CmUC08G146540 (gene) Watermelon (USVL531) v1

Overview
NameCmUC08G146540
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionZinc finger BED domain-containing protein RICESLEEPER 2-like
LocationCmU531Chr08: 13456052 .. 13457175 (+)
RNA-Seq ExpressionCmUC08G146540
SyntenyCmUC08G146540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCCATGAGTTCTCTCTCTCTCCTTCTCAATCTATTGTGTTCGTGTATCGTTTATCTTCATCGCATACTCCCACGTACGTAGAGTCACACACGCGGCACATAGTCCTCCGTCCATCATCAATCTCTCCTTCCCAATCTATCCGTTTGTCGATCTCTCCATCTTTAGTTATGTCCTCAGTCCTCCGTCCGTCGATCTCTCCGTCCCGATCTATCCGTCCGTCGATCTCCCATCTCTCCGTCTCAGTCTATTCCGTTCGTTGGGTGGTAAGGTGCTTCTCTATTTTTTTCCTTAGGTGCCTTAGTTCCCTCTTGCTTGATGTCTCAGTAGTAAAAAAAAATCTTAACTTCCTATTGCTTGTTTGACATTTTTTAACCTTAAAATTCAATTAAAAAAATAATTAAATAACTTTTAGCAACAAATTTGAACCTTATAGTTAATTGGAAAATTATCTTAAATGGCAAAACTGTTAAAAATATTTACAACTAATAGTAAAAAACACAGTCTATTTGCAATAGACCGCGATAGACTATTATTTGTGTCTATCATGACACAAATAATAGTCTATCGTAGTCTATCGAAATTTTGCAATATTTGTAAATATTTTGGTTCCTTTTACTATATTTGAAAAGAGCCCTAATTAATTTAGTGTTTGTCAAATTTACATTCATCCCCACCAACTATTTTGACTTAATTTTTTTCAACCTCATAGTATCTCAAGAATAGTTGATTCTCTAAAGCCGTCACCACGGACACAGAATCAGACACAACATAATCACCTTTATCCAACGTCTTAGTGAGTTAAATATTTTAATTTCTATTGTATTGTGATTACTTTTTATACATGGGTTATGTATACATGAGTTGTTATGTTTGGTTTTCTGAGTCATAATAGGTAAGTGTAAGTTGGTTGTCATTTACTAGTTTCATTTATTTATTTTTATAGATATCCAGCAGTAGTGGAAATGCAAGGGGTACCGATAATAATGAAATGTATCCTCCTCCTCCTCCTCCTAATATAAGTCAAACTACTAAACATATACCACCTTTACCTCCCAAGTCCAATAGAAAGAAACCTAAGAAACCAACTTGTTCTGTGTGGGATCATTTCACAAAAATATAA

mRNA sequence

ATGCCCCATGAGTTCTCTCTCTCTCCTTCTCAATCTATTGTGTTCGTGTATCGTTTATCTTCATCGCATACTCCCACGTACGTAGAGTCACACACGCGGCACATAGTCCTCCGTCCATCATCAATCTCTCCTTCCCAATCTATCCGTTTGTCGATCTCTCCATCTTTAGTTATGTCCTCAGTCCTCCGTCCGTCGATCTCTCCGTCCCGATCTATCCGTCCGTCGATCTCCCATCTCTCCGTCTCAGTCTATTCCGTTCGTTGGGTGATATCCAGCAGTAGTGGAAATGCAAGGGGTACCGATAATAATGAAATGTATCCTCCTCCTCCTCCTCCTAATATAAGTCAAACTACTAAACATATACCACCTTTACCTCCCAAGTCCAATAGAAAGAAACCTAAGAAACCAACTTGTTCTGTGTGGGATCATTTCACAAAAATATAA

Coding sequence (CDS)

ATGCCCCATGAGTTCTCTCTCTCTCCTTCTCAATCTATTGTGTTCGTGTATCGTTTATCTTCATCGCATACTCCCACGTACGTAGAGTCACACACGCGGCACATAGTCCTCCGTCCATCATCAATCTCTCCTTCCCAATCTATCCGTTTGTCGATCTCTCCATCTTTAGTTATGTCCTCAGTCCTCCGTCCGTCGATCTCTCCGTCCCGATCTATCCGTCCGTCGATCTCCCATCTCTCCGTCTCAGTCTATTCCGTTCGTTGGGTGATATCCAGCAGTAGTGGAAATGCAAGGGGTACCGATAATAATGAAATGTATCCTCCTCCTCCTCCTCCTAATATAAGTCAAACTACTAAACATATACCACCTTTACCTCCCAAGTCCAATAGAAAGAAACCTAAGAAACCAACTTGTTCTGTGTGGGATCATTTCACAAAAATATAA

Protein sequence

MPHEFSLSPSQSIVFVYRLSSSHTPTYVESHTRHIVLRPSSISPSQSIRLSISPSLVMSSVLRPSISPSRSIRPSISHLSVSVYSVRWVISSSSGNARGTDNNEMYPPPPPPNISQTTKHIPPLPPKSNRKKPKKPTCSVWDHFTKI
Homology
[Close]
BLAST of CmUC08G146540 vs. NCBI nr
Match: KAA0056523.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa] >TYK12093.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 2.4e-13
Identity = 43/58 (74.14%), Postives = 47/58 (81.03%), Query Frame = 0 

Query: 90  ISSSSGNARGTDNNEMYPPPPPPNISQTTKHIPPLPPKSNRKKPKKPTCSVWDHFTKI 148
           + SSS NA  T NNEM  PPPPPNISQTTKH+PPLPPKS RK+P K T SVWDHFTK+
Sbjct: 40  MDSSSENASATGNNEM--PPPPPNISQTTKHLPPLPPKSKRKRPNKKTSSVWDHFTKM 95

[Close]
BLAST of CmUC08G146540 vs. NCBI nr
Match: KAA0056011.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 4.6e-12
Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 0 

Query: 88  WVISSSSGNARGTDNNEMYP--PPPPPNISQTTKHIPPLPPKSNRKKPKKPTCSVWDHFT 147
           + + SSS NA  T NNEM    PPPPPN SQTT+H+PPLPPKS RK+P K T SVWDHFT
Sbjct: 15  FTMDSSSENASATGNNEMPSPLPPPPPNTSQTTQHVPPLPPKSKRKRPNKQTSSVWDHFT 74

[Close]
BLAST of CmUC08G146540 vs. NCBI nr
Match: TYK15892.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 7.9e-12
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 0 

Query: 90  ISSSSGNARGTDNNEMYP--PPPPPNISQTTKHIPPLPPKSNRKKPKKPTCSVWDHFTKI 148
           + SSS NA  T NNEM    PPPPPN SQTT+H+PPLPPKS RK+P K T SVWDHFTK+
Sbjct: 1   MDSSSENASATGNNEMPSPLPPPPPNTSQTTQHVPPLPPKSKRKRPNKQTSSVWDHFTKM 60

[Close]
BLAST of CmUC08G146540 vs. NCBI nr
Match: TYK26463.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 7.9e-12
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 0 

Query: 90  ISSSSGNARGTDNNEMYP--PPPPPNISQTTKHIPPLPPKSNRKKPKKPTCSVWDHFTKI 148
           + SSS NA  T NNEM    PPPPPN SQTT+H+PPLPPKS RK+P K T SVWDHFTK+
Sbjct: 1   MDSSSENASATGNNEMPSPLPPPPPNTSQTTQHVPPLPPKSKRKRPNKQTSSVWDHFTKM 60

[Close]
BLAST of CmUC08G146540 vs. NCBI nr
Match: TYK03706.1 (zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 5.1e-11
Identity = 39/60 (65.00%), Postives = 45/60 (75.00%), Query Frame = 0 

Query: 90  ISSSSGNARGTDNNEMYP--PPPPPNISQTTKHIPPLPPKSNRKKPKKPTCSVWDHFTKI 148
           + SSS NA    NNEM    PPPPPN SQTT+H+PPLPPKS RK+P K T S+WDHFTK+
Sbjct: 1   MDSSSENASAIGNNEMPSPLPPPPPNTSQTTQHVPPLPPKSKRKRPNKQTSSIWDHFTKM 60

[Close]
BLAST of CmUC08G146540 vs. ExPASy TrEMBL
Match: A0A5A7UKW0 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00220 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.2e-13
Identity = 43/58 (74.14%), Postives = 47/58 (81.03%), Query Frame = 0 

Query: 90  ISSSSGNARGTDNNEMYPPPPPPNISQTTKHIPPLPPKSNRKKPKKPTCSVWDHFTKI 148
           + SSS NA  T NNEM  PPPPPNISQTTKH+PPLPPKS RK+P K T SVWDHFTK+
Sbjct: 40  MDSSSENASATGNNEM--PPPPPNISQTTKHLPPLPPKSKRKRPNKKTSSVWDHFTKM 95

[Close]
BLAST of CmUC08G146540 vs. ExPASy TrEMBL
Match: A0A5A7UR09 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G001560 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.2e-12
Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 0 

Query: 88  WVISSSSGNARGTDNNEMYP--PPPPPNISQTTKHIPPLPPKSNRKKPKKPTCSVWDHFT 147
           + + SSS NA  T NNEM    PPPPPN SQTT+H+PPLPPKS RK+P K T SVWDHFT
Sbjct: 15  FTMDSSSENASATGNNEMPSPLPPPPPNTSQTTQHVPPLPPKSKRKRPNKQTSSVWDHFT 74

[Close]
BLAST of CmUC08G146540 vs. ExPASy TrEMBL
Match: A0A5D3CWJ0 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold637G00740 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.8e-12
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 0 

Query: 90  ISSSSGNARGTDNNEMYP--PPPPPNISQTTKHIPPLPPKSNRKKPKKPTCSVWDHFTKI 148
           + SSS NA  T NNEM    PPPPPN SQTT+H+PPLPPKS RK+P K T SVWDHFTK+
Sbjct: 1   MDSSSENASATGNNEMPSPLPPPPPNTSQTTQHVPPLPPKSKRKRPNKQTSSVWDHFTKM 60

[Close]
BLAST of CmUC08G146540 vs. ExPASy TrEMBL
Match: A0A5D3DSA5 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00240 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.8e-12
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 0 

Query: 90  ISSSSGNARGTDNNEMYP--PPPPPNISQTTKHIPPLPPKSNRKKPKKPTCSVWDHFTKI 148
           + SSS NA  T NNEM    PPPPPN SQTT+H+PPLPPKS RK+P K T SVWDHFTK+
Sbjct: 1   MDSSSENASATGNNEMPSPLPPPPPNTSQTTQHVPPLPPKSKRKRPNKQTSSVWDHFTKM 60

[Close]
BLAST of CmUC08G146540 vs. ExPASy TrEMBL
Match: A0A5D3BZT5 (Zinc finger BED domain-containing protein RICESLEEPER 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00730 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.5e-11
Identity = 39/60 (65.00%), Postives = 45/60 (75.00%), Query Frame = 0 

Query: 90  ISSSSGNARGTDNNEMYP--PPPPPNISQTTKHIPPLPPKSNRKKPKKPTCSVWDHFTKI 148
           + SSS NA    NNEM    PPPPPN SQTT+H+PPLPPKS RK+P K T S+WDHFTK+
Sbjct: 1   MDSSSENASAIGNNEMPSPLPPPPPNTSQTTQHVPPLPPKSKRKRPNKQTSSIWDHFTKM 60

The following BLAST results are available for this feature:
BLAST of CmUC08G146540 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0056523.12.4e-1374.14zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ... [more]
KAA0056011.14.6e-1266.13zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ... [more]
TYK15892.17.9e-1268.33zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ... [more]
TYK26463.17.9e-1268.33zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ... [more]
TYK03706.15.1e-1165.00zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucumis melo var. ... [more]
BLAST of CmUC08G146540 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC08G146540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UKW01.2e-1374.14Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var... [more]
A0A5A7UR092.2e-1266.13Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var... [more]
A0A5D3CWJ03.8e-1268.33Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var... [more]
A0A5D3DSA53.8e-1268.33Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var... [more]
A0A5D3BZT52.5e-1165.00Zinc finger BED domain-containing protein RICESLEEPER 1-like OS=Cucumis melo var... [more]
BLAST of CmUC08G146540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 104..119
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..139

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC08G146540.1CmUC08G146540.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding