CmUC08G147180 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC08G147180
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	DUF4219 domain-containing protein
Location	CmU531Chr08: 15794267 .. 15794746 (-)
RNA-Seq Expression	CmUC08G147180
Synteny	CmUC08G147180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTATGGAAACAACATTTGTATAGACAAGCTTATCGGTGATAATTATAGCTACTGGAGGCTATGTATGGAAGCTTTTCTTCAAGTACAAGATTTGTGGGATCTTATTTCTAGTGATGATTTAATTCCAAAAGATACTCTGGAGAATGTTGAGGTGCGGAAAAAGTGGAAGGTCAAGTGTAGCAAGACTTTATTTGTTTTGCAAACTTCTATTAGTAAGGATCGAGCATGTTCGTGATAAGAAGTCTCCAAACAAAGTGTGGGAGCCACTTGAAAGGTTGTTCACTCAGAAGTATACAACGAGATTGCAGTATTTGGAGAACGAAAACTTGCTAGAACAACTCAAGGTAATTTTTCAGTTTCAAAATATTTTCTAATAATTAAAACTTTATGTTCAGAAATTAAAGAATTGGACAAAAAGGAGTTTGTTAGTAATGCTCGTTTGTGTCGTTATCTTACCCGTGGATTGCGAATGTAG

mRNA sequence

ATGAACTATGGAAACAACATTTGTATAGACAAGCTTATCGGTGATAATTATAGCTACTGGAGGCTATGTATGGAAGCTTTTCTTCAAGTACAAGATTTGTGGGATCTTATTTCTAGTGATGATTTAATTCCAAAAGATACTCTGGAGAATGTTGAGGTGCGGAAAAAGTGGAAGGTCAAGTGTAGCAAGACTTTATTTGTTGTTCACTCAGAAGTATACAACGAGATTGCAGTATTTGGAGAACGAAAACTTGCTAGAACAACTCAAGGTAATTTTTCAGTTTCAAAATATTTTCTAATAATTAAAACTTTATGTTCAGAAATTAAAGAATTGGACAAAAAGGAGTTTGTTAGTAATGCTCGTTTGTGTCGTTATCTTACCCGTGGATTGCGAATGTAG

Coding sequence (CDS)

ATGAACTATGGAAACAACATTTGTATAGACAAGCTTATCGGTGATAATTATAGCTACTGGAGGCTATGTATGGAAGCTTTTCTTCAAGTACAAGATTTGTGGGATCTTATTTCTAGTGATGATTTAATTCCAAAAGATACTCTGGAGAATGTTGAGGTGCGGAAAAAGTGGAAGGTCAAGTGTAGCAAGACTTTATTTGTTGTTCACTCAGAAGTATACAACGAGATTGCAGTATTTGGAGAACGAAAACTTGCTAGAACAACTCAAGGTAATTTTTCAGTTTCAAAATATTTTCTAATAATTAAAACTTTATGTTCAGAAATTAAAGAATTGGACAAAAAGGAGTTTGTTAGTAATGCTCGTTTGTGTCGTTATCTTACCCGTGGATTGCGAATGTAG

Protein sequence

MNYGNNICIDKLIGDNYSYWRLCMEAFLQVQDLWDLISSDDLIPKDTLENVEVRKKWKVKCSKTLFVVHSEVYNEIAVFGERKLARTTQGNFSVSKYFLIIKTLCSEIKELDKKEFVSNARLCRYLTRGLRM

Homology

[Close]

BLAST of CmUC08G147180 vs. NCBI nr
Match: KAA8540328.1 (hypothetical protein F0562_024753 [Nyssa sinensis])

HSP 1 Score: 155.2 bits (391), Expect = 3.9e-34
Identity = 82/160 (51.25%), Postives = 103/160 (64.38%), Query Frame = 0


Query: 1   MNYGNNICIDKLIGDNYSYWRLCMEAFLQVQDLWDLISSDD-LIPKDTLENVEVRKKWKV 60
           MN G+++ IDKL+G+NYSYW+LCMEA+LQ QDLWDLIS DD +IP+DT +N E+R+KWK+
Sbjct: 1   MNGGSSVSIDKLVGNNYSYWKLCMEAYLQGQDLWDLISGDDVVIPEDTPQNAELRRKWKI 60

Query: 61  KCSKTLFVVHSEVYNEI----------------------------AVFGERKLARTTQGN 120
           KC K LF + + +  E                               F E +LA  TQ N
Sbjct: 61  KCGKALFALRTSISQEYIQHVRDGKSPKQVWETLERLFTQKNTMRLQFLENQLAGMTQDN 120

Query: 121 FSVSKYFLIIKTLCSEIKELDKKEFVSNARLCRYLTRGLR 132
            S+S+YFL IKTLCSEI ELD +E VS+ARL RYL RGLR
Sbjct: 121 LSISEYFLKIKTLCSEISELDTEEPVSDARLRRYLIRGLR 160

[Close]

BLAST of CmUC08G147180 vs. NCBI nr
Match: KAA8549541.1 (hypothetical protein F0562_001441 [Nyssa sinensis])

HSP 1 Score: 154.5 bits (389), Expect = 6.6e-34
Identity = 81/160 (50.62%), Postives = 103/160 (64.38%), Query Frame = 0


Query: 1   MNYGNNICIDKLIGDNYSYWRLCMEAFLQVQDLWDLISSDD-LIPKDTLENVEVRKKWKV 60
           MN G+++ +DKL+G+NYSYW+LCMEA+LQ QDLWDLIS DD +IP+DT +N E+R+KWK+
Sbjct: 1   MNGGSSVSVDKLVGNNYSYWKLCMEAYLQGQDLWDLISGDDVVIPEDTPKNAELRRKWKI 60

Query: 61  KCSKTLFVVHSEVYNEI----------------------------AVFGERKLARTTQGN 120
           KC K LF + + +  E                               F E +LA  TQ N
Sbjct: 61  KCGKALFALRTSISQEYIQHVRDGKSPKQVWETLERLFTQKNMMRLQFLENQLAGMTQDN 120

Query: 121 FSVSKYFLIIKTLCSEIKELDKKEFVSNARLCRYLTRGLR 132
            S+S+YFL IKTLCSEI ELD +E VS+ARL RYL RGLR
Sbjct: 121 LSISEYFLKIKTLCSEISELDTEEPVSDARLRRYLIRGLR 160

[Close]

BLAST of CmUC08G147180 vs. NCBI nr
Match: RWR74934.1 (Integrase, catalytic core [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 145.6 bits (366), Expect = 3.1e-31
Identity = 74/160 (46.25%), Postives = 101/160 (63.12%), Query Frame = 0


Query: 1   MNYGNNICIDKLIGDNYSYWRLCMEAFLQVQDLWDLISSDD-LIPKDTLENVEVRKKWKV 60
           MN G+N+ IDKL+G+NY+YW+LCMEA+LQ QDLWDLIS D+ +IP+DT +N ++ +KWK+
Sbjct: 1   MNGGSNVSIDKLVGNNYNYWKLCMEAYLQGQDLWDLISGDNAVIPEDTSQNADLWRKWKI 60

Query: 61  KCSKTLFVVHSEVYNEIAV----------------------------FGERKLARTTQGN 120
           KC K LF + + +  +                               + E +LA  TQG 
Sbjct: 61  KCGKALFALRTSISQDYIARVRDVSSPKQVWEILERLFTQKNTMRLQYLENELAGMTQGT 120

Query: 121 FSVSKYFLIIKTLCSEIKELDKKEFVSNARLCRYLTRGLR 132
            S+ +YFL +KTLC+EI ELD +E VS+ARL RYL RGLR
Sbjct: 121 LSIPEYFLKVKTLCAEISELDTEEPVSDARLHRYLIRGLR 160

[Close]

BLAST of CmUC08G147180 vs. NCBI nr
Match: DAD33270.1 (TPA_asm: hypothetical protein HUJ06_012121 [Nelumbo nucifera])

HSP 1 Score: 144.8 bits (364), Expect = 5.2e-31
Identity = 73/146 (50.00%), Postives = 95/146 (65.07%), Query Frame = 0


Query: 5   NNICIDKLIGDNYSYWRLCMEAFLQVQDLWDLISSDD-LIPKDTLENVEVRKKWKVKCSK 64
           +NIC+DKL+G+NYSYW+LCMEA+LQ QDLWDLI+SD+ +IP D  +  E+R+KWK+KC K
Sbjct: 8   SNICVDKLVGNNYSYWKLCMEAYLQGQDLWDLIASDEAVIPADNPQIAELRRKWKIKCGK 67

Query: 65  TLFVVHSEVYNEI------------------AVFGERKLARTTQGNFSVSKYFLIIKTLC 124
            LF + +    E                    +F +R   R  QGN S+ +YFL I+TLC
Sbjct: 68  ALFALRTSTSKEYIEHVCDLKSPKQLWETLERLFTQRNTMRMIQGNLSILEYFLKIETLC 127

Query: 125 SEIKELDKKEFVSNARLCRYLTRGLR 132
           SEI ELD +E VS+A L  YL RGLR
Sbjct: 128 SEISELDTEEPVSDAHLHHYLIRGLR 153

[Close]

BLAST of CmUC08G147180 vs. NCBI nr
Match: KAA8549858.1 (hypothetical protein F0562_001542 [Nyssa sinensis])

HSP 1 Score: 134.4 bits (337), Expect = 7.0e-28
Identity = 75/160 (46.88%), Postives = 99/160 (61.88%), Query Frame = 0


Query: 1   MNYGNNICIDKLIGDNYSYWRLCMEAFLQVQDLWDLISSDD-LIPKDTLENVEVRKKWKV 60
           MN G+++ +DKL+G+NYSY +LCMEA+LQ Q+LWDLIS DD +I +DT +NVE+R+KWK+
Sbjct: 1   MNGGSSVSVDKLVGNNYSYRKLCMEAYLQGQNLWDLISGDDVVILEDTPQNVELRRKWKI 60

Query: 61  KCSKTLFVVHSEVYNEI----------------------------AVFGERKLARTTQGN 120
           K  K LF + + +  E                               F + +LA  TQ N
Sbjct: 61  KYGKALFALRTSISQEYIQHVRDGKSPKQVWKTLERLFTQKNTMRLQFLKNELAGMTQDN 120

Query: 121 FSVSKYFLIIKTLCSEIKELDKKEFVSNARLCRYLTRGLR 132
            S+ +YFL IKTLCSEI ELD +E VS+ARL RYL  GLR
Sbjct: 121 LSILEYFLKIKTLCSEISELDTEEPVSDARLHRYLILGLR 160

[Close]

BLAST of CmUC08G147180 vs. ExPASy TrEMBL
Match: A0A5J5BCB3 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_024753 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.9e-34
Identity = 82/160 (51.25%), Postives = 103/160 (64.38%), Query Frame = 0


Query: 1   MNYGNNICIDKLIGDNYSYWRLCMEAFLQVQDLWDLISSDD-LIPKDTLENVEVRKKWKV 60
           MN G+++ IDKL+G+NYSYW+LCMEA+LQ QDLWDLIS DD +IP+DT +N E+R+KWK+
Sbjct: 1   MNGGSSVSIDKLVGNNYSYWKLCMEAYLQGQDLWDLISGDDVVIPEDTPQNAELRRKWKI 60

Query: 61  KCSKTLFVVHSEVYNEI----------------------------AVFGERKLARTTQGN 120
           KC K LF + + +  E                               F E +LA  TQ N
Sbjct: 61  KCGKALFALRTSISQEYIQHVRDGKSPKQVWETLERLFTQKNTMRLQFLENQLAGMTQDN 120

Query: 121 FSVSKYFLIIKTLCSEIKELDKKEFVSNARLCRYLTRGLR 132
            S+S+YFL IKTLCSEI ELD +E VS+ARL RYL RGLR
Sbjct: 121 LSISEYFLKIKTLCSEISELDTEEPVSDARLRRYLIRGLR 160

[Close]

BLAST of CmUC08G147180 vs. ExPASy TrEMBL
Match: A0A5J5C7C2 (DUF4219 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_001441 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 3.2e-34
Identity = 81/160 (50.62%), Postives = 103/160 (64.38%), Query Frame = 0


Query: 1   MNYGNNICIDKLIGDNYSYWRLCMEAFLQVQDLWDLISSDD-LIPKDTLENVEVRKKWKV 60
           MN G+++ +DKL+G+NYSYW+LCMEA+LQ QDLWDLIS DD +IP+DT +N E+R+KWK+
Sbjct: 1   MNGGSSVSVDKLVGNNYSYWKLCMEAYLQGQDLWDLISGDDVVIPEDTPKNAELRRKWKI 60

Query: 61  KCSKTLFVVHSEVYNEI----------------------------AVFGERKLARTTQGN 120
           KC K LF + + +  E                               F E +LA  TQ N
Sbjct: 61  KCGKALFALRTSISQEYIQHVRDGKSPKQVWETLERLFTQKNMMRLQFLENQLAGMTQDN 120

Query: 121 FSVSKYFLIIKTLCSEIKELDKKEFVSNARLCRYLTRGLR 132
            S+S+YFL IKTLCSEI ELD +E VS+ARL RYL RGLR
Sbjct: 121 LSISEYFLKIKTLCSEISELDTEEPVSDARLRRYLIRGLR 160

[Close]

BLAST of CmUC08G147180 vs. ExPASy TrEMBL
Match: A0A443N8T5 (Integrase, catalytic core OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_00329300 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.5e-31
Identity = 74/160 (46.25%), Postives = 101/160 (63.12%), Query Frame = 0


Query: 1   MNYGNNICIDKLIGDNYSYWRLCMEAFLQVQDLWDLISSDD-LIPKDTLENVEVRKKWKV 60
           MN G+N+ IDKL+G+NY+YW+LCMEA+LQ QDLWDLIS D+ +IP+DT +N ++ +KWK+
Sbjct: 1   MNGGSNVSIDKLVGNNYNYWKLCMEAYLQGQDLWDLISGDNAVIPEDTSQNADLWRKWKI 60

Query: 61  KCSKTLFVVHSEVYNEIAV----------------------------FGERKLARTTQGN 120
           KC K LF + + +  +                               + E +LA  TQG 
Sbjct: 61  KCGKALFALRTSISQDYIARVRDVSSPKQVWEILERLFTQKNTMRLQYLENELAGMTQGT 120

Query: 121 FSVSKYFLIIKTLCSEIKELDKKEFVSNARLCRYLTRGLR 132
            S+ +YFL +KTLC+EI ELD +E VS+ARL RYL RGLR
Sbjct: 121 LSIPEYFLKVKTLCAEISELDTEEPVSDARLHRYLIRGLR 160

[Close]

BLAST of CmUC08G147180 vs. ExPASy TrEMBL
Match: A0A5J5C3K7 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_001542 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 3.4e-28
Identity = 75/160 (46.88%), Postives = 99/160 (61.88%), Query Frame = 0


Query: 1   MNYGNNICIDKLIGDNYSYWRLCMEAFLQVQDLWDLISSDD-LIPKDTLENVEVRKKWKV 60
           MN G+++ +DKL+G+NYSY +LCMEA+LQ Q+LWDLIS DD +I +DT +NVE+R+KWK+
Sbjct: 1   MNGGSSVSVDKLVGNNYSYRKLCMEAYLQGQNLWDLISGDDVVILEDTPQNVELRRKWKI 60

Query: 61  KCSKTLFVVHSEVYNEI----------------------------AVFGERKLARTTQGN 120
           K  K LF + + +  E                               F + +LA  TQ N
Sbjct: 61  KYGKALFALRTSISQEYIQHVRDGKSPKQVWKTLERLFTQKNTMRLQFLKNELAGMTQDN 120

Query: 121 FSVSKYFLIIKTLCSEIKELDKKEFVSNARLCRYLTRGLR 132
            S+ +YFL IKTLCSEI ELD +E VS+ARL RYL  GLR
Sbjct: 121 LSILEYFLKIKTLCSEISELDTEEPVSDARLHRYLILGLR 160

[Close]

BLAST of CmUC08G147180 vs. ExPASy TrEMBL
Match: A0A1U8HD73 (uncharacterized protein LOC107876762 OS=Capsicum annuum OX=4072 GN=LOC107876762 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 4.2e-26
Identity = 69/152 (45.39%), Postives = 91/152 (59.87%), Query Frame = 0


Query: 9   IDKLIGDNYSYWRLCMEAFLQVQDLWDLI-SSDDLIPKDTLENVEVRKKWKVKCSKTLF- 68
           I+KLIG NY YWR+CMEA+LQ QDLW+LI  +D +IP +T ENVE R+KWK+KC K LF 
Sbjct: 13  IEKLIGTNYKYWRMCMEAYLQGQDLWNLIVGTDSIIPTNTPENVESRRKWKIKCEKALFA 72

Query: 69  ----------------VVHSEVYNEI-----------AVFGERKLARTTQGNFSVSKYFL 128
                           V   EV++ +               E +LA   QG  S+S YFL
Sbjct: 73  LRIFISKEFIDHVRDNVSQKEVWDTLERLFTKKNTARLQLLENELAMLQQGGMSISDYFL 132

Query: 129 IIKTLCSEIKELDKKEFVSNARLCRYLTRGLR 132
            +K++C+EI E+D KE +S +RL RYL RGL+
Sbjct: 133 RVKSICAEISEIDPKEKISESRLRRYLIRGLK 164

The following BLAST results are available for this feature:

BLAST of CmUC08G147180 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA8540328.1	3.9e-34	51.25	hypothetical protein F0562_024753 [Nyssa sinensis]	[more]
KAA8549541.1	6.6e-34	50.63	hypothetical protein F0562_001441 [Nyssa sinensis]	[more]
RWR74934.1	3.1e-31	46.25	Integrase, catalytic core [Cinnamomum micranthum f. kanehirae]	[more]
DAD33270.1	5.2e-31	50.00	TPA_asm: hypothetical protein HUJ06_012121 [Nelumbo nucifera]	[more]
KAA8549858.1	7.0e-28	46.88	hypothetical protein F0562_001542 [Nyssa sinensis]	[more]

BLAST of CmUC08G147180 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC08G147180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5J5BCB3	1.9e-34	51.25	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_024753 PE=4 SV=1	[more]
A0A5J5C7C2	3.2e-34	50.63	DUF4219 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_001441 PE...	[more]
A0A443N8T5	1.5e-31	46.25	Integrase, catalytic core OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKA...	[more]
A0A5J5C3K7	3.4e-28	46.88	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_001542 PE=4 SV=1	[more]
A0A1U8HD73	4.2e-26	45.39	uncharacterized protein LOC107876762 OS=Capsicum annuum OX=4072 GN=LOC107876762 ...	[more]

BLAST of CmUC08G147180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025314	Domain of unknown function DUF4219	PFAM	PF13961	DUF4219	coord: 14..37 e-value: 4.6E-9 score: 35.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC08G147180.1	CmUC08G147180.1	mRNA