CmUC08G146310 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC08G146310
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Retrotransposon protein
Location	CmU531Chr08: 12598869 .. 12599330 (-)
RNA-Seq Expression	CmUC08G146310
Synteny	CmUC08G146310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCATTCAAGTCACGTGCAAGAGCTGCAAAACATATTTGGACGGATGAGGAGGACAGAATCCTCGTGGAGTGTTTGGTCCAGTGTGTGCAGTCTGGACACTCGCAAGCTGATAACGGAACTTTCCGACCTAGATTCCTATCAAACGTACTACAGATGATGCAGCAGAGGATACTAGGGTGTTCCATACAGGTAAGCCCACGTCTGGAGTCAAGGGTCAGGACCCTGAAGAGACAGTACAGCGCGATCGCTGAAATGTTGGGCCAGGCTGTAGTGGGTTTGGTTGGAATGCGGAGCGCAAATGTATTGACTATGAGGCAGAGATATTTGACGCGTGGGTCAAAGTTATTTCATTACTTTTTTTTATTTATTTCTTCTTCTTTTAAATTTTTCTTGGCCATAACATAACACATTTCACCTTTAACAAAGTCATCCGAGTGCAAAAGGACTGCGCCATAA

mRNA sequence

ATGGAAGCATTCAAGTCACGTGCAAGAGCTGCAAAACATATTTGGACGGATGAGGAGGACAGAATCCTCGTGGAGTGTTTGGTCCAGTGTGTGCAGTCTGGACACTCGCAAGCTGATAACGGAACTTTCCGACCTAGATTCCTATCAAACGTACTACAGATGATGCAGCAGAGGATACTAGGGTGTTCCATACAGGTAAGCCCACGTCTGGAGTCAAGGGTCAGGACCCTGAAGAGACAGTACAGCGCGATCGCTGAAATGTTGGGCCAGGCTGTAGTGGGTTTGGTTGGAATGCGGAGCGCAAATTCATCCGAGTGCAAAAGGACTGCGCCATAA

Coding sequence (CDS)

ATGGAAGCATTCAAGTCACGTGCAAGAGCTGCAAAACATATTTGGACGGATGAGGAGGACAGAATCCTCGTGGAGTGTTTGGTCCAGTGTGTGCAGTCTGGACACTCGCAAGCTGATAACGGAACTTTCCGACCTAGATTCCTATCAAACGTACTACAGATGATGCAGCAGAGGATACTAGGGTGTTCCATACAGGTAAGCCCACGTCTGGAGTCAAGGGTCAGGACCCTGAAGAGACAGTACAGCGCGATCGCTGAAATGTTGGGCCAGGCTGTAGTGGGTTTGGTTGGAATGCGGAGCGCAAATTCATCCGAGTGCAAAAGGACTGCGCCATAA

Protein sequence

MEAFKSRARAAKHIWTDEEDRILVECLVQCVQSGHSQADNGTFRPRFLSNVLQMMQQRILGCSIQVSPRLESRVRTLKRQYSAIAEMLGQAVVGLVGMRSANSSECKRTAP

Homology

[Close]

BLAST of CmUC08G146310 vs. NCBI nr
Match: OAY69002.1 (hypothetical protein ACMD2_25538 [Ananas comosus])

HSP 1 Score: 95.9 bits (237), Expect = 2.3e-16
Identity = 47/105 (44.76%), Postives = 65/105 (61.90%), Query Frame = 0


Query: 5   KSRARAAKHIWTDEEDRILVECLVQCVQSGHSQADNGTFRPRFLSNVLQMMQQRILGCSI 64
           K R R  KH WT EED  L+ECL+    SGH +ADNG FR  FL  + ++M +++ GC +
Sbjct: 10  KPRNRGIKHQWTKEEDDKLIECLLGLTNSGHWRADNGNFRCGFLQQLEKLMSEKLPGCGL 69

Query: 65  QVSPRLESRVRTLKRQYSAIAEMLGQAVVGLVGMRSANSSECKRT 110
           +  P + SR++  KRQY+AIAEMLG AV G        +  C+R+
Sbjct: 70  KARPHITSRIKLWKRQYNAIAEMLGAAVNGFGWDGKDKTITCERS 114

[Close]

BLAST of CmUC08G146310 vs. NCBI nr
Match: CAD1827961.1 (unnamed protein product [Ananas comosus var. bracteatus])

HSP 1 Score: 95.9 bits (237), Expect = 2.3e-16
Identity = 47/106 (44.34%), Postives = 68/106 (64.15%), Query Frame = 0


Query: 5   KSRARAAKHIWTDEEDRILVECLVQCVQSGHSQADNGTFRPRFLSNVLQMMQQRILGCSI 64
           KSR +  KH WT +ED  L+ECL++   SG+ +ADNGTFR  +L  + + M +R+ GC +
Sbjct: 78  KSRNKGLKHQWTKQEDEKLIECLLELTTSGNWKADNGTFRSGYLQQLEKWMHERLPGCQL 137

Query: 65  QVSPRLESRVRTLKRQYSAIAEMLGQAVVGLVGMRSANSSECKRTA 111
           +  P +ESR +  KRQY+AI+EMLG AV G     +     C++TA
Sbjct: 138 KGVPHIESRFKLWKRQYNAISEMLGPAVSGFGWNDAEKCIICEKTA 183

[Close]

BLAST of CmUC08G146310 vs. NCBI nr
Match: XP_031742657.1 (uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742658.1 uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742659.1 uncharacterized protein LOC116404426 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 3.0e-16
Identity = 42/89 (47.19%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 6  SRARAAKHIWTDEEDRILVECLVQCVQSGHSQADNGTFRPRFLSNVLQMMQQRILGCSIQ 65
          S +RA KH+WT EE+  LVEC+V+ V +G  ++DNGTFRP +L+ +L+MM  ++ GC++ 
Sbjct: 3  SSSRAPKHVWTKEEEATLVECMVKLVSAGRWKSDNGTFRPGYLAQLLRMMVVKLPGCNVH 62

Query: 66 VSPRLESRVRTLKRQYSAIAEMLGQAVVG 95
           +  ++ R++TLKR Y AIAEM G +  G
Sbjct: 63 ATTVIDYRIKTLKRSYQAIAEMRGPSCSG 91

[Close]

BLAST of CmUC08G146310 vs. NCBI nr
Match: XP_020080004.1 (uncharacterized protein LOC109703694 [Ananas comosus])

HSP 1 Score: 95.1 bits (235), Expect = 4.0e-16
Identity = 47/105 (44.76%), Postives = 64/105 (60.95%), Query Frame = 0


Query: 5   KSRARAAKHIWTDEEDRILVECLVQCVQSGHSQADNGTFRPRFLSNVLQMMQQRILGCSI 64
           K R R  KH WT EED  L+ECL+    SGH +ADNG FR  FL  + ++M +++ GC +
Sbjct: 10  KPRNRGIKHQWTKEEDDKLIECLLGLTNSGHWRADNGNFRCGFLQQLEKLMSEKLPGCGL 69

Query: 65  QVSPRLESRVRTLKRQYSAIAEMLGQAVVGLVGMRSANSSECKRT 110
              P + SR++  KRQY+AIAEMLG AV G        +  C+R+
Sbjct: 70  TARPHITSRIKLWKRQYNAIAEMLGAAVNGFGWDGKDKTITCERS 114

[Close]

BLAST of CmUC08G146310 vs. NCBI nr
Match: CAD1831704.1 (unnamed protein product [Ananas comosus var. bracteatus])

HSP 1 Score: 94.0 bits (232), Expect = 8.9e-16
Identity = 46/105 (43.81%), Postives = 66/105 (62.86%), Query Frame = 0


Query: 5   KSRARAAKHIWTDEEDRILVECLVQCVQSGHSQADNGTFRPRFLSNVLQMMQQRILGCSI 64
           KSR +  KH WT EED  L+ECL++   SG+ +ADNGTFR  +L  + + M +R+ GC +
Sbjct: 11  KSRNKGLKHQWTKEEDEKLIECLLELTTSGNWKADNGTFRNGYLQQLEKWMHERLPGCQL 70

Query: 65  QVSPRLESRVRTLKRQYSAIAEMLGQAVVGLVGMRSANSSECKRT 110
           +  P +ESR +  KRQY+AI+EMLG A  G     +     C++T
Sbjct: 71  KGVPHIESRFKLWKRQYNAISEMLGPAASGFGWNDAEKCIICEKT 115

[Close]

BLAST of CmUC08G146310 vs. ExPASy TrEMBL
Match: A0A199UW10 (Myb_DNA-bind_3 domain-containing protein OS=Ananas comosus OX=4615 GN=ACMD2_25538 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.1e-16
Identity = 47/105 (44.76%), Postives = 65/105 (61.90%), Query Frame = 0


Query: 5   KSRARAAKHIWTDEEDRILVECLVQCVQSGHSQADNGTFRPRFLSNVLQMMQQRILGCSI 64
           K R R  KH WT EED  L+ECL+    SGH +ADNG FR  FL  + ++M +++ GC +
Sbjct: 10  KPRNRGIKHQWTKEEDDKLIECLLGLTNSGHWRADNGNFRCGFLQQLEKLMSEKLPGCGL 69

Query: 65  QVSPRLESRVRTLKRQYSAIAEMLGQAVVGLVGMRSANSSECKRT 110
           +  P + SR++  KRQY+AIAEMLG AV G        +  C+R+
Sbjct: 70  KARPHITSRIKLWKRQYNAIAEMLGAAVNGFGWDGKDKTITCERS 114

[Close]

BLAST of CmUC08G146310 vs. ExPASy TrEMBL
Match: A0A6V7PAW0 (Myb_DNA-bind_3 domain-containing protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS11172 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.1e-16
Identity = 47/106 (44.34%), Postives = 68/106 (64.15%), Query Frame = 0


Query: 5   KSRARAAKHIWTDEEDRILVECLVQCVQSGHSQADNGTFRPRFLSNVLQMMQQRILGCSI 64
           KSR +  KH WT +ED  L+ECL++   SG+ +ADNGTFR  +L  + + M +R+ GC +
Sbjct: 78  KSRNKGLKHQWTKQEDEKLIECLLELTTSGNWKADNGTFRSGYLQQLEKWMHERLPGCQL 137

Query: 65  QVSPRLESRVRTLKRQYSAIAEMLGQAVVGLVGMRSANSSECKRTA 111
           +  P +ESR +  KRQY+AI+EMLG AV G     +     C++TA
Sbjct: 138 KGVPHIESRFKLWKRQYNAISEMLGPAVSGFGWNDAEKCIICEKTA 183

[Close]

BLAST of CmUC08G146310 vs. ExPASy TrEMBL
Match: A0A6P5E9X0 (uncharacterized protein LOC109703694 OS=Ananas comosus OX=4615 GN=LOC109703694 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.9e-16
Identity = 47/105 (44.76%), Postives = 64/105 (60.95%), Query Frame = 0


Query: 5   KSRARAAKHIWTDEEDRILVECLVQCVQSGHSQADNGTFRPRFLSNVLQMMQQRILGCSI 64
           K R R  KH WT EED  L+ECL+    SGH +ADNG FR  FL  + ++M +++ GC +
Sbjct: 10  KPRNRGIKHQWTKEEDDKLIECLLGLTNSGHWRADNGNFRCGFLQQLEKLMSEKLPGCGL 69

Query: 65  QVSPRLESRVRTLKRQYSAIAEMLGQAVVGLVGMRSANSSECKRT 110
              P + SR++  KRQY+AIAEMLG AV G        +  C+R+
Sbjct: 70  TARPHITSRIKLWKRQYNAIAEMLGAAVNGFGWDGKDKTITCERS 114

[Close]

BLAST of CmUC08G146310 vs. ExPASy TrEMBL
Match: A0A6V7PLJ8 (Myb_DNA-bind_3 domain-containing protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS14915 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.3e-16
Identity = 46/105 (43.81%), Postives = 66/105 (62.86%), Query Frame = 0


Query: 5   KSRARAAKHIWTDEEDRILVECLVQCVQSGHSQADNGTFRPRFLSNVLQMMQQRILGCSI 64
           KSR +  KH WT EED  L+ECL++   SG+ +ADNGTFR  +L  + + M +R+ GC +
Sbjct: 11  KSRNKGLKHQWTKEEDEKLIECLLELTTSGNWKADNGTFRNGYLQQLEKWMHERLPGCQL 70

Query: 65  QVSPRLESRVRTLKRQYSAIAEMLGQAVVGLVGMRSANSSECKRT 110
           +  P +ESR +  KRQY+AI+EMLG A  G     +     C++T
Sbjct: 71  KGVPHIESRFKLWKRQYNAISEMLGPAASGFGWNDAEKCIICEKT 115

[Close]

BLAST of CmUC08G146310 vs. ExPASy TrEMBL
Match: A0A5A7U7F7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001200 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 9.6e-16
Identity = 46/89 (51.69%), Postives = 66/89 (74.16%), Query Frame = 0


Query: 6  SRARAAKHIWTDEEDRILVECLVQCVQSGHSQADNGTFRPRFLSNVLQMMQQRILGCSIQ 65
          + ++A KH WT   D +LVECL+Q V+ G  +ADNGTF+  +L  V ++M+++ILG +IQ
Sbjct: 4  TNSKATKHRWT-TIDEVLVECLLQLVEEGGWRADNGTFKLGYLVQVQKLMKEKILGSNIQ 63

Query: 66 VSPRLESRVRTLKRQYSAIAEMLGQAVVG 95
          V+P L+SRV+ LK+QY AIAEM+G A  G
Sbjct: 64 VTPNLKSRVKILKKQYIAIAEMMGPACSG 91

The following BLAST results are available for this feature:

BLAST of CmUC08G146310 vs. NCBI nr


Match Name	E-value	Identity	Description
OAY69002.1	2.3e-16	44.76	hypothetical protein ACMD2_25538 [Ananas comosus]	[more]
CAD1827961.1	2.3e-16	44.34	unnamed protein product [Ananas comosus var. bracteatus]	[more]
XP_031742657.1	3.0e-16	47.19	uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742658.1 uncharact...	[more]
XP_020080004.1	4.0e-16	44.76	uncharacterized protein LOC109703694 [Ananas comosus]	[more]
CAD1831704.1	8.9e-16	43.81	unnamed protein product [Ananas comosus var. bracteatus]	[more]

BLAST of CmUC08G146310 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC08G146310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A199UW10	1.1e-16	44.76	Myb_DNA-bind_3 domain-containing protein OS=Ananas comosus OX=4615 GN=ACMD2_2553...	[more]
A0A6V7PAW0	1.1e-16	44.34	Myb_DNA-bind_3 domain-containing protein OS=Ananas comosus var. bracteatus OX=29...	[more]
A0A6P5E9X0	1.9e-16	44.76	uncharacterized protein LOC109703694 OS=Ananas comosus OX=4615 GN=LOC109703694 P...	[more]
A0A6V7PLJ8	4.3e-16	43.81	Myb_DNA-bind_3 domain-containing protein OS=Ananas comosus var. bracteatus OX=29...	[more]
A0A5A7U7F7	9.6e-16	51.69	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of CmUC08G146310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 15..90 e-value: 2.0E-8 score: 35.1
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 7..90
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 7..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC08G146310.1	CmUC08G146310.1	mRNA