CmUC08G144480 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC08G144480
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CmU531Chr08: 3893975 .. 3895466 (-)
RNA-Seq Expression	CmUC08G144480
Synteny	CmUC08G144480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTTTGAGCTATCTCTGCATCAACAAATAGGGCTTGCGATTGGACTTTCTCTTCAAATACTCGGAGGTATCGACTTCCACTTCATTGTTTGTTTGTTTTGTTTTTTTTTCATTCTTCTTACTCTCTATCTTTCCTACTGATTTCTTCTATAAATATCCACTGATATAACTAAATTCATTGTCATTCAAATCCATCTCTCATGGTAAACATGTACCATTGCTTATAACTTGTTTGATAAAATGCCTATGTGAACTGACTCATTCTATTTTTCATTTTATTTTATTTTATTTTTCTTTCCTCTCTTATGTTTCATTCACTTTAAAGTTTAAAGTTTGGCAAAATGCCATAAATTGGAGCACGGTATGTTGGAATGCCTTGAATCCTAAACCTAATTAGAATTGATATTTGATATATTTAATTATTTAAATATCTTCCTTCTCCACCTAGGGTTTAGAGAAGTGCACTATATAAACTCTCTAACCCTATAGGTTTCATTCATTCTGTACTCTTATAACATTTTCTCTAATAAAATTGTTCTCCCACTATCCCGTGGACGTAGCTAACACATTGTTAGTGAACCACGTAAATTTTTGTGTAGATGTTTTTTATTTTTTATGTTCTTTTGTATTCTTTAATTGTCAATTTCATAACAAACTGGTATTAGAGCCTAATTGTTAGGGTTTCAAAATTCCGCATATATTCAACAATTAAAGATGTCTAGCATGAATGTAAAAATTGATAAATTCACCAGGAGGAACAATTTTTGTTTATGGTAGATCAAGATGTGATCCCTGCTCAAGCAGCAGGGGCTGTGGGCACCACTGACTGTTAAGTCAAAGAAGGTAGCCATGGATGACGCCGGAGAATGGCAGACTCTGGAAGAGAAGCCTCACTCAACGATCATGCTATGTTTGGCTGATGACGTCGTCATCGAGGTTGCAGATGAAGAAACTGCCACTAGTCTGTGGTTAAAGTTGGAAAGTCTTTACATGATTAAGTCTTTAACCAAGAAGTTGTTTCTTAAGAAACGTTTGTATCATCTACATATGCAGGAAGGTACGTCTCTTCGAGATCATCTTGATCAGTTGAATAAAATTTTGTTAGATCTACGTAATATAGAAATTAAAGTTGATGATGAGGATGCTACCTTAATTCTATTGACGTCTTTGCCCTTGTCATATGAGACTTTCGTTTACTCGTATATTGGAGCTTGCCGGCCACACACGGCATCCATGCCAAAGGCTTTCGGCCACCTTCCTCTCAACTACCTGCCTACTTGTTTTCCATCTTCCAAAGGTGAAAGTAGGGCTTACACGGGCTACTATTGCTTTCTTCCAGGGGAGTTTGGGTACCAACCTATTGGTTACAAGGACTTGACTGCTGAAATCTCTAAGATTGTTCGGTTTCATTGGCCTAAGGAATGTGTCAAGACTTATGTCGTCCTATTACTAGGGATGAGATCCAACATGTTCTATTTTTTCTCTGCTTAA

mRNA sequence

TCTCTTTGAGCTATCTCTGCATCAACAAATAGGGCTTGCGATTGGACTTTCTCTTCAAATACTCGGAGGAGGAACAATTTTTGTTTATGGTAGATCAAGATGTGATCCCTGCTCAAGCAGCAGGGGCTGTGGGCACCACTGACTGTTAAGTCAAAGAAGGTAGCCATGGATGACGCCGGAGAATGGCAGACTCTGGAAGAGAAGCCTCACTCAACGATCATGCTATGTTTGGCTGATGACGTCGTCATCGAGGTTGCAGATGAAGAAACTGCCACTAGTCTGTGGTTAAAGTTGGAAAGTCTTTACATGATTAAGTCTTTAACCAAGAAGTTGTTTCTTAAGAAACGTTTGTATCATCTACATATGCAGGAAGGTACGTCTCTTCGAGATCATCTTGATCAGTTGAATAAAATTTTGTTAGATCTACGTAATATAGAAATTAAAGTTGATGATGAGGATGCTACCTTAATTCTATTGACGTCTTTGCCCTTGTCATATGAGACTTTCGTTTACTCGTATATTGGAGCTTGCCGGCCACACACGGCATCCATGCCAAAGGCTTTCGGCCACCTTCCTCTCAACTACCTGCCTACTTGTTTTCCATCTTCCAAAGGTGAAAGTAGGGCTTACACGGGCTACTATTGCTTTCTTCCAGGGGAGTTTGGGTACCAACCTATTGGTTACAAGGACTTGACTGCTGAAATCTCTAAGATTGTTCGGTTTCATTGGCCTAAGGAATGTGTCAAGACTTATGTCGTCCTATTACTAGGGATGAGATCCAACATGTTCTATTTTTTCTCTGCTTAA

Coding sequence (CDS)

ATGGATGACGCCGGAGAATGGCAGACTCTGGAAGAGAAGCCTCACTCAACGATCATGCTATGTTTGGCTGATGACGTCGTCATCGAGGTTGCAGATGAAGAAACTGCCACTAGTCTGTGGTTAAAGTTGGAAAGTCTTTACATGATTAAGTCTTTAACCAAGAAGTTGTTTCTTAAGAAACGTTTGTATCATCTACATATGCAGGAAGGTACGTCTCTTCGAGATCATCTTGATCAGTTGAATAAAATTTTGTTAGATCTACGTAATATAGAAATTAAAGTTGATGATGAGGATGCTACCTTAATTCTATTGACGTCTTTGCCCTTGTCATATGAGACTTTCGTTTACTCGTATATTGGAGCTTGCCGGCCACACACGGCATCCATGCCAAAGGCTTTCGGCCACCTTCCTCTCAACTACCTGCCTACTTGTTTTCCATCTTCCAAAGGTGAAAGTAGGGCTTACACGGGCTACTATTGCTTTCTTCCAGGGGAGTTTGGGTACCAACCTATTGGTTACAAGGACTTGACTGCTGAAATCTCTAAGATTGTTCGGTTTCATTGGCCTAAGGAATGTGTCAAGACTTATGTCGTCCTATTACTAGGGATGAGATCCAACATGTTCTATTTTTTCTCTGCTTAA

Protein sequence

MDDAGEWQTLEEKPHSTIMLCLADDVVIEVADEETATSLWLKLESLYMIKSLTKKLFLKKRLYHLHMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDATLILLTSLPLSYETFVYSYIGACRPHTASMPKAFGHLPLNYLPTCFPSSKGESRAYTGYYCFLPGEFGYQPIGYKDLTAEISKIVRFHWPKECVKTYVVLLLGMRSNMFYFFSA

Homology

[Close]

BLAST of CmUC08G144480 vs. NCBI nr
Match: KAG6437869.1 (hypothetical protein SASPL_102799 [Salvia splendens])

HSP 1 Score: 161.8 bits (408), Expect = 6.6e-36
Identity = 81/114 (71.05%), Postives = 96/114 (84.21%), Query Frame = 0


Query: 6   EWQTLEEKPHSTIMLCLADDVVIEVADEETATSLWLKLESLYMIKSLTKKLFLKKRLYHL 65
           EW TL+EK HSTIMLCL+DDV+IEV D+ETA +LW KLESLY  KSLT KL LK+RL+ L
Sbjct: 29  EWVTLDEKAHSTIMLCLSDDVIIEVVDQETAAALWTKLESLYRKKSLTNKLLLKQRLFRL 88

Query: 66  HMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDATLILLTSLPLSYETFVYSYI 120
            MQEGT LRDHL+ LNKILLDLRN+E+KV+D+DA +ILL SLP SYE FV S++
Sbjct: 89  SMQEGTPLRDHLENLNKILLDLRNVEVKVEDKDAAIILLVSLPESYENFVESFM 142

[Close]

BLAST of CmUC08G144480 vs. NCBI nr
Match: KAG6437470.1 (hypothetical protein SASPL_102387 [Salvia splendens])

HSP 1 Score: 161.4 bits (407), Expect = 8.7e-36
Identity = 81/119 (68.07%), Postives = 97/119 (81.51%), Query Frame = 0


Query: 1   MDDAGEWQTLEEKPHSTIMLCLADDVVIEVADEETATSLWLKLESLYMIKSLTKKLFLKK 60
           M+D  EW TL+EK HSTIMLCL+DDV+IEVA++ETA + W KLESLYM KSLT KL LK+
Sbjct: 1   MEDDEEWTTLDEKAHSTIMLCLSDDVIIEVAEQETAVAHWTKLESLYMTKSLTNKLLLKQ 60

Query: 61  RLYHLHMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDATLILLTSLPLSYETFVYSYI 120
           RL+ L MQEG  L+DHL+ LNKILLDLRN+++KV DED  LILL SLP SYE FV S++
Sbjct: 61  RLFRLRMQEGMPLQDHLENLNKILLDLRNVDVKVKDEDVALILLVSLPESYENFVESFM 119

[Close]

BLAST of CmUC08G144480 vs. NCBI nr
Match: KAG6394709.1 (hypothetical protein SASPL_145299 [Salvia splendens])

HSP 1 Score: 161.0 bits (406), Expect = 1.1e-35
Identity = 81/114 (71.05%), Postives = 94/114 (82.46%), Query Frame = 0


Query: 6   EWQTLEEKPHSTIMLCLADDVVIEVADEETATSLWLKLESLYMIKSLTKKLFLKKRLYHL 65
           EW TL+EK HSTIMLCL+DDV+IEV D E   +LW KLESLYM+KSLT KL LK+ L+ L
Sbjct: 29  EWVTLDEKAHSTIMLCLSDDVIIEVVDREIVAALWTKLESLYMMKSLTNKLLLKQPLFRL 88

Query: 66  HMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDATLILLTSLPLSYETFVYSYI 120
            MQEGT LRDHL+ LNKILLDLRN+E+KV+DEDA LILL SLP SYE FV S++
Sbjct: 89  RMQEGTPLRDHLENLNKILLDLRNVEVKVEDEDAALILLVSLPESYENFVESFM 142

[Close]

BLAST of CmUC08G144480 vs. NCBI nr
Match: ABO36622.1 (copia LTR rider [Solanum lycopersicum] >ABO36636.1 copia LTR rider [Solanum lycopersicum])

HSP 1 Score: 158.3 bits (399), Expect = 7.3e-35
Identity = 80/114 (70.18%), Postives = 95/114 (83.33%), Query Frame = 0


Query: 6   EWQTLEEKPHSTIMLCLADDVVIEVADEETATSLWLKLESLYMIKSLTKKLFLKKRLYHL 65
           E   LEEK HSTIMLCLADDV+ EV+DEETA  LWLKLESLYM KSLT KL LK+RL+ L
Sbjct: 48  EMAILEEKAHSTIMLCLADDVITEVSDEETAAGLWLKLESLYMTKSLTNKLLLKQRLFGL 107

Query: 66  HMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDATLILLTSLPLSYETFVYSYI 120
            M EGT LR+HL+QLN +LL+LRNI++K++DEDA LILL SLP+S+E FV S+I
Sbjct: 108 RMAEGTQLREHLEQLNTLLLELRNIDVKIEDEDAALILLVSLPMSFENFVQSFI 161

[Close]

BLAST of CmUC08G144480 vs. NCBI nr
Match: KAG6390907.1 (hypothetical protein SASPL_148652 [Salvia splendens])

HSP 1 Score: 157.9 bits (398), Expect = 9.6e-35
Identity = 80/114 (70.18%), Postives = 95/114 (83.33%), Query Frame = 0


Query: 6   EWQTLEEKPHSTIMLCLADDVVIEVADEETATSLWLKLESLYMIKSLTKKLFLKKRLYHL 65
           +W TL EK HSTIMLCL+DDV+IEVA++ETA +LW KLESLYM KSLT KL LK+RL+ L
Sbjct: 29  KWVTLAEKAHSTIMLCLSDDVIIEVANQETAVALWTKLESLYMTKSLTNKLLLKQRLFRL 88

Query: 66  HMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDATLILLTSLPLSYETFVYSYI 120
           H QEG  LRDHL+ LNKILLDLRN+E+KV+DEDA LILL SL  SY+ FV S++
Sbjct: 89  HKQEGKPLRDHLENLNKILLDLRNVEVKVEDEDAALILLVSLLKSYKNFVESFM 142

[Close]

BLAST of CmUC08G144480 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-23
Identity = 54/109 (49.54%), Postives = 77/109 (70.64%), Query Frame = 0


Query: 4   AGEWQTLEEKPHSTIMLCLADDVVIEVADEETATSLWLKLESLYMIKSLTKKLFLKKRLY 63
           A +W  L+E+  S I L L+DDVV  + DE+TA  +W +LESLYM K+LT KL+LKK+LY
Sbjct: 49  AEDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLY 108

Query: 64  HLHMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDATLILLTSLPLSYE 113
            LHM EGT+   HL+  N ++  L N+ +K+++ED  ++LL SLP SY+
Sbjct: 109 ALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYD 157

[Close]

BLAST of CmUC08G144480 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 46.6 bits (109), Expect = 4.1e-04
Identity = 33/115 (28.70%), Postives = 58/115 (50.43%), Query Frame = 0


Query: 1   MDDAGEWQTLEEKPHSTIMLCLADDVVIEVADEETATSLWLKLESLYMIKSLTKKLFLKK 60
           +DD+  W+  E    STI+  L+D  +     + TA  +   L+++Y  KSL  +L L+K
Sbjct: 44  VDDS--WKKAERCAKSTIIEYLSDSFLNFATSDITARQILENLDAVYERKSLASQLALRK 103

Query: 61  RLYHLHMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDATLILLTSLPLSYETFV 116
           RL  L +    SL  H    ++++ +L     K+++ D    LL +LP  Y+  +
Sbjct: 104 RLLSLKLSSEMSLLSHFHIFDELISELLAAGAKIEEMDKISHLLITLPSCYDGII 156

[Close]

BLAST of CmUC08G144480 vs. ExPASy TrEMBL
Match: B1N668 (Copia LTR rider OS=Solanum lycopersicum OX=4081 GN=LYC_68t000004 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 3.6e-35
Identity = 80/114 (70.18%), Postives = 95/114 (83.33%), Query Frame = 0


Query: 6   EWQTLEEKPHSTIMLCLADDVVIEVADEETATSLWLKLESLYMIKSLTKKLFLKKRLYHL 65
           E   LEEK HSTIMLCLADDV+ EV+DEETA  LWLKLESLYM KSLT KL LK+RL+ L
Sbjct: 48  EMAILEEKAHSTIMLCLADDVITEVSDEETAAGLWLKLESLYMTKSLTNKLLLKQRLFGL 107

Query: 66  HMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDATLILLTSLPLSYETFVYSYI 120
            M EGT LR+HL+QLN +LL+LRNI++K++DEDA LILL SLP+S+E FV S+I
Sbjct: 108 RMAEGTQLREHLEQLNTLLLELRNIDVKIEDEDAALILLVSLPMSFENFVQSFI 161

[Close]

BLAST of CmUC08G144480 vs. ExPASy TrEMBL
Match: A0A6D2K463 (CCHC-type domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS19845 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.4e-34
Identity = 80/117 (68.38%), Postives = 95/117 (81.20%), Query Frame = 0


Query: 3   DAGEWQTLEEKPHSTIMLCLADDVVIEVADEETATSLWLKLESLYMIKSLTKKLFLKKRL 62
           DA    +LEEK H+TI+LCLADDV+IEV+ E TA  LW KLESLYM KSLT KL LK+RL
Sbjct: 43  DAAAMTSLEEKAHATILLCLADDVIIEVSSETTAAGLWGKLESLYMTKSLTNKLLLKQRL 102

Query: 63  YHLHMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDATLILLTSLPLSYETFVYSYI 120
           + L M EGT LRDHLDQLN +LL+LRNI++KV+DEDA L+LL SLPLSYE +V S+I
Sbjct: 103 FALRMDEGTQLRDHLDQLNTLLLELRNIDVKVEDEDAALLLLVSLPLSYEHYVQSFI 159

[Close]

BLAST of CmUC08G144480 vs. ExPASy TrEMBL
Match: A0A0D3BRH8 (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.3e-34
Identity = 79/116 (68.10%), Postives = 95/116 (81.90%), Query Frame = 0


Query: 6   EWQTLEEKPHSTIMLCLADDVVIEVADEETATSLWLKLESLYMIKSLTKKLFLKKRLYHL 65
           E +  EEK +STI+LCLAD+++IEV+  + A  LWLKLESLYM KSLTKKL LK+RL+ L
Sbjct: 48  EMEVTEEKAYSTILLCLADEIIIEVSGVDAAADLWLKLESLYMTKSLTKKLLLKQRLFAL 107

Query: 66  HMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDATLILLTSLPLSYETFVYSYIGA 122
            MQEGT L+DHLD LN ILLDLRNI++KV+DEDA LILL SLP SYE FV S+IG+
Sbjct: 108 RMQEGTQLQDHLDSLNSILLDLRNIDVKVEDEDAALILLVSLPNSYENFVQSFIGS 163

[Close]

BLAST of CmUC08G144480 vs. ExPASy TrEMBL
Match: A0A6P6S469 (disease resistance protein RGA2-like OS=Coffea arabica OX=13443 GN=LOC113687246 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.0e-34
Identity = 81/115 (70.43%), Postives = 94/115 (81.74%), Query Frame = 0


Query: 6   EWQTLEEKPHSTIMLCLADDVVIEVADEETATSLWLKLESLYMIKSLTKKLFLKKRLYHL 65
           E  +LEEK HSTIML L DDV+ EVA EETAT LW+KLESLYM KSLT KL LK+RL+ L
Sbjct: 479 ESMSLEEKAHSTIMLFLTDDVITEVAGEETATGLWVKLESLYMTKSLTNKLLLKQRLFGL 538

Query: 66  HMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDATLILLTSLPLSYETFVYSYIG 121
            MQEGT L++HLDQLN ILL+LRNI++K++DED  LILL SL LSYE FV S+IG
Sbjct: 539 RMQEGTPLQEHLDQLNTILLELRNIDVKIEDEDTALILLVSLSLSYENFVQSFIG 593

[Close]

BLAST of CmUC08G144480 vs. ExPASy TrEMBL
Match: A0A0D2ZRY6 (CCHC-type domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 7.4e-33
Identity = 77/117 (65.81%), Postives = 95/117 (81.20%), Query Frame = 0


Query: 3   DAGEWQTLEEKPHSTIMLCLADDVVIEVADEETATSLWLKLESLYMIKSLTKKLFLKKRL 62
           +A + +TLEEK  STI+LCL D+++IEV+DE+TA SLW KLESLYM KSLT KL LK+RL
Sbjct: 20  EAADLETLEEKAFSTILLCLVDEIIIEVSDEKTAASLWQKLESLYMTKSLTNKLLLKQRL 79

Query: 63  YHLHMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDATLILLTSLPLSYETFVYSYI 120
           + L MQE   LRDHLD+LN ILL+LRNI++KV+DED  LILL SLP S+E FV S+I
Sbjct: 80  FALRMQEDIELRDHLDKLNLILLELRNIDVKVEDEDVALILLVSLPNSFENFVQSFI 136

The following BLAST results are available for this feature:

BLAST of CmUC08G144480 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6437869.1	6.6e-36	71.05	hypothetical protein SASPL_102799 [Salvia splendens]	[more]
KAG6437470.1	8.7e-36	68.07	hypothetical protein SASPL_102387 [Salvia splendens]	[more]
KAG6394709.1	1.1e-35	71.05	hypothetical protein SASPL_145299 [Salvia splendens]	[more]
ABO36622.1	7.3e-35	70.18	copia LTR rider [Solanum lycopersicum] >ABO36636.1 copia LTR rider [Solanum lyco...	[more]
KAG6390907.1	9.6e-35	70.18	hypothetical protein SASPL_148652 [Salvia splendens]	[more]

BLAST of CmUC08G144480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.4e-23	49.54	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	4.1e-04	28.70	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of CmUC08G144480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
B1N668	3.6e-35	70.18	Copia LTR rider OS=Solanum lycopersicum OX=4081 GN=LYC_68t000004 PE=4 SV=1	[more]
A0A6D2K463	1.4e-34	68.38	CCHC-type domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR...	[more]
A0A0D3BRH8	2.3e-34	68.10	Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1	[more]
A0A6P6S469	3.0e-34	70.43	disease resistance protein RGA2-like OS=Coffea arabica OX=13443 GN=LOC113687246 ...	[more]
A0A0D2ZRY6	7.4e-33	65.81	CCHC-type domain-containing protein OS=Brassica oleracea var. oleracea OX=109376...	[more]

BLAST of CmUC08G144480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 7..116 e-value: 1.4E-29 score: 102.6
None	No IPR available	PANTHER	PTHR34676:SF12	ZINC FINGER, CCHC-TYPE, RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN PROTEIN-RELATED	coord: 4..117
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 4..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC08G144480.1	CmUC08G144480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006952	defense response
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding