]

BLAST of CmUC08G149320 vs. NCBI nr
Match: KGN47818.1 (hypothetical protein Csa_004141 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 8.0e-12
Identity = 37/52 (71.15%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 1  MAPISTIVSFLFTSFSFFSDPWPEAFYGLPLDNSPQLCLLGIAIYQTDTAFI 53
          MAPISTI+SFL +S SF SDPWPEAFYGLPL++S QL L+G AI+ TDTA +
Sbjct: 25 MAPISTILSFLLSSLSFLSDPWPEAFYGLPLEHSAQLSLIGYAIFHTDTAIV 76

[Close]

BLAST of CmUC08G149320 vs. NCBI nr
Match: KAA0036462.1 (hypothetical protein E6C27_scaffold147G00310 [Cucumis melo var. makuwa] >TYK00026.1 hypothetical protein E5676_scaffold360G00710 [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 4.1e-08
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 1  MAPISTIVSFLFTSFSFFSDPWPEAFYGLPLDNSPQLCLLGIAI 45
          MAPISTI+SFL +S SF SDPWPEAFYGLPL++S QL L+G  +
Sbjct: 1  MAPISTILSFLLSSLSFLSDPWPEAFYGLPLEHSAQLSLIGFLL 44

[Close]

BLAST of CmUC08G149320 vs. ExPASy TrEMBL
Match: A0A0A0KE34 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G405315 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.9e-12
Identity = 37/52 (71.15%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 1  MAPISTIVSFLFTSFSFFSDPWPEAFYGLPLDNSPQLCLLGIAIYQTDTAFI 53
          MAPISTI+SFL +S SF SDPWPEAFYGLPL++S QL L+G AI+ TDTA +
Sbjct: 25 MAPISTILSFLLSSLSFLSDPWPEAFYGLPLEHSAQLSLIGYAIFHTDTAIV 76

[Close]

BLAST of CmUC08G149320 vs. ExPASy TrEMBL
Match: A0A5D3BP26 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00710 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.0e-08
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 1  MAPISTIVSFLFTSFSFFSDPWPEAFYGLPLDNSPQLCLLGIAI 45
          MAPISTI+SFL +S SF SDPWPEAFYGLPL++S QL L+G  +
Sbjct: 1  MAPISTILSFLLSSLSFLSDPWPEAFYGLPLEHSAQLSLIGFLL 44

The following BLAST results are available for this feature:

BLAST of CmUC08G149320 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47818.1	8.0e-12	71.15	hypothetical protein Csa_004141 [Cucumis sativus]	[more]
KAA0036462.1	4.1e-08	70.45	hypothetical protein E6C27_scaffold147G00310 [Cucumis melo var. makuwa] >TYK0002...	[more]

BLAST of CmUC08G149320 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC08G149320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KE34	3.9e-12	71.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G405315 PE=4 SV=1	[more]
A0A5D3BP26	2.0e-08	70.45	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CmUC08G149320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC08G149320.1	CmUC08G149320.1	mRNA